BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483788
Length=446
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46360.1 | Symbols: | unknown protein; Has 5 Blast hits to ... 483 8e-136
> AT2G46360.1 | Symbols: | unknown protein; Has 5 Blast hits to
5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:19028488-19029015 FORWARD LENGTH=528
Length=528
Score = 483 bits (261), Expect = 8e-136
Identities = 305/326 (94%), Gaps = 4/326 (1%)
Strand=Plus/Plus
Query 2 TTTTCGGTTTATGGATTCGTCTCGCGGAGCTAACCGCAAACACGATGAGGAAGAGAGAAG 61
|||| ||||||||||||||||||||| ||| || || ||||| |||| ||| |||| |||
Sbjct 10 TTTTGGGTTTATGGATTCGTCTCGCGAAGCCAATCGTAAACATGATGCGGAGGAGAAAAG 69
Query 62 AGAAGACGAGAAAACTTCTCTGATGGATGTAAATCTCATGGTGGTACTTCTCTCTCAGCT 121
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 70 AGAAGACGAGAAAACTTCTCTGATGGAGGTAAATCTCATGGTGGTGCTTCTCTCTCAGCT 129
Query 122 TTGTACGAAGAAGGAAGATGAGAA-GAGTTTAGAGAAAGTGAGAAGAGATCATGTTGCAC 180
|| ||||||||||||||||||||| | |||| ||||||| ||||||||| ||||||||||
Sbjct 130 TTCTACGAAGAAGGAAGATGAGAATG-GTTTGGAGAAAGAGAGAAGAGACCATGTTGCAC 188
Query 181 ACGAGGCTCGTGAATCTAGAGCACGTGCAAACAAGAGGTTTATGAAGGAGACAACA-TTG 239
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||
Sbjct 189 ACGAGGCTCGTGAATCTAGAGCACGTGCAAACAAGAGGTTTATGAAGGATACAA-AGTTG 247
Query 240 ATGGAGAAAAGGACTCACGTGCTTCAGCCCATGGCTAAAGAATTCAGGCATTACAGGAAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 ATGGAGAAAAGGACTCACGTGCTTCAGCCCATGGCTAAAGAATTCAGGCATTACAGGAAA 307
Query 300 ATGTGAAGGCGCATGACTGACCTGTG 325
||||||||||||||||||||| ||||
Sbjct 308 ATGTGAAGGCGCATGACTGACTTGTG 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21212990078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5