BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483814

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46540.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   664    0.0  


> AT2G46540.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant 
structures; EXPRESSED DURING: 16 growth stages; Has 42 
Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr2:19110472-19111769 
REVERSE LENGTH=501
Length=501

 Score =  664 bits (359),  Expect = 0.0
 Identities = 438/475 (92%), Gaps = 10/475 (2%)
 Strand=Plus/Plus

Query  1    GACGACGAGCTTCGGTCTTTAAATCCGAGGAAGAGACTAGAATCGGATAGTTGCGAAAAA  60
            ||||| |||||| ||||  | ||||||||||||||| || ||||||| || |||| ||||
Sbjct  34   GACGAGGAGCTTTGGTC-GT-AATCCGAGGAAGAGATTAAAATCGGAAAG-TGCG-AAAA  89

Query  61   TGCCGATCATGGAGAAATTGAGGATGTTCGTGGCGCAGGAACCAGTTGTTGCTGCTTCTT  120
            ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  90   TGCCGGTCATGGAGAAATTGAGGATGTTCGTGGCGCAGGAACCAGTTGTGGCTGCTTCTT  149

Query  121  GCTTAATTGGCGGTGTTGGACTATTTTTGCCTGCTGTTGTGAGGCCTATTTTAGACTCAC  180
            ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct  150  GCTTAATCGGCGGTGTTGGACTATTTTTGCCTGCGGTTGTGAGGCCTATTCTAGACTCTC  209

Query  181  TCGAGGCATCCAAACAAGTTAAAGCTCCCCCACTTACCGATGTAATTGCTGGTGTCACTG  240
            ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct  210  TCGAGGCTTCCAAACAAGTTAAAGCTCCTCCACTTACCGATGTGATTGCTGGTGTCACAG  269

Query  241  GGAAGAAACAGAGTTAAACCAAACAATGACTTCCCCTGTTTTCTTACATTCAGATGATTA  300
            |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||  
Sbjct  270  GGAAGAAACAGAGTTAAAACAAGCAATGACTTCCCCTGTTTTCTTACATTCAGATGATCC  329

Query  301  CTATTCCCTTTT-GTCTTTTACTCTCTCTCTATTCACAATGAATAAGCCAGACTCATGTT  359
            ||||||| |||| ||||||||||||||||  |||||||||||||||||||||||||| ||
Sbjct  330  CTATTCCTTTTTTGTCTTTTACTCTCTCT--ATTCACAATGAATAAGCCAGACTCAT-TT  386

Query  360  -TTTGTTCTGAAACTTAATATAAAGGCATGTGTGTACACTCACTCTTGTTCATCACTTTA  418
             |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct  387  GTTTGTTATGAAACTTAATATAAAGGCATGTGTGTACACTCACTTTTGTTCATCACTTGA  446

Query  419  TCAGATGTATTCATTTCTTAATGACAAATGAAAAA-GCTTGGAACTTTTCTTGCC  472
            |||||||||||||||||||||  |||||||||||| ||||| |||||||||||||
Sbjct  447  TCAGATGTATTCATTTCTTAACAACAAATGAAAAAAGCTTGAAACTTTTCTTGCC  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22454663709


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5