BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483796
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46420.1 | Symbols: | Plant protein 1589 of unknown functio... 1842 0.0
AT3G61700.2 | Symbols: | Plant protein 1589 of unknown functio... 861 0.0
> AT2G46420.1 | Symbols: | Plant protein 1589 of unknown function
| chr2:19053686-19057096 FORWARD LENGTH=1868
Length=1868
Score = 1842 bits (997), Expect = 0.0
Identities = 1297/1434 (90%), Gaps = 52/1434 (4%)
Strand=Plus/Plus
Query 192 GTGTTGTTTTTACTAATTCTGAATCTTTAGAGGGCCCAAAAATTCGTCGAG-AAATCTGT 250
||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| | ||
Sbjct 268 GTGTTGTTTTTACTAGCTCTGAATCTTTAGAGGGCTCAAAAATTCGTCGAGAAAACCAGT 327
Query 251 C-TTGGAAGTGTAGCATTTTGGATTAAATCT-TGAATTTAA-GGTGAA-ACCACCGTTTT 306
| ||||||||||||||||||||||| | | ||| || || |||| | | | |||
Sbjct 328 CTTTGGAAGTGTAGCATTTTGGATTCGCT-TGTGACTTGAATCTTGAATATTA--GGTTT 384
Query 307 GTATTTGGTCAACAACATCAGAAACATGCGTGCTCAGA-----AG----TT-G-----AT 351
||||||||||||||||||||||||||| ||||||||| || || | ||
Sbjct 385 CTATTTGGTCAACAACATCAGAAACATGTGTGCTCAGATGTTGAGCTCTTTAGATTCAAT 444
Query 352 TGTTGTGAACGTTGTTAAGGTGCATAGTTG-TCATTGAAGGATGCACGATTTTTATATTT 410
|||||||||| |||| |||| | |||| || | ||||||||||||| ||||||||||||
Sbjct 445 TGTTGTGAACATTGTCAAGGAGAATAG-TGATTATTGAAGGATGCAAGATTTTTATATTC 503
Query 411 AGCTCCAATGAAGAAC-GA-A-CAG-T-C-TTCTTCTACCCAAGTTTCACTTGAGTCCCA 464
||||| |||||||||| || | || | | ||||||||||||||||||| |||||||||
Sbjct 504 AGCTCTAATGAAGAACGGACAGGAGTTGCAGTCTTCTACCCAAGTTTCACATGAGTCCCA 563
Query 465 AGGTGAACAAAAAGTTAATCAATCAATAGAAGCCCCTATACAAGATTCTGGTTCTGTATC 524
||||||||| ||||||||| |||| ||||||| || |||||||||||||||||||||||
Sbjct 564 AGGTGAACAGAAAGTTAATTTATCAGTAGAAGCTCCAATACAAGATTCTGGTTCTGTATC 623
Query 525 TGCCTCAAGTAATGACGGTAGGAAAGTTTCAAGGCAAGATATTGAACTTGTCCAAAATTT 584
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 624 TGCCTCAAGTAATGACGGTAGGAAAGTGTCAAGACAAGATATTGAACTTGTCCAAAATTT 683
Query 585 GATAGAAAGATGTCTTCAGTTGTACATGAACAGAGATGAGGTCGTCAAA-ACCCTCTTGA 643
||||||||||||||| ||||||||||||| ||||||||||||||| ||| || |||||||
Sbjct 684 GATAGAAAGATGTCTCCAGTTGTACATGAGCAGAGATGAGGTCGT-AAAGACACTCTTGA 742
Query 644 CCCGTGCAAGGATTGACCCTGGTTTTACAACCTTAGTATGGCAGAAACTGGAAGAAGAAA 703
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 743 CCCGTGCAAGGATTGACCCTGGTTTTACAACATTAGTATGGCAAAAACTGGAAGAAGAAA 802
Query 704 ACGAAGAGTTTTTCAGGGCATATTACATCAGGCTGAAACTGAAGAAGCAAATAGTTGTAT 763
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 803 ACGCAGAGTTTTTCAGGGCATATTACATCAGACTGAAACTGAAGAAGCAAATAGTTGTAT 862
Query 764 TCAACT-ATTTGCTGGAGCACCAGTATCACCTCACGAAGTATAATGTACATTCAAAAGTT 822
|||| | ||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 863 TCAA-TCATTTGCTTGAGCATCAGTATCACCTCACGAAGTATAATGTACATTCAAAAGTT 921
Query 823 CCTCTGGTCCCGATGCAGAACGGTATTCATCCCATGGCATCTGTGAACAACATGCCCATG 882
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 922 CCTCTGGTCCCAATGCAGAACGGTATTCATCCTATGGCATCTGTGAACAACATGCCCATG 981
Query 883 GGATATCCAGTACTACAACATCCACAAATGCATGCTCAAGGTCATCCCCATCTTGATCCA 942
||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 982 GGATACCCAGTACTACAACATCCTCAGATGCATGCTCAAGGTCATCCCCATCTTGATCCT 1041
Query 943 ATGAGCTGTGGAATGTCAAGCTGCCATGTGGTTAATGGAGTCCCTGCACCTGCTAATTTC 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 ATGAGCTGTGGAATGTCAAGCTGCCATGTGGTTAATGGAGTCCCTGCACCTGCTAATTTC 1101
Query 1003 CAACCAATCAGGATCAACTCAGGGAATGATATGGTAATAGATACAACCATGGCTGAGCCA 1062
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1102 CAACCAATGAGGATCAACTCAGGGAATGATATGGTAATAGATACAACCATGGCTGAACCA 1161
Query 1063 ACTCCAATGATTCCACCAAGCAGTGGCATGTCGGATATGCCAGCGAGCCCAGCTTCTGTG 1122
||||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||
Sbjct 1162 ACTCCAATGATTCCACCAAATAGTGGTATGTCGGATATGCCAGTAAGTCCAGCTTCTGTG 1221
Query 1123 GCGTCAAGTGGACACTTTCCATTTGCTGCTTCAGACATGTCAGGGATGGGAATGGATACA 1182
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1222 GCGTCAAGCGGACACTTTCCATTTGCTGCTTCAGACATGTCAGGGATGGGAATGGACACG 1281
Query 1183 TCAGCTCTTGATTCTGCTTTCACATCTGATGT-GGCAACTTCAGTAGGGTTACAACTTGG 1241
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1282 TCAGCTCTTGACTCTGCTTTCACATCTGATGTCGG-AACTTCAGTAGGGTTACAACTTGG 1340
Query 1242 ATCAGATGGAGGAGCTGGAAATTCTAGAGACCCTCTCAGGCCATTTGATCAGATACCTTG 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 ATCAGATGGAGGAGCTGGAAATTCTAGAGACCCTCTCAGGCCATTTGATCAGATACCTTG 1400
Query 1302 GAACTTTAGCCTCTCTGACCTCACTGCAGATTTGTCAAATCTTGGAGATTTAGGGGCCTT 1361
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1401 GAACTTTAGTCTCTCTGACCTCACTGCAGATTTGTCAAATCTTGGAGATTTAGGGGCTTT 1460
Query 1362 AGGAAACTATCCCGGTTCACCTTTTCTTCCTTCCGATTCAGAGATTTTACTCGATTCTCC 1421
|||||||||||||||||| |||||||| || || ||||||||||||||||| || |||||
Sbjct 1461 AGGAAACTATCCCGGTTCTCCTTTTCTGCCATCTGATTCAGAGATTTTACTTGACTCTCC 1520
Query 1422 TGAACAAGAGGGCATAGATGAATTCTTTGTGGATTCGGTTCCAGGACCTCCATGTTCACA 1481
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1521 CGAACAAGAGGACATAGATGAATTCTTTGTGGATTCGATTCCAGGACCTCCATGTTCTCA 1580
Query 1482 GTCAGAAGAAGACAAGTCTTAATCAAGAAT-TCA-A---GATTA-T-GATA---T-TTG- 1529
||||||||||||||||||||||||||| | | | | ||| | | || | | ||
Sbjct 1581 GTCAGAAGAAGACAAGTCTTAATCAAGCTTATGATATTTGATCAATAGAAACAGTCTTAT 1640
Query 1530 -AT--AGCAAGCAAGCAAGGTTTGTGCCGTCTCGCTATATTAGAGAAAACCTCC 1580
|| |||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1641 TATCTAGCAAGCAAGCATTGTTTGTGCCGTTTCTCTATATTAGAGAAAACCTCC 1694
Score = 117 bits (63), Expect = 4e-25
Identities = 103/120 (86%), Gaps = 12/120 (10%)
Strand=Plus/Plus
Query 1607 ATAGACTTAGATTAATTTCTTAG-TG-TTCTTTATTGTACACCTTTATTTTGGGA-TTCT 1663
||||||||||||||||| || || || || ||||||||||||||||||||||||| || |
Sbjct 1757 ATAGACTTAGATTAATTGCTCAGTTGTTTGTTTATTGTACACCTTTATTTTGGGACTT-T 1815
Query 1664 GCAAATCATTGTATTATATCTAAGTATCTCCCAATAATCTATTTTCTTGTTGGATAGTTC 1723
|| || ||||| || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1816 GCTAAGCATTG-----TA--TAA-TATCTCCCAATAATCTATTTTCTTGTTGGATAGTTC 1867
Score = 93.5 bits (50), Expect = 6e-18
Identities = 60/65 (92%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 49 AGGACTTGTAAATTCTAAGCTTGCTTATGAGAGTAATGGCGTAGCAAAATCTTTATCCAA 108
||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 67 AGGACTTAAAAATTCCAAGCTCGCTTATGAGAGTAATGGCGTAGCAAAATCTTTATCTAA 126
Query 109 CTCTT 113
|||||
Sbjct 127 CTCTT 131
Score = 63.9 bits (34), Expect = 5e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1 AGCGGACGTCTCCGTCTCTTCTTCTGCTTCTAAC 34
||||||||||||||||||||||||||||||||||
Sbjct 1 AGCGGACGTCTCCGTCTCTTCTTCTGCTTCTAAC 34
> AT3G61700.2 | Symbols: | Plant protein 1589 of unknown function
| chr3:22835207-22839089 FORWARD LENGTH=1872
Length=1872
Score = 861 bits (466), Expect = 0.0
Identities = 911/1111 (82%), Gaps = 89/1111 (8%)
Strand=Plus/Plus
Query 436 TCTTCTACCCAAGTTTCACTTGAGTCCCAAGGTGAACA-AAAAGTTAATCAATCAATAGA 494
||||| || |||| ||||| ||| || |||||||| || |||| || | |||||||||
Sbjct 525 TCTTCCACTCAAGCTTCACATGACTCTCAAGGTGACCAGAAAA-CCAACCTATCAATAGA 583
Query 495 AGCCCCTATACAAGATTCTGGTTCTGTATCTGCCTCAAGTAATGACGGTAGGAAAGTTTC 554
|| ||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct 584 TGCTCCTATACAAGATTCTGGTTCTGTATCTGCTTCAAGCAATGACAGTAGGAAAGTTTC 643
Query 555 AAGGCAAGATATTGAACTTGTCCAAAATTTGATAGAAAGATGTCTTCAGTTGTACATGAA 614
| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 644 ACGACAAGATATTGAACTTGTTCAAAATTTGATAGAAAGATGTCTTCAGTTGTACATGAA 703
Query 615 CAGAGATGAGGTCGTCAAAACCCTCTTGACCCGTGCAAGGATTGACCCTGGTTTTACAAC 674
||||||||||||||| || || |||||||| ||||||||||| |||||||| ||||||||
Sbjct 704 CAGAGATGAGGTCGTGAAGACTCTCTTGACTCGTGCAAGGATAGACCCTGGATTTACAAC 763
Query 675 CTTAGTATGGCAGAAACTGGAAGAAGAAAACGAAGAGTTTTTCAGGGCATATTACATCAG 734
||| || ||||||||| ||||||||||||||| ||| ||||||||||||||||| || ||
Sbjct 764 CTTGGTTTGGCAGAAATTGGAAGAAGAAAACGCAGACTTTTTCAGGGCATATTATATAAG 823
Query 735 GCTGAAACTGAAGAAGCAAATAGTTGTATTCAA-CTATTTGCTGGAGCACCAGTATCACC 793
|||||||||||||||||||||| || | ||||| | ||||||| ||||||||||| || |
Sbjct 824 GCTGAAACTGAAGAAGCAAATAATTTTGTTCAATC-ATTTGCTTGAGCACCAGTACCATC 882
Query 794 TCACGAAGTATAATG-T--ACATTCAAAAGTTCCTCTGGTC-CCGATGCAGAACGGTATT 849
||| ||||||| | | || | ||||||||||||||| | ||||| || ||||| ||
Sbjct 883 TCATGAAGTATCCTCCTGGACCTCCAAAAGTTCCTCTGG-CACCGATACAAAACGGAATG 941
Query 850 CATCCCATGGCATCTGTGAACAACATGCCCATGGGATATCCAGTACTACAACATCCACAA 909
|||||||||||| |||| |||| |||| |||||||| ||||||||||||||||| |||
Sbjct 942 CATCCCATGGCACCTGTTAACA---TGCCGATGGGATACCCAGTACTACAACATCCTCAA 998
Query 910 ATGCATGCTCAAGGTCATCCCCATC-T-T-GATCCAATGAGCTGTGGAATGTCAAGCTGC 966
||||||| || ||| |||||||||| | | ||| ||||| | || | | | ||||||
Sbjct 999 ATGCATGTTCCAGGCCATCCCCATCATCTTGATGCAATGGGA-GT--A-T--CGAGCTGC 1052
Query 967 CATGTGGTTAATGGAGTCCCTGCACCTGCTAATTTCCAACCAATCAGGATCAACT-CAGG 1025
||||| ||||||||||||||||| |||||||||||||| || | || || || | |||
Sbjct 1053 CATGTTGTTAATGGAGTCCCTGCCCCTGCTAATTTCCATCCTTTGAGAATGAA-TACAGC 1111
Query 1026 GAATGATATGGTAATAGATACAACCATG-G--CTGA-GCCAACTCC--AA-TGATTCCAC 1078
|||||||||||| || |||||||| || | | || || |||||| || |||||||||
Sbjct 1112 GAATGATATGGTGATCGATACAAC--TGCGAAC-GATGC-AACTCCTCAAGTGATTCCAC 1167
Query 1079 CAAGCAGTGG--C-ATGTCGGATATGCCAGCGAGCCCAGCTTCTGTGGCGTCAAGTGGAC 1135
||| |||||| | ||| | || ||| |||||| |||||||||||||||||||||||||
Sbjct 1168 CAAACAGTGGTGCGATGCCTGAGATGGTAGCGAGTCCAGCTTCTGTGGCGTCAAGTGGAC 1227
Query 1136 ACTTTCCATTTGCTGCTTCAGACATGTCAGGG-ATGGGAATGGATACATCAGCT-CTTGA 1193
|||||||||||||||||||||||||||| ||| |||| |||||| || |||| | |||||
Sbjct 1228 ACTTTCCATTTGCTGCTTCAGACATGTC-GGGTATGGTAATGGACACTTCAG-TACTTGA 1285
Query 1194 TTCTGCTTTCACATCTGATGT-GGCAACTTCAGTAGGGTTACAACTTGGATCAGATGGAG 1252
||| || ||||||||||| || || | | | | | | | ||| || ||
Sbjct 1286 TTCGGCATTCACATCTGACGTTGG-A-C--C-G--G----A----T-GGA---GA---AG 1323
Query 1253 GAGCTGGAAATTCTAGAGAC-CCTCTCAGGCCATTTGATCAGATACCTTGGAACTTTAGC 1311
|||| || ||||| ||||| || |||||| ||||||||||||| |||||||||||||||
Sbjct 1324 GAGCCGGGAATTCCAGAGATTCC-CTCAGGTCATTTGATCAGATCCCTTGGAACTTTAGC 1382
Query 1312 CTCTCTGACCTCACTGCAGATTTGTCAAATCTTGGAGAT-T-TA-G--G--G-----G-- 1357
|| ||||| ||||| ||||||||||||||||| |||||| | || | | | |
Sbjct 1383 CTTTCTGATCTCACCGCAGATTTGTCAAATCTGGGAGATATGTATGTTGCAGATTTAGGA 1442
Query 1358 -CCTTAGGAAACTATCCCGGTTCACCTTTTCTTCCTTCCGATTCAGAGATTTTACTCGAT 1416
|||||||||||||||| || || || |||||||| || |||||||||||||| || |||
Sbjct 1443 GCCTTAGGAAACTATCCAGGCTCTCCATTTCTTCCATCTGATTCAGAGATTTTCCTGGAT 1502
Query 1417 TCTCCTGAACAAGAGGGCATAGATGAATTCTTT-GTGGATTCGGTTCCAGGACCTCCATG 1475
|||||||||||||||| |||||| || || ||| ||||||||||| || ||||||| |
Sbjct 1503 TCTCCTGAACAAGAGGACATAGAGGAGTT-TTTCGTGGATTCGGTGCCTGGACCTC---G 1558
Query 1476 TTC-ACAGTCAGAAGAAGACAAGTCTT-AAT 1504
||| | | ||||| ||||| ||| ||| |||
Sbjct 1559 TTCTA-ATTCAGATGAAGAGAAGCCTTGAAT 1588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85190324865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5