BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483804
Length=1980
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46495.1 | Symbols: | RING/U-box superfamily protein | chr2... 1452 0.0
AT2G46494.1 | Symbols: | RING/U-box superfamily protein | chr2... 1125 0.0
AT2G46493.1 | Symbols: | RING/U-box superfamily protein | chr2... 701 0.0
AT1G28040.1 | Symbols: | RING/U-box superfamily protein | chr1... 351 1e-95
> AT2G46495.1 | Symbols: | RING/U-box superfamily protein | chr2:19084134-19085704
REVERSE LENGTH=1119
Length=1119
Score = 1452 bits (786), Expect = 0.0
Identities = 938/1010 (93%), Gaps = 16/1010 (2%)
Strand=Plus/Plus
Query 1 ATGACTTTCTCAAAACAACTCTTTCTTTACCTCTTCTTCCTCTTCCCTCTCCTACACGCT 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTTTCTCAAAACAACTCTTCCTTTACCTCTTCTTCCTCTTCCCTCTCCTACACGCT 60
Query 61 TCACACACA-AATCAATGCTCTTCTTCCTCGTGCGGTCTTGACGATGTCCATGTCCGTTT 119
|||||| || || ||||||||||| ||||| ||||||| ||| |||||||||||||||||
Sbjct 61 TCACACCCACAA-CAATGCTCTTCCTCCTCATGCGGTCGTGATGATGTCCATGTCCGTTT 119
Query 120 CCCTTTTTGGTTACTCTCGAAACAACAGGAGTTCTGTGGCCATGCCGGATTTAATCTTCA 179
|||||| ||||||||||| ||||| | ||| ||||||||||||||||||||||||| ||
Sbjct 120 CCCTTTCTGGTTACTCTCAAAACAGCCTGAGCTCTGTGGCCATGCCGGATTTAATCTCCA 179
Query 180 ATGCACAAG-TAGTCTCACGACAGCTCTCAAGCTTCCTAATTTCGGAACATTTCTTGTCC 238
|||||| || ||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 ATGCAC-AGCTAGTCCCAAGACAGCTCTCAAGCTTCCTAATTCCGGAACATTTCTTGTCC 238
Query 239 GAGAGATCGACTATATAAGCCAGCAGATTCGTCTCCATGACCCTGAAAGTTGCTTGGCAA 298
|||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 239 GAGAGATCGACTATTTAAGCCAGCAGATTCGTCTCTATGACCCTGAAAATTGCTTGGCAA 298
Query 299 GAAAGCTTTTGACCTTTGACATATCAGGATCCCCTTTCTCTGCTCTCTACCTTGCCAGCT 358
|||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |||||
Sbjct 299 GAAAGCTTTTGACCTTCGACATATCAAGATCTCCTTTCTCTGCTCTCTACCTTGTCAGCT 358
Query 359 ACACGTTCTTGAGCTGTCCTAATGAGGTAGCAAAGTCGTCCAGGTTTGACTCCATCCCAT 418
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 359 ACACGTTCTTGAGCTGTCCTAATGAGGTTGCAAAGTCGTCCAGGTTTGACTCCATCCCAT 418
Query 419 GTTTAGGCAATTCAACGACCTCGTTCTTGGCTACAACTAGTTTGGATCTCGCAAAATCTA 478
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 GTCTAGGCAATTCAACGACCTCGTTCTTGGCTACAACTAGTTTGGATCTCGCGAAATCTA 478
Query 479 TGCTGCCTTCTTGTCAGATCGTCAAGACATCA-ACTATTCCGGTTTCTCGGCGAGTTACT 537
|||||||||||||||||||||||||||||| | | | ||||||||||||||||||||| |
Sbjct 479 TGCTGCCTTCTTGTCAGATCGTCAAGACATTAGA-TGTTCCGGTTTCTCGGCGAGTTATT 537
Query 538 GCCGGA-AAATCAAGATTCTCGACTGATGTCAACGATAAAGACCTTTGGCTGAAATGGGA 596
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCC-AAGAAATCAAGATTCTCGACTGATGTCAACGATAAAGACCTTTGGCTGAAATGGGA 596
Query 597 TTCACCAAGTTGTAGCAATTGTGAGAGGGATTATTTGAGATGTGGATTCATAAGCAATAC 656
||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 597 TTCTCCAAGTTGTAGCGATTGTGAGAGGGATTTTTTGAGATGTGGATTCAGAAGCAACAC 656
Query 657 TTCTCTCCAAGTCAAATGCTTCCCATTTGAAAAATCCGGCAACAACAACACGAGACTACA 716
|||||||||||||||||||||||| |||||||| |||||| |||||| | || || |||
Sbjct 657 TTCTCTCCAAGTCAAATGCTTCCCTTTTGAAAATTCCGGCTACAACA-CG-GA-ACCACA 713
Query 717 AGTGCTTAAAATTATGA-TCCTGAGCATAATTGGACCGGTCATGATCTTTGCTACGTGTA 775
||||||||| ||||| | |||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 714 AGTGCTTAAGATTAT-ACTCCTGAGCATAATTGGACCGCTCACGATCTTTGCTACTTGTA 772
Query 776 TTGCAATCGGAGTTTGCACCTCTGAAAGATTCGCTTCCCGGATACAACGCAACGTGGCTA 835
||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 773 TTGCAGTCGGAGTTTGCACCTCCGAAAGATTCGCTTCCCTGATACAACGCAACGTGGCTA 832
Query 836 TCGCCGCCTTGCAGCCAAACGAGGTTATAATCACGACGGGCCTTGACGAGTCTACAATAG 895
||||||||||||||||||||||||||||| |||||||||| ||||| || |||| |||||
Sbjct 833 TCGCCGCCTTGCAGCCAAACGAGGTTATAGTCACGACGGGTCTTGATGAATCTATAATAG 892
Query 896 AATCATATAAGAAAATGGAATTAGGAGAGAGTAGAAGATTACCGGGAACTAATGAT-AT- 953
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 893 AATCATATAAGAAAACGGAATTAGGAGAGAGTAGAAGATTACCGGGAAATAATGATGATA 952
Query 954 T-GTTTGCCCCATTTGTTTATCGGAGTATGTTAGCAAAGAGACCGTGCGG 1002
| |||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 953 TTGTTTGCCCTATTTGTTTATCGGAGTATGCTAGCAAAGAGACCGTGCGG 1002
Score = 322 bits (174), Expect = 8e-87
Identities = 674/906 (74%), Gaps = 71/906 (8%)
Strand=Plus/Plus
Query 1105 CTTCCT-ATGTCCGGAACATTTCTTGTCC-ATGATATCGACTACAGAAGGCAAAAGATTT 1162
|||||| || ||||||||||||||||||| | || |||||||| ||| || |||||
Sbjct 211 CTTCCTAAT-TCCGGAACATTTCTTGTCCGA-GAGATCGACTATTTAAGCCAGCAGATTC 268
Query 1163 ATATCAACGACCCTGAAAACTGTTTGGCTAA-ACGGCTTTTAACCTTCAATATTTCAGGA 1221
| || | ||||||||||| || ||||| || | |||||| |||||| | || ||| ||
Sbjct 269 GTCTCTATGACCCTGAAAATTGCTTGGC-AAGAAAGCTTTTGACCTTCGACATATCAAGA 327
Query 1222 TCTCCTTTCTCTCCTCGCT-TCGAGATCTTCTACACATTCTTGA-CTTGTCCTAATGAGG 1279
|||||||||||| ||| || | | || |||||| ||||||| | |||||||||||||
Sbjct 328 TCTCCTTTCTCTGCTCTCTACCTTG-TCAGCTACACGTTCTTGAGC-TGTCCTAATGAGG 385
Query 1280 TCGTGTTGCCGTCTTGGTAT-CCGTCCATTCCTTGCCTAAGCAATTCCACCTCCTCCTTC 1338
| | | |||| ||| | | ||||| || || ||| ||||||| || |||| |||
Sbjct 386 TTGCAAAGTCGTCCAGGTTTGAC-TCCATCCCATGTCTAGGCAATTCAACGACCTCGTTC 444
Query 1339 TTCGCCACGTCTAATTTTGCTCTCGC-ACAGTCTATGCTACCTTCTTGTCAGATCGTGAA 1397
|| || || ||| ||| | |||||| | | |||||||| ||||||||||||||||| ||
Sbjct 445 TTGGCTACAACTAGTTTGGATCTCGCGA-AATCTATGCTGCCTTCTTGTCAGATCGTCAA 503
Query 1398 GAGATTACATGTTCCCTCTAAT-TC-GC-CG-T-TTG--GAGAAA-CAAGATTCTCGAGC 1449
|| |||| ||||| || | | || || | | ||| ||||| |||||||||||| |
Sbjct 504 GACATTAGATGTT-CCGGT-TTCTCGGCGAGTTATTGCCAAGAAATCAAGATTCTCGA-C 560
Query 1450 T-ACCTCAACAATCAAA-ACCTCCT-GTTGGAGTGGGACTCGCCTGA-TTGCAGAGGTTG 1505
| | ||||| || ||| |||| | | || | ||||| || || | ||| || | |||
Sbjct 561 TGATGTCAACGAT-AAAGACCT-TTGGCTGAAATGGGATTCTCC-AAGTTGTAGCGATTG 617
Query 1506 TGAG-GTAGATTACTTGAGATGTGGATTTAAGAA-CAAGGCATCCCTCGAAATCAAATGC 1563
|||| | |||| |||||||||||| || |||| ||| | || ||| || ||||||||
Sbjct 618 TGAGAG-GGATTTTTTGAGATGTGGA-TTCAGAAGCAACACTTCTCTCCAAGTCAAATGC 675
Query 1564 TTTGATGCTAAAAAATCCGGTCATTTAAGTAGTGG-AGTACTGGTAC-T-AG-TTATAAG 1619
|| | | |||| ||||| | | || | || | || || | | || |||||
Sbjct 676 TTCCCTTTTGAAAATTCCGG-C-TACAA-CA-CGGAACCACAAGTGCTTAAGATTATACT 731
Query 1620 CTTG-TCAGCAGT-CACCGTCT-TTG-TCTTTCCTACTTGTATCGCTA-TCCGCCTTTAC 1674
| || || | | |||| || | ||||| |||||||||| || | || | ||| |
Sbjct 732 CCTGAGCATAATTGGACCG-CTCACGATCTTTGCTACTTGTATTGC-AGTCGGAGTTTGC 789
Query 1675 AACTCCGAAAGCTTCGATTCCCTAGCT--ATCGCAGCCGCGACCGT-GATG-C-AGCAGC 1729
| ||||||||| |||| |||||| | | | |||| || | | | | | | |||||
Sbjct 790 ACCTCCGAAAGATTCGCTTCCCT-GATACAACGCA-ACGTGGCTATCGCCGCCTTGCAGC 847
Query 1730 CAAGA-GAGGTTATGA-CCACGAGGGGTCTCGACCAATCTACGATCGAAACAT-TCAAGA 1786
||| | |||||||| | ||||| |||||| || |||||| || ||| ||| | ||||
Sbjct 848 CAA-ACGAGGTTAT-AGTCACGACGGGTCTTGATGAATCTATAATAGAATCATAT-AAGA 904
Query 1787 AAATGGAGTTGGGAGAAAGTAGGAGGATTTCCGGG-ACTAATG--G-TATTGTATGTCCG 1842
||| ||| || ||||| |||| || |||| ||||| | ||||| | |||||| || ||
Sbjct 905 AAACGGAATTAGGAGAGAGTA-GAAGATTACCGGGAAATAATGATGATATTGTTTGCCCT 963
Query 1843 ATTTGTTTATCAGAGTATGCGAGCAAAGAGACCGTACGGTTCATACCGGAATGTGACCAT 1902
||||||||||| |||||||| |||||||||||||| |||| |||||| |||||||| |||
Sbjct 964 ATTTGTTTATCGGAGTATGCTAGCAAAGAGACCGTGCGGTGCATACCAGAATGTGATCAT 1023
Query 1903 TGCTTTCAC-GTGAAATGTATTGATGTATGGCTCAAGATTCATGGTTCGTGTCCTCTTTG 1961
||||| ||| ||| ||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 1024 TGCTTCCACAGTG-AATGTATAGATGTGTGGCTTAAGATTCATGGTTCGTGTCCTCTTTG 1082
Query 1962 TCGGAA 1967
||||||
Sbjct 1083 TCGGAA 1088
> AT2G46494.1 | Symbols: | RING/U-box superfamily protein | chr2:19082344-19083811
REVERSE LENGTH=1089
Length=1089
Score = 1125 bits (609), Expect = 0.0
Identities = 868/992 (88%), Gaps = 22/992 (2%)
Strand=Plus/Plus
Query 1003 CCACTCAGATGTGGACCCTTAGATGTCCCCATTCGTTTTCCTTTCTGTGACCATGCACAA 1062
|||| |||||||||||||||||| |||||||| ||||| |||||||| |||||| | |
Sbjct 106 CCACACAGATGTGGACCCTTAGAAGTCCCCATCCGTTTCCCTTTCTGCGACCATCCGTTA 165
Query 1063 TTCAACCTCCACTGTACCGATCTCAATAAGACAGTCCTAGAACTTCCTATGTCCGGAACA 1122
||||| |||| ||| ||| |||||||||| ||||||||| ||||||||||||||||||||
Sbjct 166 TTCAATCTCCTCTGCACCAATCTCAATAATACAGTCCTACAACTTCCTATGTCCGGAACA 225
Query 1123 TTTCTTGTCCATG-ATATCGACTACAGAAGGCAAAAGATTTATATCAACGACCCTGAAAA 1181
||| ||||||| | ||||||||||||||| |||| |||||||||||||||| ||||||||
Sbjct 226 TTTTTTGTCCA-GTATATCGACTACAGAAAGCAACAGATTTATATCAACGATCCTGAAAA 284
Query 1182 CTGTTTGGCTAAACGGCTTTTAACCTTCAATATTTCAGGATCTCCTTTCTCTCCTCGCTT 1241
||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 285 CTGTTTGGCTAAAAGGCTTTTAACCTTCAACATTTCAGGATCCCCTTTCTCTCCTCGCTT 344
Query 1242 CGAGATCTTCTACACATTCTTGACTTGTCCTAATGAGGTCGTGTTGCCGTCTTGGTATCC 1301
|| | ||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 345 TGATACCTTATACACGTTCCTGACTTGTCCTAATGAGCTCGTGTTGCCGTCTTGGTATCC 404
Query 1302 GTCCATTCCTTGCCTAAGCAATTCCACCTCCTCCTTCTTCGCCACGTCTAATTTTGCTCT 1361
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GTCCATTCCTTGCCTAAGTAATTCCACCTCCTCCTTCTTCGCCACGTCTAATTTTGCTCT 464
Query 1362 CGCACAGTCTATGCTACCTTCTTGTCAGATCGTGAAGAGATTACATGTTCCCTCTAATTC 1421
|||| |||||||||| |||||||||||||||||||||||| || ||||||| || ||||
Sbjct 465 CGCAGAGTCTATGCTTCCTTCTTGTCAGATCGTGAAGAGAATATATGTTCCGGCTGATTC 524
Query 1422 GCCGTTTGGAGAAACAAGATTCTCGAGCTACCTCAACAATCAAAACCTCCTGTTGGAGTG 1481
|||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||
Sbjct 525 GCCGTTTGCAGAAACAAGATTCTCGAGCTACCTCAA---TCAAAGCCTCTTGTTGGAGTG 581
Query 1482 GGACTCGCCTGATTGCAGAGGTTGTGAGGTAGATTACTTGAGATGTGGATTTAAGAACAA 1541
| |||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 582 GAACTCGCCTAATTGCAGAGGTTGTGAGATAGATTACTTGAGATGTGGATTCAAGAACAA 641
Query 1542 GGCATCCCTCGAAATCAAATGCTTTGATGCTAAAAAATCCGGTCATTTAAGTAGTGG-AG 1600
|| |||| |||| | |||||||| | |||||||||||||||||||||||| || || ||
Sbjct 642 AGCCTCCCCCGAAGTAAAATGCTTCGGTGCTAAAAAATCCGGTCATTTAAGCAG-GGCAG 700
Query 1601 TACTGGTACTAGTTATAAGCTTGTC-AGCA--GTCACC-GTCTTTGTCTTTCCTACTTGT 1656
|| | | | || ||||| | ||||| | | | | | ||| | ||||| |||||||
Sbjct 701 TAGTAGCAGTACTTATATGTTTGTCCATAATAGG-AGCAGTCATCCTCTTTGTTACTTGT 759
Query 1657 ATCGCTATCCGCCTTTACAACTC-C-GAAAGCTTCGA--TTCC-C--TAGCTATCG-CAG 1708
||||||||||| || ||||| | | || | | ||| || | || | | || |||
Sbjct 760 ATCGCTATCCGGATTCACAACACACCGAGA-CGACGACATTGGGCAGTACC-AGCGGCAG 817
Query 1709 CCGCGACCGTGATGCAGCAGCCAAGAGAGGTTATGACCACGAGGGGTCTCGACCAATCTA 1768
|||| ||||| |||||||| ||||||||||||||| ||||||||||||| ||||||||||
Sbjct 818 CCGCAACCGTAATGCAGCAACCAAGAGAGGTTATGGCCACGAGGGGTCTTGACCAATCTA 877
Query 1769 CGATCGAAACATTCAAGAAAATGGAGTTGGGAGAAAGTAGGAGGATTTCCGGGACTAATG 1828
| || |||| || ||||| ||||||||||||||||||||| ||| | ||||||||||||
Sbjct 878 CAATAGAAAAATACAAGACAATGGAGTTGGGAGAAAGTAGAAGGCCTCCCGGGACTAATG 937
Query 1829 GTATTGTATGTCCGATTTGTTTATCAGAGTATGCGAGCAAAGAGACCGTACGGTTCATAC 1888
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 938 GTATTGTATGTCCCATTTGTTTATCAGAGTATGTGAGCAAAGAGACCGTACGGTTTATAC 997
Query 1889 CGGAATGTGACCATTGCTTTCACGTGAAATGTATTGATGTATGGCTCAAGATTCATGGTT 1948
| ||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||
Sbjct 998 CTGAATGTGACCATTGCTTCCACGCGAAATGTATAGATGTGTGGCTCAAGATTCATGGTT 1057
Query 1949 CGTGTCCTCTTTGTCGGAACTCACGTGCGTGA 1980
| ||||||||||||||||||||||||||||||
Sbjct 1058 CATGTCCTCTTTGTCGGAACTCACGTGCGTGA 1089
> AT2G46493.1 | Symbols: | RING/U-box superfamily protein | chr2:19080254-19081751
REVERSE LENGTH=1064
Length=1064
Score = 701 bits (379), Expect = 0.0
Identities = 463/503 (92%), Gaps = 8/503 (2%)
Strand=Plus/Plus
Query 1003 CCACTCAGATGTGGACCCTTAGATGTCCCCATTCGTTTTCCTTTCTGTGACCATGCACA- 1061
||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |
Sbjct 141 CCACTCAGATGTGGACCCTTAGAAGTCCCCATTCGTTTCCCTTTCTGTAACCATGC-GAG 199
Query 1062 ATTCAACCTCCACTGTACCGATCTCAATAAGACAGTCCTAGAACTTCCTATGTCCGGAAC 1121
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 200 ATTCAATCTCCACTGCACCGATCTCAATAAGACTGTCCTAGAACTTCCTATGTCCGGAAC 259
Query 1122 ATTTCTTGTCC-ATGATATCGACTACAGAAGGCAAAAGATTTATATCAACGACCCTGAAA 1180
||||||||||| | ||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 260 ATTTCTTGTCCGA-GATATCGACTACAGAAGGCAAAAAATCTATATCAACGACCCTTAAA 318
Query 1181 ACTGTTTGGCTAAACGGCTTTTAACCTTCAATATTTCAGGATCTCCTTTCTCTCCTCGCT 1240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 319 ACTGTTTGGCTAAACGGCTTTTAACCTTCAACATTTCAGGATCTCCTTTCTCTCCTCACT 378
Query 1241 TCGAGATCTTCTACACATTCTTGACTTGTCCTAATGAGGTCGTGTTGCCGTCTTGGTATC 1300
|||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 379 TCGATATCTTATACACGTTCTTGTCTTGTCCTAATGAGGTCGTGTTGCCGTCTTGGTATC 438
Query 1301 CGTCCATTCCTTGCCTAAGCAATTCCACCTCCTCCTTCTTCGCCACGTCTAATT-TTGCT 1359
|||| |||||||||||||||||||| || || |||||||||||||||||||||| || ||
Sbjct 439 CGTCGATTCCTTGCCTAAGCAATTCTACTTCATCCTTCTTCGCCACGTCTAATTATT-CT 497
Query 1360 CTCGCACAGTCTATGCTACCTTCTTGTCAGATCGTGAAGAGATTACATGTTCCCTCTAAT 1419
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 498 CTTGCACAGTCTATGCTTCCTTCTTGTCAAATCGTGAAGAGATTACATGTTCCGGCTACT 557
Query 1420 TCGCCGTTTGGAGAAACAAGATTCTCGAGCT-ACCTCAACAATCAAAACCTCCTGTTGGA 1478
||||| ||||| ||||||||||||||||| | ||||||||||||||| ||||||| ||||
Sbjct 558 TCGCCATTTGGGGAAACAAGATTCTCGAG-TGACCTCAACAATCAAAGCCTCCTGCTGGA 616
Query 1479 GTGGGACTCGCCTGATTGCAGAG 1501
||||| || ||||||||||||||
Sbjct 617 GTGGGCCTTGCCTGATTGCAGAG 639
Score = 577 bits (312), Expect = 2e-163
Identities = 379/411 (92%), Gaps = 5/411 (1%)
Strand=Plus/Plus
Query 1571 CTAAAAAATCCGGTCATTTAAGTAGTGGAGTACTGGTACTAGTTATAAGCTTGTCAGCAG 1630
|||||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 CTAAAAAAACTGGTAATTTAAGTAGTGGAGTACTAGTACTAGTTATAAGCTTGTCAGCAG 717
Query 1631 TCACCGTCTTTGTCTTTCCTACTTGTATCGCTATCCGCCTTTACAACTCCGAAAGCTTCG 1690
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 718 TCACCGTCTTTGTCTTTCCTACTTGTATCGCTATCCGCCTTTACGACTCCGAAAGATTCG 777
Query 1691 ATTCCCTAGCTATCGCAGCCGCGACCGTGATGCAGCAGCCAAGAGAGGTTATGACCACGA 1750
|||| ||||||||||||||| ||||| ||||||||||| |||||||||||| ||| ||
Sbjct 778 ATTC---AGCTATCGCAGCCGCAACCGTAATGCAGCAGCCGAGAGAGGTTATGGCCAGGA 834
Query 1751 GGGGTCTCGACCAATCTACGATCGAAACATTCAAGAAAATGGAGTTGGGAGAAAGTAGGA 1810
||||||| ||||||||||| || ||||| |||||||||||||||||||||||||| || |
Sbjct 835 GGGGTCTTGACCAATCTACAATAGAAACGTTCAAGAAAATGGAGTTGGGAGAAAGCAGAA 894
Query 1811 GGATTTCCGGG-ACTAATGGTATTGTATGTCCGATTTGTTTATCAGAGTATGCGAGCAAA 1869
|| |||| ||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 895 GGCTTTC-GGGTACTAATGGTATTGTGTGTCCCATTTGTTTATCAGAGTATGCGAGCAAA 953
Query 1870 GAGACCGTACGGTTCATACCGGAATGTGACCATTGCTTTCACGTGAAATGTATTGATGTA 1929
||||||||||| |||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 954 GAGACCGTACGTTTCATACCGGAATGTGACCATTGCTTCCATGTGGAATGTATTGATGTG 1013
Query 1930 TGGCTCAAGATTCATGGTTCGTGTCCTCTTTGTCGGAACTCACGTGCGTGA 1980
|||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1014 TGGCTCAAGATTCATGGTTCATGTCCTCTTTGTCGGAACTCATGTGCGTGA 1064
> AT1G28040.1 | Symbols: | RING/U-box superfamily protein | chr1:9773580-9775481
REVERSE LENGTH=1471
Length=1471
Score = 351 bits (190), Expect = 1e-95
Identities = 330/396 (83%), Gaps = 15/396 (4%)
Strand=Plus/Plus
Query 1011 ATGTGGACC-CTTAGATGTCCCCATTCGTTTTCCTTTCTGTGACCATGCACAATTCAACC 1069
||||| ||| ||| || |||||||||||||||||||||| | | || || |||||| |
Sbjct 472 ATGTGAACCACTTGGA-ATCCCCATTCGTTTTCCTTTCTGCGGCAATCCAGGATTCAATC 530
Query 1070 TCCACTGTACCGATCTCAATAAGACAGTCCTAGAACTTCCTATGTCCGGAACATTTCTTG 1129
||||||| | | | ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 531 TCCACTGCAACAACCTCGATAAGACAGTCCTAGAGCTTCCTATGTCCGGAACATTTCTTG 590
Query 1130 TCCATGATATCGACTAC-AGAAGGCAAAAGATTTATATCAACGACCCTGAAAACTGTTTG 1188
|| |||| ||| ||||| | ||| || |||||| ||||| |||||||||||||||| ||
Sbjct 591 TCGATGAAATCAACTACCAAAAG-CAGCAGATTTCTATCAGCGACCCTGAAAACTGTATG 649
Query 1189 GCTAAACGGCTTTTAACCTTCAATATTTCAGGATCTCCTTTCTCTCCTCGCTTCGAGAT- 1247
| |||| |||||||||||||||||| ||||||||||||||||||| | ||||| || |
Sbjct 650 GTTAAAAGGCTTTTAACCTTCAATACTTCAGGATCTCCTTTCTCTTATGGCTTC-AGTTT 708
Query 1248 CTTCTACACATTCTTGACTTGTCCTAATGAGGTCGTGTTGCCG-TCTTGGTATCCG-T-- 1303
|| |||||| |||||||| ||||| |||||||||||| | ||| | ||||| || | |
Sbjct 709 CTACTACACGTTCTTGACCTGTCCGAATGAGGTCGTGATACCGGT-TTGGTCTCTGATGT 767
Query 1304 CCATTCCTTGCCTAAGCAATTCCACCTCCTCCTTCTTCGCCACGTCTAATTTTG-CTCTC 1362
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| | || |
Sbjct 768 CCATCCCTTGCCTAAGCAATTCTACCTCCTCCTTCTTCGCCACGTCTAATTT-GACTTTT 826
Query 1363 GCACAGTCTAT-GCTACCTTCTTGTCAGATCGTGAA 1397
|| | | | | || |||||||||||||| |||||
Sbjct 827 TCAAAAT-TGTTGCCGCCTTCTTGTCAGATTGTGAA 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98091864930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5