BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483814 Length=472 Score E Sequences producing significant alignments: (Bits) Value AT2G46540.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 664 0.0 > AT2G46540.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19110472-19111769 REVERSE LENGTH=501 Length=501 Score = 664 bits (359), Expect = 0.0 Identities = 438/475 (92%), Gaps = 10/475 (2%) Strand=Plus/Plus Query 1 GACGACGAGCTTCGGTCTTTAAATCCGAGGAAGAGACTAGAATCGGATAGTTGCGAAAAA 60 ||||| |||||| |||| | ||||||||||||||| || ||||||| || |||| |||| Sbjct 34 GACGAGGAGCTTTGGTC-GT-AATCCGAGGAAGAGATTAAAATCGGAAAG-TGCG-AAAA 89 Query 61 TGCCGATCATGGAGAAATTGAGGATGTTCGTGGCGCAGGAACCAGTTGTTGCTGCTTCTT 120 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 90 TGCCGGTCATGGAGAAATTGAGGATGTTCGTGGCGCAGGAACCAGTTGTGGCTGCTTCTT 149 Query 121 GCTTAATTGGCGGTGTTGGACTATTTTTGCCTGCTGTTGTGAGGCCTATTTTAGACTCAC 180 ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| | Sbjct 150 GCTTAATCGGCGGTGTTGGACTATTTTTGCCTGCGGTTGTGAGGCCTATTCTAGACTCTC 209 Query 181 TCGAGGCATCCAAACAAGTTAAAGCTCCCCCACTTACCGATGTAATTGCTGGTGTCACTG 240 ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| | Sbjct 210 TCGAGGCTTCCAAACAAGTTAAAGCTCCTCCACTTACCGATGTGATTGCTGGTGTCACAG 269 Query 241 GGAAGAAACAGAGTTAAACCAAACAATGACTTCCCCTGTTTTCTTACATTCAGATGATTA 300 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 270 GGAAGAAACAGAGTTAAAACAAGCAATGACTTCCCCTGTTTTCTTACATTCAGATGATCC 329 Query 301 CTATTCCCTTTT-GTCTTTTACTCTCTCTCTATTCACAATGAATAAGCCAGACTCATGTT 359 ||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| || Sbjct 330 CTATTCCTTTTTTGTCTTTTACTCTCTCT--ATTCACAATGAATAAGCCAGACTCAT-TT 386 Query 360 -TTTGTTCTGAAACTTAATATAAAGGCATGTGTGTACACTCACTCTTGTTCATCACTTTA 418 |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 387 GTTTGTTATGAAACTTAATATAAAGGCATGTGTGTACACTCACTTTTGTTCATCACTTGA 446 Query 419 TCAGATGTATTCATTTCTTAATGACAAATGAAAAA-GCTTGGAACTTTTCTTGCC 472 ||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| Sbjct 447 TCAGATGTATTCATTTCTTAACAACAAATGAAAAAAGCTTGAAACTTTTCTTGCC 501 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22454663709 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5