BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483829
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46650.1 | Symbols: B5 #1, ATCB5-C, CB5-C | cytochrome B5 is... 878 0.0
> AT2G46650.1 | Symbols: B5 #1, ATCB5-C, CB5-C | cytochrome B5
isoform C | chr2:19151646-19152600 FORWARD LENGTH=766
Length=766
Score = 878 bits (475), Expect = 0.0
Identities = 596/651 (92%), Gaps = 21/651 (3%)
Strand=Plus/Plus
Query 1 TCTCTATATAAAGTTCTCTGCTTCAAGTTACTTTCTCAGCAAGAGCAATCC-----CAAT 55
|||||||||||||||||||| |||||||||||||||||||| |||||| || |||
Sbjct 100 TCTCTATATAAAGTTCTCTGTTTCAAGTTACTTTCTCAGCACGAGCAA-CCAAAAGTAAT 158
Query 56 CCTATGGCGAATCTAATTTCGTTTCACGATGTGGCTAAACATAAGTGCAAGAACGATTGT 115
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 CATATGGCGAATCTAATTTCGTTTCACGATGTGGCTAAACATAAGTGCAAGAACGATTGT 218
Query 116 TGGATTCTCATCCATGGAAAGGTCTATGACATCAGTACTTTCATGGACGAACATCCCGGC 175
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 219 TGGATTCTCATCCATGGAAAGGTCTATGACATCAGCACTTTCATGGACGAACATCCCGGA 278
Query 176 GGTGACAATGTTCTCCTCGCCGTCACCGGAAAAGACGCGTCGATCGATTTCGAAGACGTG 235
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 279 GGTGACAATGTTCTCCTCGCCGTCACCGGGAAAGACGCGTCGATCGATTTCGAAGATGTG 338
Query 236 AACCATAGCAAAGATGCGAAGGAGCTGATGAAGAAATACTGTATCGGTGACGTTGACCAG 295
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 339 AACCATAGCAAAGATGCCAAGGAGCTAATGAAGAAATACTGTATCGGTGACGTTGACCAG 398
Query 296 TCAACGGTTCCGGTGACGAAAAAGTATATTCCGCCGTGGGAGAAGGAATCTACGGCGGCG 355
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 399 TCAACGGTTCCGGTGACGCAACAGTATATTCCGCCGTGGGAGAAGGAATCTACGGCGGCG 458
Query 356 GAAGCAACTAAAGAAGAATCTGGAAACAAGCTTCTTGTTTACTTGATTCCTCTCTTGATT 415
||| |||||||||||||||||||||| ||||| ||| | ||||| ||||||||||||||
Sbjct 459 GAAACAACTAAAGAAGAATCTGGAAAGAAGCTGCTTATCTACTTAATTCCTCTCTTGATA 518
Query 416 CTCGGCGTTGCTTTCGCTCTCAGATTCTACAACAACAAGTAGACAAAATTATGATGAAAA 475
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 519 CTCGGCGTTGCTTTCGCTCTCAGATTCTACAACAACAAGTAGACCAAATTATGATGAACA 578
Query 476 AATA-ATAA-AGATAGTCTTAGTGTTCTTGGTTTTTGTGTGTTCGTAATAACGGGCTTTT 533
|| |||| || | ||||| ||||||||||||| || |||| |||||||||||||| |
Sbjct 579 GATTGATAAGAGTT--TCTTACTGTTCTTGGTTTTCGTTTGTTGGTAATAACGGGCTTCT 636
Query 534 TATGTGAAGATTTGGCCCAT----C--AT---TCAGAATTTGATTATTATGTCTTATTTA 584
||||||||||||||| |||| | || |||||||| || ||| ||||||||||||
Sbjct 637 TATGTGAAGATTTGGGCCATTTGGCCCATCGCTCAGAATTGGACTATAATGTCTTATTTA 696
Query 585 TTTTATGTTAATGGGCCTTAGT-AGTAGGCCCTTTGTTGATATATGCCAAT 634
||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 697 TTTTATGTTAATGGGCCGTA-TCAGTAGGCCCTTTGTTGATATATGCCAAT 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30592595523
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5