BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483813

Length=770
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46535.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...  1149    0.0  


> AT2G46535.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); 
BEST Arabidopsis thaliana protein match is: Protein of 
unknown function (DUF688) (TAIR:AT3G61840.1); Has 48 Blast 
hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:19109620-19110497 FORWARD 
LENGTH=783
Length=783

 Score = 1149 bits (622),  Expect = 0.0
 Identities = 737/788 (94%), Gaps = 25/788 (3%)
 Strand=Plus/Plus

Query  1    ACTCTTCCACTACCTaaaaagaaacagcctaagactaagct---gaagaag-aagcaag-  55
            ||||| ||||||||||||||||||| |||||||||||||||   ||||||| ||| ||| 
Sbjct  1    ACTCTCCCACTACCTAAAAAGAAACTGCCTAAGACTAAGCTGAAGAAGAAGAAAGAAAGA  60

Query  56   -a-a-ag-a-a-a-aaaaatgagagaagaaaaggaagaagagaagGCGAAGCTTGCACTT  108
             | | || | | | ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct  61   AACAGAGAAGACATAAAAATGAGAGGAGACAAGGAAGAAGAGAAGGCGAAGCTTGCACTT  120

Query  109  GTGTTAGCTGCAAAGTCAAGATCATTGTTGTACACTTCATCGCCTGCGAGTCCACGTGTG  168
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  121  GTGTTAGCTGCAAAGTCAAGATCGTTGTTGTACACTTCATCGCCTGCGAGTCCACGTGTG  180

Query  169  TTTGCTTCTCCGATTCACACTCTTGCCTCTGTTCCGTTTTGTTGGGAAGACCAACCAGGC  228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTTGCTTCTCCGATTCACACTCTTGCCTCTGTTCCGTTTTGTTGGGAAGACCAACCAGGC  240

Query  229  AAGCCCAAGAACCCTCTTCGTCCTCTTTCTTACCCCAAGTGTCTTGATTTGCCACCTCGT  288
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AAGCCCAAGCACCCTCTTCGTCCTCTTTCTTACCCCAAGTGTCTTGATTTGCCACCTCGT  300

Query  289  TTGCTCCTTCCTGGTGAGTTTACGCAAATGCCCTTGCCCGAGAGGAAGCATGGGCTCTTG  348
            |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  301  TTGCTCCTTCCTGGTGAGTTCACGCAAATGCCCTTGCCCGAGAGGAAACATGGGCTCTTG  360

Query  349  CGGTTCTTGAGGAGGAAAGGGAGAGGGGATGTTGTTGTCAGGGGTAATTATGTCTTTCTG  408
             ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  361  AGGTTCTTGAGGAGGAAAGGGAGAGGGGATGTTGTTGTGAGGGGTAATTATGTCTTTCTG  420

Query  409  TCGGACAATCAGAGAGCAGGAGAGA-T--CAACGAGAACAACATGAAGATCATGAAGTTT  465
            ||||| ||||||||||||||||| | |  |||||||||||||||||||||||||||||||
Sbjct  421  TCGGAGAATCAGAGAGCAGGAGATAATATCAACGAGAACAACATGAAGATCATGAAGTTT  480

Query  466  AACAGATCAGGGAGTTTCCATGGTGGTGGTTCAGTTAAAGGATCTCACTTTTGGGGAAGT  525
            |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct  481  AACAGATCAGGGAGTTACCATGGTGGTGGTTCTGTTAAAGGATCTCACTTTTGGGGAAGT  540

Query  526  TTGTGCAAGGGATTGAAGCTAGCAATGCCATGGAAGAACAAGAAGCTAAGAAGTGAAAGT  585
            || |||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct  541  TTATGCAAGGGATTGAAGCTAGCAATGCCATGGAAGAACAAGAAGATGAGAAGTGGAAGT  600

Query  586  GTTTAAGCCTGTTTACAATATGCATTATCTATCTTATCTATTGAGGGATGAAGATGATGT  645
            |||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| 
Sbjct  601  GTTTAAGCCTGTTTTCAATATGCATTATCTATCT-ATCTATTGAGGGATCAAGATGATGA  659

Query  646  AAAAGAGCTATTAAGAGTGTACGTAAGATTAGCAATTTTATTGTAATGTGAAACTAATAT  705
            ||||||||||||||||||||| |||||||||||||||||| |||||| |     ||||||
Sbjct  660  AAAAGAGCTATTAAGAGTGTATGTAAGATTAGCAATTTTACTGTAAT-T-----TAATAT  713

Query  706  CTGTGTGATATGCATGTATAATGTT---AAGACTCATGAGCCATGGCAAGAAAAGTTCCA  762
            ||||||||||||||| |||||||||   ||||||||||||||||||||||||||||| ||
Sbjct  714  CTGTGTGATATGCATATATAATGTTGTTAAGACTCATGAGCCATGGCAAGAAAAGTTTCA  773

Query  763  AGCTTTTT  770
            ||||||||
Sbjct  774  AGCTTTTT  781



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37424439515


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5