BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483794
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46400.1 | Symbols: WRKY46, ATWRKY46 | WRKY DNA-binding prot... 1415 0.0
> AT2G46400.1 | Symbols: WRKY46, ATWRKY46 | WRKY DNA-binding protein
46 | chr2:19043414-19044826 REVERSE LENGTH=1222
Length=1222
Score = 1415 bits (766), Expect = 0.0
Identities = 936/1012 (92%), Gaps = 35/1012 (3%)
Strand=Plus/Plus
Query 1 AGAAAAGATTCTTAA-TTTCTGCAAGTGAATGCAGAGAGATGATGATGGAAGAGAAACTC 59
||||||||||||||| |||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 37 AGAAAAGATTCTTAATTTTCTG-AAGTGAATGCA-A-AGATGATGATGGAAGAGAAACTT 93
Query 60 GTGATCAACGAATTGGAGCTAGGGAAAGAGCTTGCGAATCGATTGATGAGCAATCTCAAA 119
||||||||||||||||| ||||||||||||||||| || |||||||||| ||||||||||
Sbjct 94 GTGATCAACGAATTGGAACTAGGGAAAGAGCTTGCTAACCGATTGATGAACAATCTCAAA 153
Query 120 CACACTTCTTCTGCT-GATTCCAACAAAACCTTGATCTCTGAAATCCTCCGTATTTACCA 178
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 154 CACACTTCTTCTG-TCGATTCCAACAAAACCTTGATCTCTGATATCCTCCGTATTTACCA 212
Query 179 GAATGCCATTTTCATGTTGAGGTTCAGCGAAGACAAGAACATCCTTAAGCGAAGCCTTGA 238
||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 213 GAATGCCATTTTCATGTTGAGCTTCAACCAAGACAAGAACATCCTTAAGCGAAGCCTTGA 272
Query 239 GATCGATGGAAAGGATTCTAAGAACGTCTTCAAAAAGAGGAAAGTTTCGGAGAAGAAGAC 298
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 273 GATCGATGGAAAAGATTCTAAAAACGTCTTCAAAAAGAGGAAAGTATCGGAGAAGAACAC 332
Query 299 AGAGAAAGTTAAGGTTTTTGTTGCAACAGGGCAAGAAAATGGTTCAATTGATGATGGTCA 358
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 333 AGAGAAAGTTAAGGTTTTTGTTGCAACAGAACAAGAAAATGGCTCTATTGATGATGGTCA 392
Query 359 TTGCTGGAGAAAATATGGGCAAAAAGAGATTCATGGATCCAAAAATCCTAGAGCATATTA 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 CTGCTGGAGAAAATATGGGCAAAAAGAGATTCATGGATCCAAAAATCCTAGAGCATATTA 452
Query 419 CAGATGCACGCATCGATTCACGCAAGACTGTTTAGCAGTGAAGCAAGTTCAGAAATCAGA 478
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 453 CAGATGCACGCATCGATTCACACAAGACTGTTTAGCAGTGAAGCAAGTTCAGAAATCAGA 512
Query 479 CACAGATCCTTTGGTTTACGAAGTGAAGTATCTCGGAAACCACACTTGTGACAACATCAC 538
||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 513 CACAGATCCTTCCCTTTTCGAAGTGAAGTATCTCGGAAACCACACTTGTAACAACATCAC 572
Query 539 ATCCCCGAAGACGACGATGACCACGAACTTCTCTGTTTCGT---CGTTC--GAA------ 587
||||||||||||||||| | ||||||||||||||| | || | |||
Sbjct 573 ATCCCCGAAGACGACGA---C---GAACTTCTCTGTTTCATTGACGAACACGAACATCTT 626
Query 588 -GAAGGAAACAGAGTACATGTTACAGAGCAAACAGAAGACACCAAACCGACGAAGTCCGA 646
|||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||
Sbjct 627 TGAAGGAAACAGAGTACATGTTACAGAGCAATCGGAAGACATGAAACCGACCAAGTCCGA 686
Query 647 AGAAGTGATGATAAATCTTGAAGATCTGGAGAACAAGAAGAACATTTTCAGAACGTTTTC 706
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 AGAAGTGATGATAAGCCTTGAAGATCTGGAGAACAAGAAGAACATTTTCAGAACGTTTTC 746
Query 707 TTTCTCTAACCATGAGATTGACAACGGTGTGTGGAAAAGCAACATTTTCT-GGGAAAATT 765
||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||||| ||
Sbjct 747 TTTCTCTAACCATGAGATTGAGAACGGTGTGTGGAAAAGTAACCTTTTCTTGGGAAA-TT 805
Query 766 TCGTGGAAGATCTTTCTCCTGCAACATCAGGTTCTGCAATTACCAGCGAGGTTTTATCTG 825
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 806 TCGTGGAAGATCTTTCTCCTGCAACATCAGGGTCTGCAATTACCAGCGAGGTTTTATCTG 865
Query 826 CACCTGCTTCTGTTGAGAATTCCGAAACTGCAGATTCGTATTTCTCGTCTTTGGACAATA 885
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 CACCTGCTGCTGTTGAGAATTCCGAAACTGCAGATTCGTATTTCTCGTCTTTGGACAATA 925
Query 886 TTATCGATTTCGGACAGGATTGGTTGTGGTCGTAGCTTTGAAT--T-GATTTGGTTAATG 942
||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 926 TTATCGATTTCGGACAGGATTGGTTGTGGTCGTAGCTTTGAATAATTGATTTGGTGAATG 985
Query 943 TAATGTCTCTCT-T-AATGGCAGTAATTAATTATAGATGGTCACTTTAATTT 992
|||||||||||| | |||||||||||||| | | |||||||| ||||||||
Sbjct 986 TAATGTCTCTCTCTTAATGGCAGTAATTA-T-A--GATGGTCAGTTTAATTT 1033
Score = 121 bits (65), Expect = 2e-26
Identities = 77/82 (94%), Gaps = 4/82 (5%)
Strand=Plus/Plus
Query 990 TTTCAGCAGGGTTT-T---TTATGATTTCCCTTTGAAGTTGGATTGTACTTTATGACAAT 1045
|||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1141 TTTCAGCAGGGTTTATGAATTATGATTTCCCTATGAAGTTGGATTGTACTTTATGACAAT 1200
Query 1046 TAATAAAGAAAGGATTTTATAT 1067
||||||||||||||||||||||
Sbjct 1201 TAATAAAGAAAGGATTTTATAT 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52258767345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5