BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483803

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46490.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   931    0.0  


> AT2G46490.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G35110.1); 
Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; 
Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19079406-19080053 
FORWARD LENGTH=648
Length=648

 Score =  931 bits (504),  Expect = 0.0
 Identities = 605/651 (93%), Gaps = 18/651 (3%)
 Strand=Plus/Plus

Query  1    AGATCCTTATTCTTCTCCACCGGATCTCGATATCGGAGAATTAGCTAAACGATGGCCGCC  60
            |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  1    AGATCCTTATTCTTCTCCACCGGATCTCGAAATCGGAGAATTAGCCAAACGATGGCCGCC  60

Query  61   GACGGAATATTCCGCAGCATCTTCGAAGGTTGTATCTCCGGCCTTGATTCCGCCATCGAG  120
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  61   GACGGAATATTCCGCAGCATCTTCGAGGGTTGTATCTCCGGCCTTGATTCCGCCATCGAA  120

Query  121  CGGCGTCCTTACCACAAAAACTGCGGATGTGCTCTCCACGATAAATCAAGCGGCGCTGGG  180
            ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  121  CGGCGTCCTTACCACAAAAACTGCGGATGTGCTCTTCACGATAAATCAAGTGGCGCTGGG  180

Query  181  AAAAATCAAAATCAACGACGGCCGCCGTCTTGTCGCCGCCACGGAAGCTCAGAGAGCATT  240
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  181  AAAAATCAAAATCAGCGACGGCCGCCGTCTTGTCGCCGCCACGGAAGCTCAGAGAGCATC  240

Query  241  TCGTTTCCGATCCGACGGTCTTGGAGCGAAGGCAACATCATGGCTATGAatctcttctcc  300
            ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TCGTTCCCGATCCGAAGGTCTTGGAGCGAAGGCAACATCATGGCTATGAATCTCTTCTCC  300

Query  301  tcatcgtcgtcttcttctaatctccaatcgctttcgtcgtcttcttctctctcaaatctG  360
            ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  301  TCATCGTCGTCTTCTTCTAATCTCCAATCGCTTTCTTCGTCTTCTTCGCTCTCAAATCTG  360

Query  361  GCATCAGATTTACCGGTGGATGATGCTGCGACGGAGGAACCGAGCAGATCTAATCAGCAG  420
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct  361  GCATCAGATTTACCGGTGGATAATGCTGCGACGGAGGAACCGAGCAGATCTAATAAACAG  420

Query  421  CTGCGATGGACGATTGACGAAGGTGAAGATGATTGATGTGATTGCTGATGATGATCAATT  480
            || |||||||||||||| ||||||||||||||||||||  || |   |||||||||||||
Sbjct  421  CTACGATGGACGATTGATGAAGGTGAAGATGATTGATG--AT-G---ATGATGATCAATT  474

Query  481  CCAGGTTGTTAATTTTTGCTATTCTCTGTTTAATTAATTTTCTTAATAATTGTATTTGAG  540
            |||||||||||| |||||||| |||||||||||||||  |||| ||| ||||||||||||
Sbjct  475  CCAGGTTGTTAACTTTTGCTAATCTCTGTTTAATTAAACTTCTCAATCATTGTATTTGAG  534

Query  541  GACAAAATAATGTC--T--T-GTAtttttatttttttGTAAGAGAAACGAAAATGTTTGA  595
             || ||||||||||  |  | |||||||||||||||||||| ||||||||||||||||| 
Sbjct  535  AACCAAATAATGTCAGTCATTGTATTTTTATTTTTTTGTAAAAGAAACGAAAATGTTTG-  593

Query  596  CGGTTGTTTACAATTGAAATTTTGAATGATTAGCATATAAACTTGTGGAGA  646
               || |  || ||||||| |||||||||||||||||||||||||||||||
Sbjct  594  ---TT-T--ACGATTGAAACTTTGAATGATTAGCATATAAACTTGTGGAGA  638



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31195405287


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5