BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483800

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46455.1 | Symbols:  | OxaA/YidC-like membrane insertion pro...   353    6e-97


> AT2G46455.1 | Symbols:  | OxaA/YidC-like membrane insertion protein 
| chr2:19069629-19071004 REVERSE LENGTH=868
Length=868

 Score =  353 bits (191),  Expect = 6e-97
 Identities = 258/289 (89%), Gaps = 10/289 (3%)
 Strand=Plus/Plus

Query  1    ATGTCTTCTAAACCAGAAGAATTGTGTTCAAAGATTGATGCTTTTGGAAATGTTGTTGAG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  403  ATGTCTTCTAAACCAGAAGAATTGTGTTCAAAGATTGATGCTTTTGGAAATGTTGTTGAA  462

Query  61   GAATCCGTGGAAGCAATGGCCACTAATGTCTCTACTATAGATGAGTGTACTGC-AGCAAT  119
            ||||| ||||||||||| | |||||||||| | |||||||||||||||||||| |  || 
Sbjct  463  GAATCTGTGGAAGCAATTGTCACTAATGTCGCCACTATAGATGAGTGTACTGCTAT-AAC  521

Query  120  TGAGAAAT-TTTCTTTCCC-TG-GGGACTTCGTGCAGTATGTGATTAATGGAATCCATGA  176
            |||||  | ||| |||||| || |||| ||||||||||||||||||||||||||||| ||
Sbjct  522  TGAGAG-TGTTT-TTTCCCCTGAGGGA-TTCGTGCAGTATGTGATTAATGGAATCCACGA  578

Query  177  GCTTACTGGCTTTAATTGGTCGATGTCGATTGTTCTTACGGCTTTTCTGGTTAGTGTACT  236
            ||| |||||||| ||||||| |||||| ||||||||||| |||||||| |||| ||||||
Sbjct  579  GCTCACTGGCTTCAATTGGTGGATGTCAATTGTTCTTACAGCTTTTCTTGTTACTGTACT  638

Query  237  CATGTCACCAGTTTCTATGCGGGTTCAGA-TACAAGCTCTGGAACTACA  284
             ||||||||||| |||||||||||||||| | | ||||||||| |||||
Sbjct  639  GATGTCACCAGTCTCTATGCGGGTTCAGAAT-CTAGCTCTGGAGCTACA  686


 Score =  171 bits (92),  Expect = 6e-42
 Identities = 100/104 (96%), Gaps = 0/104 (0%)
 Strand=Plus/Plus

Query  285  GATAACGACCATGGCTAAGAAAATCCCTCAACTTTCAACTTCAGACAGCCTATACATCTT  344
            |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct  763  GATAACGACCATGGCTAAGAAAATCCCTGAACTTTTAACTCCAGACAGCCTATACATCTT  822

Query  345  GCCTCTACTGGCAGGCTTCACTTTCTGGTTCTCATCAGAGGTCT  388
            |||| |||||||||||||||||||||||||||||||||||||||
Sbjct  823  GCCTATACTGGCAGGCTTCACTTTCTGGTTCTCATCAGAGGTCT  866



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5