BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483808
Length=2153
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type tra... 3033 0.0
> AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type transcription
factor | chr2:19090953-19093315 REVERSE LENGTH=2363
Length=2363
Score = 3033 bits (1642), Expect = 0.0
Identities = 1875/1985 (94%), Gaps = 26/1985 (1%)
Strand=Plus/Plus
Query 184 CTGGAGAGACTCGAGTTTATATGGTTTCAAGCATCATTGAGTCAATCACTGAGTTGTGTG 243
||||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||
Sbjct 289 CTGGAGAGACTCGAGTTTATATGGTTTCAAGCATCGTTGAGTCAATCATTGAG-T-TGTG 346
Query 244 TAGAAGAAAGGTTTGGTTTTCTCCGTAGC-TTT-TCTGGTTTTGGGTTTGGTAGGATTCT 301
|||||||||||||||||||||| | | | ||| |||||||||||||||||||||| |
Sbjct 347 TAGAAGAAAGGTTTGGTTTTCTTC-T-CCGTTTAAGTGGTTTTGGGTTTGGTAGGATT-T 403
Query 302 -GTGTAATCTTGGAGATAAAGAAAGATGAATATTAGTGATTTGGGTTGGGATGATGAAGA 360
||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 404 GGTGTAATCTGGGAGATAAAGAAAGATGAATATGAGTGATTTAGGTTGGGATGATGAAGA 463
Query 361 GAAATCGGTGGTTAGTGCTGTTTTAGGGCATTTAGCTTCTGATTTTCTTCGAGCAAACTC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TAAATCGGTGGTTAGTGCTGTTTTAGGGCATTTAGCTTCTGATTTTCTTCGAGCAAACTC 523
Query 421 TAATTCGAATCAGAATCTGTTTCTTGTTATGGGAACTGATGATAGTCTGAATAAGAAGCT 480
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 524 TAATTCGAATCAGAATCTCTTTCTTGTTATGGGAACTGATGATACTCTGAATAAGAAGCT 583
Query 481 CTCTAGTCTCGTAGATTGGCCAAACTCGGAGAATTTCAGCTGGAACTACGCTATTTTCTG 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 CTCTAGTCTCGTTGATTGGCCAAACTCGGAGAATTTCAGCTGGAACTACGCTATTTTCTG 643
Query 541 GCAACAAACCATGTCTAGATCCGGACAACAAGTCTTAGGTTGGGGAGATGGGTGTTGTCG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GCAACAAACCATGTCTAGATCCGGACAACAAGTCTTAGGTTGGGGAGATGGGTGTTGTCG 703
Query 601 AGAGCCTAATGAGGAAGAGGAATCAAAAGTTGTTAGGTCTTATAATTTTAGCAACATGGG 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 704 AGAGCCTAATGAGGAAGAGGAATCAAAAGTTGTTAGGTCTTATAATTTTAACAACATGGG 763
Query 661 AGTAGAGGAAGAGACATGGCAAGATATGAGGAAGAGAGTTTTGCAGAAGCTTCATAGGTT 720
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 764 GGCAGAGGAAGAGACATGGCAAGATATGAGGAAGAGAGTGTTGCAGAAGCTTCATAGGTT 823
Query 721 GTTTGGTGGATCTGATGAAGACAATTATGCTTTGAGTTTAGAGAAAGTTACCGCTACTGA 780
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 824 GTTTGGTGGATCTGATGAAGACAATTATGCTTTGAGCTTAGAGAAAGTTACTGCTACTGA 883
Query 781 GATTTTCTTCTTAGCTTCCATGTATTTCTTCTTCAATCACGGTGAAGGAGGTCCGGGGAG 840
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 884 GATTTTCTTCTTAGCTTCCATGTATTTCTTCTTCAATCACGGTGAAGGCGGTCCTGGGAG 943
Query 841 GTGTTATGCTTCAGGGAAACATGTGTGGCTCTCTGATGCGGTTAACTCGGAGTCTGACTA 900
||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 944 GTGTTATTCTTCAGGGAAACATGTGTGGCTCTCTGATGCAGTTAACTCTGAGTCTGACTA 1003
Query 901 TTGTTTCAGGTCTTTTATGGCGAAATCTGCGGGAATCAGAACGATCGTTATGGTTCCTAC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TTGTTTCAGGTCTTTTATGGCGAAATCTGCGGGAATCAGAACGATCGTTATGGTTCCTAC 1063
Query 961 TGATGCTGGTGTTCTTGAGCTTGGTTCTGTTTGGTCTTTGCCTGAAAACATTGGCTTGGT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 TGATGCTGGTGTTCTTGAGCTTGGTTCTGTTTGGTCTTTGCCTGAAAACATTGGCTTGGT 1123
Query 1021 TAAGTCTGTTCAAGCTTTGTTCATGAGGAGAGTTACGCAACCATTAATGGTGACTTCAAA 1080
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1124 TAAGTCTGTTCAAGCTTTGTTCATGAGGAGAGTTACGCAACCAGTAATGGTGACTTCAAA 1183
Query 1081 CGCTAACATGAGTGGAGGGATTCACAAGCTTTTCGGGCAGGATTTGAGTGGAGCTCACGC 1140
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 CACTAACATGACTGGAGGGATTCACAAGCTTTTCGGGCAGGATTTGAGTGGAGCTCACGC 1243
Query 1141 GTATCCTAAGAAGCTCGAAGTGAGAAGAAATTTAGATGAGAGATTCACTCCTCAAAGTTG 1200
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1244 GTATCCTAAGAAGCTCGAAGTGAGAAGAAACTTGGATGAGAGATTCACTCCTCAAAGTTG 1303
Query 1201 GGAAGGCTATATTCATAATAAAGGTCCAACATTTGGTTACACACCTCAAAGAGAAGATGT 1260
||||||||||| | | |||||||||||||||||||||||||||||||| || || |||||
Sbjct 1304 GGAAGGCTATAATAACAATAAAGGTCCAACATTTGGTTACACACCTCAGAGGGATGATGT 1363
Query 1261 GAAAGTGCAAGAGAATGTGAATGTCGTTGTAGATGATAACAATTACAAGACGCAGATTGA 1320
|||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 1364 GAAAGTGCTAGAGAATGTGAATATGGTTGTAGATAATAACAATTACAAGACGCAGATTGA 1423
Query 1321 GTTTGCTGGATCATCAGTTCCTGCTTCTTCGAATCCATCTACAAATACTCAACTAGAAAA 1380
|||||| |||||||||||| ||||||||||||||||||||||||| ||||| | ||||||
Sbjct 1424 GTTTGCGGGATCATCAGTTGCTGCTTCTTCGAATCCATCTACAAACACTCAGCAAGAAAA 1483
Query 1381 ATCAGAGTCTTGTACAGAGAAAAGACCAGTGAGCTTATTAGCAGGAGCAGGAACAGTTTC 1440
|||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1484 ATCAGAATCTTGTACAGAGAAAAGACCAGTGAGCTTGTTAGCAGGAGCAGGAATAGTTTC 1543
Query 1441 TGTTGTTGATGAGAAGAGACCGAGAAAGCGAGGTAGAAAACCTGCAAACGGAAGAGAAGA 1500
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 1544 TGTTGTTGATGAGAAGAGACCGAGAAAGAGAGGGAGAAAGCCTGCAAACGGAAGAGAAGA 1603
Query 1501 GCCATTGAACCATGTGGAAGCTGAGAGGCAGAGACGCGAGAAGCTTAACCAAAGATTCTA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 GCCATTGAACCATGTGGAAGCTGAGAGGCAGAGACGCGAGAAGCTTAACCAAAGATTCTA 1663
Query 1561 CGCTTTACGGTCAGTTGTTCCAAACATTTCGAAAATGGACAAAGCTTCTTTACTTGGAGA 1620
||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 1664 CGCTTTACGATCAGTTGTTCCAAACATTTCTAAAATGGACAAGGCTTCTCTACTTGGAGA 1723
Query 1621 CGCAATTTCTTACATCAAAGAGCTTCAAGAGAAAGTCAAGATCATGGAAGATGAAAGAG- 1679
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1724 CGCAATTTCTTACATCAAAGAGCTTCAAGAGAAAGTCAAGATAATGGAAGATGAAAGAGT 1783
Query 1680 -----CAGATAACAGCTTATCGGAATCAAACACAAGAACCGTAGAA-A--GTACAGAAGT 1731
||||||| |||||||| ||||||||||||| ||| |||||| | || |||||||
Sbjct 1784 AGGAACAGATAAGAGCTTATCAGAATCAAACACAATAACAGTAGAAGAAAGTCCAGAAGT 1843
Query 1732 TGACATTCAAGCTATGAATGAAGAGGTTGTTGTAAGAGTAGTCTCACCTTTAGATTCACA 1791
|||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||
Sbjct 1844 TGACATTCAAGCTATGAATGAAGAGGTTGTTGTAAGAGTAATCTCGCCTTTGGATTCACA 1903
Query 1792 TCCAGCTTCAAGAATCATACAAGCAATGAGAAACTCAAACGTTAGTCTAATGGAGGCTAA 1851
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1904 TCCAGCTTCAAGAATCATACAAGCAATGAGAAACTCAAATGTTAGTCTAATGGAGGCTAA 1963
Query 1852 GTTATCGTTAGCTGAAGACACAATGTTTCACACTTTTGTGGTAAAGTCTAACAACGGGTC 1911
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1964 GTTATCATTAGCTGAAGACACAATGTTTCACACTTTTGTGATAAAGTCTAACAACGGGTC 2023
Query 1912 AGATCCATTGACGAAAGAGAAGCTTATAGCAGCGGTTTACCCGGAGACCAGCTCGACGCA 1971
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 2024 GGATCCATTGACGAAAGAGAAGCTTATAGCAGCGTTTTACCCCGAGACCAGCTCGACGCA 2083
Query 1972 GCAGCCATTACCGTCTTCTAGCTCACAGGTTTTTGGTGATATCTAGGTTTCACCTGATGG 2031
| |||||| || |||||||| |||||||| | ||||||||| || ||||||| ||||||
Sbjct 2084 ACCGCCATTGCCTTCTTCTAGTTCACAGGTCTCTGGTGATATATAAGTTTCACATGATGG 2143
Query 2032 TGAAGCTTT---CTATTCTTGTTTTAGTATAGATAACTTTCAGGGTTCAACTAGAAATAG 2088
||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 2144 TGAAGCTTTTGTCTATTCTTGTTTCAGTATAGATAACTTTCAGG-TTCAACTAGAAATAG 2202
Query 2089 ATAAAATTAATCCtttttttCTTTTCTCTTTCTTAGAGTGAAAGGAATCCAGTTTTCGTA 2148
||||||| |||||||| ||||||||||||||| |||||||||||||| |||| |||
Sbjct 2203 ATAAAAT----CCTTTTTT-CTTTTCTCTTTCTTATAGTGAAAGGAATCCGGTTTAAGTA 2257
Query 2149 TATTC 2153
|||||
Sbjct 2258 TATTC 2262
Score = 248 bits (134), Expect = 2e-64
Identities = 170/187 (91%), Gaps = 3/187 (2%)
Strand=Plus/Plus
Query 1 GACTTTTCTAGTTGCAAAGCTCATTCAAATGTTCAATTTCT-TGTAAAAATCAAAGCTTT 59
||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||
Sbjct 72 GACTTTTCTAGTTGCAACTCTCATTCAATTGTTCAATTTCTCTGTAAAAATCAAAGCTTT 131
Query 60 CTGGAATCTTTCTCCGGTGAGTGT-TTTCTTAACCGGCGGTGGCTTCTCTTGAGCGTGAC 118
|||||||||||| ||| ||| | |||||| ||||||| |||||||||||||||||
Sbjct 132 TTGGAATCTTTCTTCGGCGAG-ATATTTCTTCACCGGCGCAAGCTTCTCTTGAGCGTGAT 190
Query 119 TCATCACTGGGTTTGCAtttttttCTGGTGGGTATTCTTCAAATTGTTCAAAGTTCCGAC 178
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 191 TCATCACTGGGTTTGCATTTTTTCCTGGTGGGTATTCTTCAAATTGTTCAAAGCTCCGAC 250
Query 179 CTTTTCT 185
|||||||
Sbjct 251 CTTTTCT 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106776559215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5