BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483806
Length=2138
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46500.1 | Symbols: ATPI4K GAMMA 4, UBDK GAMMA 4, PI4K GAMMA... 3121 0.0
> AT2G46500.1 | Symbols: ATPI4K GAMMA 4, UBDK GAMMA 4, PI4K GAMMA
4 | phosphoinositide 4-kinase gamma 4 | chr2:19086561-19088964
REVERSE LENGTH=2311
Length=2311
Score = 3121 bits (1690), Expect = 0.0
Identities = 1860/1942 (96%), Gaps = 11/1942 (1%)
Strand=Plus/Plus
Query 200 ATCGAATCCTGtttttttCCGTAA-CAATTTCTTAGATTTCTCCAAGAAGTGAAAAGAAA 258
|||||||||||||||||||||||| || ||||||||||||||| ||||| |||| ||
Sbjct 375 ATCGAATCCTGTTTTTTTCCGTAAGAAAGTTCTTAGATTTCTCC---AAGTG-AAAG-AA 429
Query 259 GGATGTCATCAGCTGGTGTTGCGTTAAGTCCGGTTCGTAGCGAGCCATTGATTATGCCTC 318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 -GATGTCATCAGCTGGTGTTGCGTTAAGTCCGGTTCGTAGCGAGCCATTGATTATGCCTC 488
Query 319 TGGTTCGTGCCAATTCTTGTGC-TGATTCTTACCCTGACGACACCATTATGATTTACCTT 377
|||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||
Sbjct 489 TGGTTCGTGCCAATTCTTGT-CTTGATTCTTATCCTGACGACACCATCATGATTTACCTT 547
Query 378 ACACTTCCCGGGA-CGGTGATCCCGATGCGTGTGCTTGAGTCTGATTCCATTGAGTCTGT 436
|||||| || ||| ||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 548 ACACTT-CCTGGATCGGTGATACCAATGCGAGTGCTTGAGTCTGATTCCATTGAGTCTGT 606
Query 437 TAAGCTTCGGATTCAGTCTTATCGCGGCTTTGTTGTGAGGAATCAGAAGCTTGTTTTCGG 496
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 607 TAAGCTTCGGATTCAGTCTTACCGCGGCTTTGTTGTGAGGAATCAGAAGCTTGTTTTCGG 666
Query 497 GGGACGAGAGCTAGCTAGAAGCAATTCTAATATGCGTGATTACGGTGTTAGTGAAGGCAA 556
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 667 TGGTCGAGAGCTAGCTAGAAGCAATTCTAATATGCGTGATTATGGTGTTAGTGAAGGCAA 726
Query 557 CATTCTTCACTTGGTTCTTAAGCTCTCTGATCTTCAGGTTCTTGATGTTAAGACTACCTG 616
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CATTCTCCACTTGGTTCTTAAGCTCTCTGATCTTCAGGTTCTTGATGTTAAGACTACCTG 786
Query 617 TGGGAAACACTGCAGGTTTCATGTCGAGAGAGGGAGGAACATTGGTTATGTGAAGAAGCA 676
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 787 TGGGAAACACTGCAGGTTTCATGTCGAGAGAGGGAGAAACATTGGGTATGTGAAGAAGCA 846
Query 677 GATTTCTAAAAAGCGTGGAGACTTTGTTGATCCTGATGAACAGGAAATTCTTTACGAAGG 736
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 847 GATTTCGAAAAAGCGTGGAGACTTTGTTGATCCTGATGAACAGGAGATTCTTTACGAAGG 906
Query 737 TGAGAAGTTGGAAGACCAGAGTCTTATTAATGACATCTGCAGAAACGACGACTCGGTTTT 796
|||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 907 TGAGAAGTTGGAAGACCAGAGTCTTATTAATGACATTTGTAGAAACGATGACTCGGTTTT 966
Query 797 GCATCTGCTTGTGCGGAGATCTGCTAAAGTTCGAGCTAAACCGGTGGAGAAGAACTTTGA 856
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 967 GCATCTGCTTGTGCGGAGATCTGCTAAAGTTCGAGTTAAGCCGGTGGAGAAGAACTTTGA 1026
Query 857 GTTGTCTATTGTTGCCCCACAAGCAAAAGATAAGAAGGGTCGTGAAGCTGACAGCATTGT 916
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1027 GTTGTCTATTGTTGCCCCACAAGCAAAAGATAAGAAGGGTCGTGAAGCTAAGAGCATTGT 1086
Query 917 GCCACCAAAAAAGCTCTCTTTGGAGCCGGTAATTGTTAACTCCAAGGCTAAAGTACCTCT 976
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1087 GCCACCAAAAAAGCTTTCTTTGGAGCCGGTAGTTGTTAACTCCAAGGCTAAAGTACCTCT 1146
Query 977 GGTGGTTAAAGATATGATTAAGTCTGCTTCTGATGGACTAAAAAGTGGGAATTCTCCGGT 1036
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1147 GGTGGTTAAAGATATGATTCAGTCTGCTTCTGATGGACTTAAAAGTGGGAATTCTCCGGT 1206
Query 1037 CAGGTCAAGAGAAGGCACGGGAGGAGCTTATTTCATGCAGGGTCCATCAGGCAACAAATT 1096
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1207 CAGGTCAAGCGAAGGTACGGGAGGAGCTTATTTCATGCAGGGTCCATCTGGCAACAAATT 1266
Query 1097 TGTTGGTGTGTTTAAGCCAATAGATGAGGAACCAATGGCTGAAAACAATCCACAGGGTTT 1156
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1267 TGTGGGTGTGTTTAAGCCAATAGATGAGGAACCAATGGCTGAGAACAATCCTCAGGGTTT 1326
Query 1157 ACCACTTTCGCCAAACGGTGAAGGTTTGAAGAAAGGAACAAAGGTTGGAGAAGGTGCATT 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 ACCACTTTCGCCAAACGGTGAAGGTTTGAAGAAAGGAACAAAGGTTGGAGAAGGTGCATT 1386
Query 1217 AAGGGAAGTCGCTGCTTACATTTTGGATCATCCCAAAAGTGGAAACCGATCTACGTCCGC 1276
||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |
Sbjct 1387 AAGGGAAGTCGCTGCATACATTTTGGATCATCCCAAAAGTGGAAACAAATCTATGTTTGG 1446
Query 1277 TGAAGAGATAGGTTTTGCTGGTGTACCTCCCACAGCTATGATTGAATGTCTGCATCCGGG 1336
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1447 TGAAGAGATAGGTTTTGCTGGTGTACCTCCCACAGCTATGATTGAATGTTTGCATCCAGG 1506
Query 1337 GTTTAACCATCCCAAAGGAATCAAAACCAAGATCGGGTCACTTCAGATGTTTACCGAGAA 1396
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1507 GTTTAACCATCCCAAAGGAATCAAAACCAAGATTGGATCACTTCAGATGTTTACTGAGAA 1566
Query 1397 CGATGGCAGCTGTGAAGATATGGGTCCACTTTCATTTCCAGTTGAAGAAGTTCATAAGAT 1456
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1567 CGATGGCAGCTGTGAAGATATGGGTCCACTTTCATTTCCAGTAGAAGAAGTTCATAAGAT 1626
Query 1457 TTCTGTGCTGGATATTAGACTGGCCAATGCAGACAGACATGGTGGGAACATTTTGATGAC 1516
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1627 TTCTGTGTTGGATATTAGACTGGCCAACGCAGACAGACATGGTGGGAACATTTTGATGAC 1686
Query 1517 CAAGGACGAAAACGGAAAGCTTGTTTTGGTTCCTATAGACCATGGATACTGCTTGCCTGA 1576
||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1687 CAAGGACGAAAGCGGGAAGCTCGTTTTGGTTCCTATAGACCATGGATACTGCTTGCCTGA 1746
Query 1577 AAGCTTTGAAGATTGCACGTTTGAGTGGCTATATTGGCCACAAGCCCGGAAACCGTACTC 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1747 AAGCTTTGAAGATTGCACGTTTGAGTGGCTATATTGGCCACAAGCCCGGAAACCGTACTC 1806
Query 1637 TGCAGAGACTCGAGACTACATAAGATCACTGGATGCAGAGGAAGATATCGATCTACTGAA 1696
||||||||| | ||| ||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1807 TGCAGAGACCCAAGAGTACATAAGATCACTGGACGCAGAGGAAGATATTGATCTACTAAA 1866
Query 1697 GTTCCATGGATGGAAAATGCCGGCAGAGACGGCTCGGACGCTCAGAATCTCAACGATGCT 1756
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1867 GTTTCATGGATGGAAAATGCCGGCAGAGACGGCTCAAACGCTCAGAATCTCAACGATGCT 1926
Query 1757 ACTGAAGAAAGGAGTGGAAAGAGGACTAACAGCATTTGAGATTGGAACCGTAATGTGCAG 1816
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1927 ACTGAAGAAAGGAGTGGAAAGAGGACTAACAGCATTTGAGATTGGAACCATAATGTGCAG 1986
Query 1817 AGAAACACTTAGCAAGAAGTCTCTAGTGGAGGAAATGGTAGAGGAAGCTCAAGAAGCAGT 1876
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1987 AGAAACACTTAGCAAGAAGTCTCTGGTGGAGGAAATGGTAGAGGAAGCTCAAGAAGCTGT 2046
Query 1877 GCTTCCAGGGACGAGCGAAGCTGCATTCCTCGAAGCTCTATCCGATGTGATGGACTACCA 1936
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2047 GCTTCCAGGGACGAGCGAAGCTGCATTCCTCGAAGCCCTATCCGATGTGATGGATTACCA 2106
Query 1937 TCTCGATCACTCTCAGGAACACTAAAACTGGTTCTTGTTTAACTCAAAACTCTGGTATAT 1996
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 2107 TCTCGATCACTCTCAGGAACACTAAAAATGGTTCTTGTTTAATTCAAAACTCTGGTATAT 2166
Query 1997 ACTctttggtttgctttttataaacctgttggcttttgtattttttaaactctttctttt 2056
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct 2167 ACTCTTTGGTTTGCTTTTTATAAACCTGTTGGCTTTTGTATTTTTAAAACTTTTTCATTT 2226
Query 2057 ctgtcattctttgGACATGTTCAAGGTGTTTTGTTAACTTCACTCAGACATATTTCATGG 2116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2227 CTGTCATTCTTTGGACATGTTCAAGGTGTTTTGTTAACTTCACTCAGACATATTTCATGG 2286
Query 2117 TAATGACAATTTAAGTGTTTAC 2138
||||||||||||||||||||||
Sbjct 2287 TAATGACAATTTAAGTGTTTAC 2308
Score = 159 bits (86), Expect = 8e-38
Identities = 109/119 (92%), Gaps = 5/119 (4%)
Strand=Plus/Plus
Query 4 AGCTCTTTCGTACGCCATTGGATTTAACCCTAAAAACTCTCTATTATTGGATTGG---AT 60
|||| ||| |||||||||| |||| ||||||||||| ||||||||||||||||| ||
Sbjct 1 AGCTGTTTTGTACGCCATTAGATTGAACCCTAAAAA--CTCTATTATTGGATTGGATCAT 58
Query 61 CATCGATAAAGCTCCACGCCTTGTCCCAATTTCCTCTTTGGTTCTTTCCTTCTGGTAAG 119
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CATCGTTAAAGCTCCACGCCTTGTCCCAATTTCCTCTTTGGTTCTTTCCTTCTGGTAAG 117
Score = 97.1 bits (52), Expect = 6e-19
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 121 TTGTTCTTGTTGTTTCTGGAAGAAGAAGAAGAAGCGAT-GAATTTGGGATTTTAGGGATT 179
||||| ||||||||||| ||| |||||||||||||||| | | |||||||||||||||||
Sbjct 258 TTGTTATTGTTGTTTCTCGAAAAAGAAGAAGAAGCGATGGTA-TTGGGATTTTAGGGATT 316
Query 180 ATTGCGGTTTG 190
|||||||||||
Sbjct 317 ATTGCGGTTTG 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106023551040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5