BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483789
Length=2083
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46370.4 | Symbols: JAR1 | Auxin-responsive GH3 family prote... 2929 0.0
> AT2G46370.4 | Symbols: JAR1 | Auxin-responsive GH3 family protein
| chr2:19033741-19036445 FORWARD LENGTH=2329
Length=2329
Score = 2929 bits (1586), Expect = 0.0
Identities = 1739/1813 (96%), Gaps = 10/1813 (1%)
Strand=Plus/Plus
Query 84 TTTAGGATGTTGGAGAAGGTTGAAACTTTCGACATGACCAGAGTAATTGATGAATTCGAT 143
|||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 520 TTTAAGATGTTGGAGAAGGTTGAAACTTTCGACATGAACAGAGTCATTGATGAATTCGAT 579
Query 144 GATATGACTAGAAACGCTGATCAAGTCCAAAAACAAACCTTGAAAGATATTCTTCTCAAG 203
|| ||||||||||||||| |||||||||| |||||||| |||||||| ||||||||||||
Sbjct 580 GAAATGACTAGAAACGCTCATCAAGTCCAGAAACAAACTTTGAAAGAGATTCTTCTCAAG 639
Query 204 AACAAATCCGCCATTTACTTACAAAACTGTGGACTCAGTGGAAACGCAACTGACTCAGAA 263
||| |||||||||||||||||||||||||||| |||| ||||||||| |||||| | |||
Sbjct 640 AACCAATCCGCCATTTACTTACAAAACTGTGGTCTCAATGGAAACGCTACTGACCCTGAA 699
Query 264 GAAGCTTTCAAAGCTATGGTTCCATTAGTCACTGATGTTGAATTAGAGCCTTACATCAAA 323
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 700 GAAGCTTTCAAATCTATGGTTCCTTTAGTCACTGATGTTGAATTAGAGCCTTACATCAAA 759
Query 324 AGAATGGTCGATGGTGACACTTCACCTATTCTCACTGGTCACCCTGTTCCTGCCATTTCC 383
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 AGAATGGTTGATGGTGACACTTCACCTATTCTCACTGGTCACCCTGTTCCTGCCATTTCC 819
Query 384 TTAAGCTCTGGAACTAGTCAAGGCCGTCCAAAGTTTATTCCTTTCACTGATGAATTAATG 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 TTAAGCTCTGGAACTAGTCAAGGCCGTCCAAAGTTTATTCCTTTCACTGATGAATTAATG 879
Query 444 GAGAACACATTACAACTGTTTCGCACTGCTTTTGCCTTCAGAAACAGAGATTTTCCTATT 503
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 880 GAGAACACATTGCAACTGTTTCGCACTGCTTTTGCCTTCAGAAACAGAGATTTTCCCATT 939
Query 504 GATGACAATGGGAGAGCTTTGCAGTTTATCTTCGGCAGCAAGCAGTACATATCAACGGGA 563
||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 940 GATGACAATGGCAAAGCTTTGCAATTTATCTTCAGCAGCAAGCAGTACATATCAACGGGA 999
Query 564 GGTGTCCCGGTTGGAACCGCAACCACAAACGTGTACCGCAACCCTAACTTCAAAGCCGGG 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1000 GGTGTCCCGGTTGGAACCGCAACCACAAACGTGTACCGCAACCCTAACTTCAAAGCTGGG 1059
Query 624 ATGAAATCTATAACGTCTCCTTCCTGTAGTCCTGATGAAGTTGTCTTTAGTCCTGATGTC 683
|||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||
Sbjct 1060 ATGAAATCTATAACGTCTCCTTCCTGTAGTCCCGACGAAGTTATCTTTAGTCCTGATGTC 1119
Query 684 CATCAAGCCTTGTATTGCCATCTCTTATCCGGAATTCTCTTCAGAGATCAAGTTCAATAC 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 CATCAAGCCTTGTATTGCCATCTCTTATCCGGAATTCTCTTCAGAGATCAAGTTCAATAC 1179
Query 744 GTCTTTGCCGTCTTTGCTCACGGTCTAGTTCACGCGTTTAGAACCTTTGAACAGGTTTGG 803
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1180 GTCTTTGCCGTCTTTGCTCACGGTCTAGTTCACGCTTTTAGAACCTTTGAACAGGTTTGG 1239
Query 804 GAAGAGATTGTTACCGATATTAAAGATGGTGTCTTAAGCAACCGTATTACTGTTCCATCA 863
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1240 GAAGAGATTGTTACCGATATCAAAGATGGTGTCTTAAGCAACCGTATTACTGTCCCATCG 1299
Query 864 GTCCGTACTGCGATGTCGAAGCTGCTCACACCTAACCCTGAGCTAGCTGAGACAATCCGC 923
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1300 GTCCGTACTGCAATGTCGAAGCTGCTCACACCTAACCCTGAGCTAGCTGAGACGATCCGC 1359
Query 924 TCCAAATGTATGAGTTTGAGCAACTGGTTCGGATTGATTCCCGCGCTCTTCCCGAATGCA 983
||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 1360 ACCAAATGTATGAGTTTGAGCAACTGGTACGGATTGATTCCCGCGCTCTTCCCCAACGCA 1419
Query 984 AAATATGTTTACGGGATCATGACTGGCTCGATGGAGCCGTATGTGCCAAAGCTGAGACAT 1043
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1420 AAGTATGTTTACGGGATCATGACTGGCTCCATGGAGCCGTATGTGCCAAAGCTGAGACAT 1479
Query 1044 TATGCGGGCGATCTACCTCTTGTGAGTCATGACTACGGTAGCTCGGAAGGATGGATTGCT 1103
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1480 TACGCGGGTGATCTACCTCTTGTGAGCCATGACTACGGTAGCTCGGAAGGATGGATTGCT 1539
Query 1104 GCTAATGTTACCCCGAA-ACTGTCTCCAGAGGAAGCTACATTTGCGGTGATTCCAAATCT 1162
|||||||||||||| || | ||||||||||||||||||||||| |||||||| |||||
Sbjct 1540 GCTAATGTTACCCC-AAGGTTATCTCCAGAGGAAGCTACATTTGCTGTGATTCCGAATCT 1598
Query 1163 CGGTTATTTCGAGTTTCTCCCTGTATCTGAAACAGGGGAAGGAGAGGAGAAACCGGTTGG 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 CGGTTATTTCGAGTTTCTCCCTGTATCTGAAACAGGGGAAGGAGAGGAGAAACCGGTTGG 1658
Query 1223 TTTAACTGAAGTCAAGATCGGAGAAGAGTATGAGGTTGTCATCACAAATTACGCAGGGTT 1282
||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1659 TTTAACTCAAGTCAAGATTGGAGAAGAGTATGAAGTTGTCATCACAAATTACGCAGGGTT 1718
Query 1283 GTATCGGTACCGGCTTGGAGATGTGGTAAAGATCATTGGTTTCTACAACAACACTCCCCA 1342
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1719 GTATCGATACCGGCTTGGAGATGTGGTAAAGGTCATTGGTTTCTACAACAACACTCCCCA 1778
Query 1343 ACTAAAATTCATATGCAGGAGAAACCTAATCCTCTCGATCAACATCGACAAGAACACCGA 1402
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1779 ACTAAAATTCATATGCAGGAGAAACCTGATTCTCTCGATCAACATCGACAAGAACACCGA 1838
Query 1403 AAGAGACCTCCAGCTTTCAGTAGAATCGGCTGCAAAGAGACTCTCAGAAGAAAAGATCGA 1462
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 AAGAGACCTTCAGCTTTCAGTAGAATCGGCTGCAAAGAGACTCTCAGAAGAAAAGATCGA 1898
Query 1463 AGTCATAGACTTCTCTAGCCACATCGATGTCTCGACAGATCCAGGACATTACGCTATATT 1522
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1899 GGTCATAGACTTCTCTAGCTACATCGATGTCTCGACAGATCCAGGACATTACGCTATCTT 1958
Query 1523 CTGGGAGATTTCAGGAGAAACAAACGAAGACGTTCTTCAAGATTGCTGCAACTGTTTAGA 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1959 CTGGGAGATTTCAGGAGAAACAAACGAAGACGTTCTTCAAGATTGCTGCAACTGTTTAGA 2018
Query 1583 CCGAGCATTCATCGATGCGGGTTACGTAAGTTCCCGGAAATGCAAGACTATTGGAGCCTT 1642
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2019 CCGAGCATTCATCGATGCGGGTTACGTTAGTTCCCGGAAATGCAAGACTATTGGAGCCTT 2078
Query 1643 AGAGCTGAGAGTTGTCGCAAAAGGAACTTTCAGGAAGATTCAAGAACATTTTCTCGGGCT 1702
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2079 GGAGCTGAGAGTTGTCGCAAAAGGAACTTTCCGGAAGATTCAAGAACATTTTCTCGGGCT 2138
Query 1703 TGGTTCATCGGCTGGACAGTTTAAGATGCCAAGATGTGTGAAGCCAAGTAATGCTAAGGT 1762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 TGGTTCATCGGCTGGACAGTTTAAGATGCCAAGATGTGTGAAGCCAAGTAATGCTAAGGT 2198
Query 1763 TCTCCAAATTCTGTGTGAGAATGTGGTGAGTAGCTACTTCAGCACAGCGTTTTGACTAAA 1822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2199 TCTCCAAATTCTGTGTGAGAATGTGGTGAGTAGCTACTTCAGCACAGCGTTTTGACTCA- 2257
Query 1823 CTATAAATTGTG--AAATCAA-GAAAGTGGTTTTCAGTTGCTTATTT--GTCGTTGTTGT 1877
||| |||||||| ||||||| |||||||||||| ||||| |||||| |||||||||||
Sbjct 2258 CTA-AAATTGTGTGAAATCAAAGAAAGTGGTTTTTAGTTGTTTATTTCCGTCGTTGTTGT 2316
Query 1878 CTTTATT-GTCAA 1889
||||||| |||||
Sbjct 2317 CTTTATTTGTCAA 2329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103262521065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5