BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483824
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46610.1 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/R... 1301 0.0
> AT2G46610.1 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr2:19136566-19138762 REVERSE
LENGTH=1100
Length=1100
Score = 1301 bits (704), Expect = 0.0
Identities = 859/932 (92%), Gaps = 18/932 (2%)
Strand=Plus/Plus
Query 1 TCATTATAAGATTTTGTGTTATTATTAAAACGAAGCTCCGTCTTCTTCGTCGAGCGTCGT 60
|||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||
Sbjct 13 TCATTATAAGATTTTGTG---TCATTAATACGAAGCTCCGTCTTCTTCGCCGAGCGTCGT 69
Query 61 TGTCGTATACTTTGCGTGTCTT-TGTTTAT-GT--T-G-AT-TACA-ATTTTGGTGATAG 112
||||| | | | | | || || | ||| | || | | | | || ||| | | | ||
Sbjct 70 CGTCGTCTTC-TAG-G-GT-TTATCTTTCTCGTCGTCGTCTCTTCAGATTCT--TCA-AG 122
Query 113 GAATTCGATTTCTTCTGGAAGAATGAGACCTGTGTTCGTTGGGAATTTCGACTATGATAC 172
|||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 123 GAATTCGATTGCTTTTGCAAGAATGAGACATGTGTACGTTGGGAATTTCGACTATGATAC 182
Query 173 TCGCCAATCGGATCTTGAAAGATTGTTCAGCAAGTACGGGAGGGTGGAGCGAGTTGACAT 232
|||||| |||||||||||||||||||||||||||| |||||| ||| |||||||||| ||
Sbjct 183 TCGCCATTCGGATCTTGAAAGATTGTTCAGCAAGTTCGGGAGAGTGAAGCGAGTTGATAT 242
Query 233 GAAGTCTGGGTATGCTTTTGTGTATTTTGAGGATGAGCGTGATGCTGAAGATGCAATCCG 292
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 243 GAAGTCTGGTTATGCTTTTGTGTATTTTGAGGATGAGCGCGATGCTGAAGATGCAATCCG 302
Query 293 TGGGACTGACAATACCACTTTTGGCTATGAGCGACGCAAGTTATCAGTCGAGTGGGCCAA 352
| |||||||||||||||||||||| |||| |||||||||||||||||| || ||||||||
Sbjct 303 TAGGACTGACAATACCACTTTTGGATATGGGCGACGCAAGTTATCAGTTGAATGGGCCAA 362
Query 353 GGGCTTTAAGGGTGAACGTGGGAAGCCTCGTGATGGAAAGGCAGCCTCAAATCAGAGGCC 412
|| |||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 363 GGACTTTCAGGGTGAACGTGGGAAGCCTCGTGATGGAAAGGCAGTCTCGAATCAGAGGCC 422
Query 413 TACAAAGACACTCTTTGTCATCAACTTTGACCCTATTCGCACAAGAGAGCGTGATATGGA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TACAAAGACACTCTTTGTCATCAACTTTGACCCTATTCGCACAAGAGAGCGTGATATGGA 482
Query 473 GAGACACTTTGAGCCATATGGTAAAGTTCTCAATGTTCGCATAAGGCGCAATTTTGCTTT 532
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 483 GAGACACTTTGAGCCATATGGTAAAGTTCTCAATGTTCGCATGAGGCGCAATTTTGCTTT 542
Query 533 TGTTCAATTTGCAACCCAGGAAGATGCAACCAAGGCTCTTGACTGTACACACAACAGCAA 592
||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 543 TGTTCAATTCGCAACCCAGGAAGATGCAACCAAGGCTCTTGATTCTACACACAACAGCAA 602
Query 593 AATATTGGATAGGGTTGTTTCTGTTGAGTATGCTTTGAGGGAGGATGGTGAAAGAGAAGA 652
| || |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 603 ATTACTGGATAAGGTTGTTTCTGTTGAGTATGCCTTGAGGGAGGCTGGTGAAAGAGAAGA 662
Query 653 TAGATATGCTGGCAGTCCAAGAAGGAGATCTCCTAGCCCAGTGTATCGGAGGCGTCCTAG 712
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TAGATATGCTGGCAGTCGAAGAAGGAGATCTCCTAGCCCAGTGTATCGGAGGCGTCCTAG 722
Query 713 TCCTGATTATGGCCGTCCTCGCAGTCCTGAATATGACAGGTACAAGGGTCCTGCTCCTTA 772
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TCCTGATTATACCCGTCGTCGCAGTCCTGAATATGACAGGTACAAGGGTCCTGCTCCTTA 782
Query 773 TGAAAGACGTAGGAGTCCAGAGTATAGGCGTCGCAGTCCAGACTATGGCAGAGCAAGAGC 832
||||||||||| ||||||||| ||| ||||||||||| |||||||||| |||||||||||
Sbjct 783 TGAAAGACGTAAGAGTCCAGATTATGGGCGTCGCAGTTCAGACTATGGTAGAGCAAGAGC 842
Query 833 TAGGAGTCCGGGCTATGACAGCAGCCGGTCCCCTATTCAAAGAGCAAGAGGTTGAAGATG 892
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 843 TAGGAGTCCGGGCTATGACAGAAGCCGGTCCCCGATTCAAAGAGCAAGAGGTTGAAGATG 902
Query 893 TTGTTGGGCGATGGATTTTTAAAATGTATGGG 924
||||||||||||||||||||| ||||||||||
Sbjct 903 TTGTTGGGCGATGGATTTTTAGAATGTATGGG 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5