BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483819
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46580.1 | Symbols: | Pyridoxamine 5'-phosphate oxidase fam... 1105 0.0
> AT2G46580.1 | Symbols: | Pyridoxamine 5'-phosphate oxidase family
protein | chr2:19129241-19130595 REVERSE LENGTH=847
Length=847
Score = 1105 bits (598), Expect = 0.0
Identities = 709/761 (93%), Gaps = 13/761 (2%)
Strand=Plus/Plus
Query 1 GATGGGAACAAATGTAGCGCCATGGAAGCAGCTTCTCTTTGGCGCCATTGAAGCCAATTC 60
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 82 GATGGGAACACATGTAGCACCATGGAAGCAGCTTCTCTTTGGCGCCATTGAAGCCAATTC 141
Query 61 TCATCTAAGCCACTCTTCTTACT-TTCAGCTCGCAACGATTGGTTTCAATGGACGGCCTT 119
||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct 142 TCATCTAAGCCACTCTTCTTA-TGTTCAGCTCGCAACGATTGGTTTAAATGGACGGCCTT 200
Query 120 CGAATCGCACCGTCGTATTCAGGGGATTTGAAGAGAACAGTGACAGGATTCAAATCAACA 179
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CGAATCGTACCGTCGTATTCAGGGGATTTGAAGAGAACAGTGACAGGATTCAAATCAACA 260
Query 180 CCGATCTTCGTAGTCGTAAGATAGAAGAGCTTAAGCATTGTCCGTTTTCTGAGATATGTT 239
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 261 CCGATCTTCGCAGTCGTAAGATTGAAGAGCTTAAGCATTGTCCTTTTTCTGAGATGTGTT 320
Query 240 GGTATTTCTCGGATACATGGGAGCAATTCCGGATCAATGGAAGAATTGAGGTCATTGATG 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GGTATTTCTCGGATACTTGGGAGCAATTCCGGATCAATGGAAGAATTGAGGTCATTGATG 380
Query 300 CGTCCAATCCTGACCAGACCAAGCTTCAGCAAAGAGAAAAAGCTTGGTTTGCTAATTCTT 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 381 CGTCCAATCCTGACCAGACCAAGCTTCAGCAAAGAGAGAAAGCTTGGTTTGCTAATTCTT 440
Query 360 TAAGGTCAAGGCTGATCTACACCTGTCCTACTCCCGGTAGTCCTTACAACATCGAACAAT 419
||||||||||||| |||||| ||||||||||||||||||||||| ||||| ||| ||||
Sbjct 441 TAAGGTCAAGGCTTATCTACGTCTGTCCTACTCCCGGTAGTCCTTGCAACAGCGAGCAAT 500
Query 420 CAAACCAACAACTTTATTTAGATCCCTCGAGTGGTCCAGTTCCTGAGTACTGCCTGCTGC 479
||| ||||||| || | |||||||| || ||||||||||||||||| |||||||||||||
Sbjct 501 CAAGCCAACAAGTTAAATTAGATCCTTCAAGTGGTCCAGTTCCTGAATACTGCCTGCTGC 560
Query 480 TTCTAGAGCCAGAAAAGGTTGATTACTTGAATCTGAAAAGTAATCAGAGGCATTTGTTTT 539
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 561 TTCTAGAGCCAGAAAAGGTTGATTACTTGAATCTGAAAACTAATCAGAGGCTTTTCTTTT 620
Query 540 CTTCGATGGCTAGTGGAGCTGGAGAGAAGTCCTGGACTTCAGAAAAGGTTAATCCATAAT 599
|||| ||||||| |||| |||||||||||| ||||||||||||||||||||| |||||||
Sbjct 621 CTTCCATGGCTACTGGAACTGGAGAGAAGTGCTGGACTTCAGAAAAGGTTAACCCATAAT 680
Query 600 TAA-CTTTTAATATCTGAGAGG-GTTATTAATTGTTTGTGGATTTCCCTTGTGTGATACA 657
||| |||||||| |||||||| | ||| ||| |||||||||||||||| |||| ||||
Sbjct 681 TAAACTTTTAATGTCTGAGAGAAGA-ATTTATTATTTGTGGATTTCCCTTATGTGGTACA 739
Query 658 --C--CACACTTTGTAGCAATTCATAATCCTTTTACTTTTACTCTTCACTTTCGAACATC 713
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TACATCACACTTTGTAGCAATTCATAATCCTTTTACTTTTACTCTTCACTTTCGAACATC 799
Query 714 GC---C-GCCATGTAATTAAAATATCTGAATAAAAGAATCT 750
|| | ||||| ||||||||||||||||||||||||||||
Sbjct 800 GCATTCCGCCATATAATTAAAATATCTGAATAAAAGAATCT 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5