BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483801
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46470.1 | Symbols: OXA1L | inner membrane protein OXA1-like... 2532 0.0
> AT2G46470.1 | Symbols: OXA1L | inner membrane protein OXA1-like
| chr2:19072313-19075123 FORWARD LENGTH=1618
Length=1618
Score = 2532 bits (1371), Expect = 0.0
Identities = 1545/1626 (95%), Gaps = 23/1626 (1%)
Strand=Plus/Plus
Query 1 TTTTGGTTGCGATGGTCGTCGTCagag-agagagagaCGCGAAGTCCTGATCGCTCTCTC 59
|||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 9 TTTTTGTTGCGATGGTCGTCGTCAG-GTAGAGAGAGACGCGAAGTCCTGATCGCTCTCTC 67
Query 60 AGGTCTTAGCCCTAAGACTACGAGTCGACTCAGCCGAACTGTGAATGCAGTTTTGATTTC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 AGGTCTTAGCCCTAAGACTACGAGTCGACTCAGCCGAACTGTGAATGCAGTTTTGATTTC 127
Query 120 AATTCCTTAGCTTCTTAGTTATGGCTACTTGCTTGCGTGGTATCACGAAGAGAGTTAATC 179
||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 128 AATCCCTTAGGATCTTAGTTATGGCTACTTGCTTGCGTGGAATCACGAAGAGAGTTAATC 187
Query 180 TTTTACAGAGACGAGTGTATCCATCGTGTGGTCATCTAATTCGTGATGATAGAGATGAAA 239
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TTCTACAGAGACGAGTTTATCCATCGTGTGGTCATCTAATTCGTGATGATAGAGATGAAA 247
Query 240 CTAAATCTGATTCGTCGAATTCGCATACAATGATTCGTAAAGTCTTAGCAAGTAATGGGA 299
||||||||| | || |||| |||||||||||||| ||||||||||| |||||||||
Sbjct 248 CTAAATCTG-GT--TC---TTCGGATACAATGATTCGTGAAGTCTTAGCACGTAATGGGA 301
Query 300 CTAGCAAGCTTAGCTCTATCTCTGTGGAGAGGTATCATCAGTCGTTTTCGTTTTCTGGGC 359
||| |||||||||||||| | || ||| ||| || |||||||| ||| | | |||| |
Sbjct 302 CTAATAAGCTTAGCTCTATGTTTGCGGATAGGCATTATCAGTCG-TTT-G-CTACTGGTC 358
Query 360 CATTGGGTCTTGGATTGTCTTCGTGTCGGTATATGAGTTCTACACCACCGGAATGGTCTG 419
| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 359 CGTTGGGTCTTGGATTGTCTTCGTGTCGGCATATGAGTTCTACACCACCAGAATGGTCTG 418
Query 420 ATAAAGTTGATGGTATCGACTTTGTGGCTACGGAAGTTGTTCCCGATGAAATCATTGAAG 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 ATAAAGTTGATGGTATCGACTTTGTGGCTACGGAGGTTGTTCCCGATGAAATCATTGAAG 478
Query 480 CTGTCACGACCACAAGCCAAGC---TGTTCCTGCTATAAACGAGGTTGCTATTGCTGCTG 536
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 CTGTGACCACCACAAGCCAAGCTGTTGTTCCTGCTATAAACGAGGTTGCTATTGCTGCTG 538
Query 537 CGGATTCTGCTTTTCCTGTTGCTGCTTTGCAGCATTTGATTGATGCTGTGCATTCCTTTA 596
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CCGATTCTGCTTTTCCTGTTGCTGCTTTGCAGCATTTGATTGATGCTGTGCATTCCTTTA 598
Query 597 CTGGCCTGAACTGGTGGGCTTCAATAGCCTTGACAACTGTTCTTATTCGTGGAGTTACAA 656
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 599 CTGGCCTGAACTGGTGGGCTTCAATAGCCTTGACAACTGTTCTTATCCGTGGAGTTACAA 658
Query 657 TACCTATTCTTTTGAATCAACTAAAGGCTACTTACAAACTCAATGTTCTGAGGCCACAAC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TACCTATTCTTTTGAATCAACTAAAGGCTACTTACAAACTCAATGTTCTGAGGCCACAAC 718
Query 717 TGGAGGAGTTAAGACAAGAGATGAGCACTAAGGCTCAGGATCCTGAAGCCATGGCCGAAG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 TGGAGGAGTTAAGACAAGAGATGAGCACTAAGGCTCAGGATCCTGAAGCCATGGCAGAAG 778
Query 777 GTCAAAGACGGATGCAATTATTGTTTAAAGAACATGGAGTAACTCCATTTACCCCCCTCA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTCAAAGACGGATGCAATTATTGTTTAAAGAACATGGAGTAACTCCATTTACCCCCCTCA 838
Query 837 AAGGACTTATTATTCAAGGTCCCATCTTCATCAGCTTTTTCTTTGCGATCAGGAATATGG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AAGGACTTATTATTCAAGGTCCCATCTTCATCAGCTTTTTCTTTGCGATCAGGAATATGG 898
Query 897 CTGAGAAAGTCCCATCATTTAAAACCGGGGGAACTCTTTGGTTTACTGATCTCACCACTG 956
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 899 CCGAGAAAGTCCCATCATTTAAAACCGGGGGAACTCTTTGGTTTACTGATCTGACCACCA 958
Query 957 CAGATACCACATATATCTTGCCACTCCTCACTGCAGTGACTTTCTTGATTATGGTAGAGT 1016
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CAGATACCACTTATATCTTGCCACTCCTCACTGCAGTGACTTTCTTGATTATGGTAGAGT 1018
Query 1017 CAAATATGCAGGAAGGTCTTGAAGGCAATCCAGTAGCTGGAACTATGAAGAAATTCTCAA 1076
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CAAACATGCAGGAAGGTCTTGAAGGCAATCCAGTAGCTGGAACTATGAAGAAATTCTCAA 1078
Query 1077 GAATCATTGCCTTTCTTTCTATTCCAGTTTTGATAGGCATTGAAAAGGCATTGTTCTGTT 1136
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1079 GAATCATTGCCTTCCTTTCTATTCCAGTTTTGATTGGCATTGAAAAGGCATTGTTTTGTT 1138
Query 1137 ACTGGCTTACTTCCAACCTGTTTACTCTTGTGTATGGATTAACATTAAGACGTCCTGATG 1196
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ACTGGCTTACTTCCAACCTATTTACTCTTGTGTATGGATTAACATTAAGACGTCCTGATG 1198
Query 1197 TGAGGAAGTTCTTGAATCTCCCAGATGTTGTCAACTCTTCTACTAGGCAGCCATCACCGG 1256
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGAGGAAGCTCTTGAATCTCCCAGATGTTGTCAACTCTTCTACTAGGCAGCCATCACCGT 1258
Query 1257 CGTCGCCTTTGCCATTTTCCTTTCCCGAGACAAAAGACCAAAGTGTTGTTGCTCAAGAAA 1316
| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1259 CTTCGCCTTTGCCATTTTCCTTTGCCGAGCCAAAAGACCAAAGTGTTGTTGCTCAAGAAA 1318
Query 1317 AACCTCCAATGTCGTCCTCCGAGTCATCTTCAAGTGTTCCAGATAGAAGAATCTCACGGA 1376
||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AACCTCCTATGTC--C-TCCGAGTCATCTTCAAGTGTTCCAGATAGAAGAATCTCACGGA 1375
Query 1377 GTTCAGTTCTGAATCAGAGAATCAGAACTCTGGAGAGACAATTCAAGGACCGAAAGAACA 1436
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1376 GTTCAGTTCTGAATCAGAGAATCAGAACTCTGGAGAGACAACTCAAGGACCGAAAGATCA 1435
Query 1437 AGAAGTGAGAGGTTCTTTTATGTGAGA-TTTGTTTTGCTAAAACTAGCCGATACTGAAGA 1495
||||||||||| ||||||||||| || ||| |||||||||||||||||||||||||| |
Sbjct 1436 AGAAGTGAGAGATTCTTTTATGTCAGTGTTT-TTTTGCTAAAACTAGCCGATACTGAAAA 1494
Query 1496 AGGAAT-AAGTATCTTCGGGAAATTAAGATTTTGAGTTAATGGGAAAAATTTCAGTTGAA 1554
|| || ||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1495 AG-AACCAAGTATCCTCGGGAAATTAAGATTTTGAGTTAATAGGAAAAATTTCAGTTGAA 1553
Query 1555 CCTTTGCATTGAAATGAATTAGCTTGATTTTAACTTGAAGATAAATGGATAAA-GTAAAT 1613
||||||||||||||||||||||||| |||||||||||||||| |||| ||||| ||||||
Sbjct 1554 CCTTTGCATTGAAATGAATTAGCTTAATTTTAACTTGAAGATGAATG-ATAAAAGTAAAT 1612
Query 1614 TTTCCC 1619
||||||
Sbjct 1613 TTTCCC 1618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79969468185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5