BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483834
Length=2140
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46700.1 | Symbols: ATCRK3, CRK3 | CDPK-related kinase 3 | c... 3203 0.0
> AT2G46700.1 | Symbols: ATCRK3, CRK3 | CDPK-related kinase 3 |
chr2:19182724-19186578 REVERSE LENGTH=2180
Length=2180
Score = 3203 bits (1734), Expect = 0.0
Identities = 2034/2173 (94%), Gaps = 43/2173 (2%)
Strand=Plus/Plus
Query 1 TCTCCTTCTTCTCTCATTCCTTTCGTTTATCG--TT-TTCTTGCAA-TTTAGATCTCTCT 56
||| |||||||||||||||||||||||||||| || ||||| ||| ||| |||||||||
Sbjct 12 TCTTCTTCTTCTCTCATTCCTTTCGTTTATCGTTTTCTTCTTCCAATTTTGGATCTCTCT 71
Query 57 TCCTTTTGATCCGATCCGTTACTCGCTC-------C-T--ATGTTG----C--TTCA--- 97
||||||||||| ||| ||||||| |||| | | || ||| | || |
Sbjct 72 TCCTTTTGATCTGATTCGTTACTTGCTCTATGTTGCTTCAATTTTGAATTCTTTTGATTT 131
Query 98 ---ATT-T-T-GAGGAGATGGGGCAATGTTACGGGAAGGTTAATCAGAGTAAGCAAAATG 151
||| | | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 TTGATTGTGTGGGGGAGATGGGGCAATGTTACGGGAAGGTTAATCAGAGTAAGCAAAATG 191
Query 152 GTGAAGAAGAAGCTAATACGACTACTTATGTTGTTTCCGGCGATGGGAACCAGATTCAGC 211
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 192 GTGAAGAAGAAGCTAACACGACTACTTATGTTGTTTCCGGCGACGGGAATCAGATTCAGC 251
Query 212 CTTTAACTCCGGTTAATTACGGTCGAGCTAAGAACACTCCAGCTAGGTCATCGAATCCGA 271
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CTCTAACTCCGGTTAATTACGGTCGAGCTAAGAACACTCCAGCTAGGTCATCGAATCCGA 311
Query 272 GTCCTTGGCCTAGTCCTTTCCCTCACGGATCAGCGAGTCCTCTTCCTTCTGGTGTTTCTC 331
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 312 GTCCTTGGCCTAGTCCTTTCCCTCACGGATCAGCGAGCCCTCTTCCTTCTGGTGTTTCTC 371
Query 332 CTTCTCCGGCGAGAACTTCCACTCCGAGGAGGTTTTTCCGACGGCCTTTCCCGCCGCCAT 391
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 372 CTTCTCCGGCCAGAACTTCCACTCCGAGGAGGTTTTTCCGACGGCCTTTCCCGCCGCCTT 431
Query 392 CCCCGGCGAAACACATTAAGGCTTCATTGATCAAACGGCTTGGAGTGAAGCCTAAGGAAG 451
| || || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 432 CTCCAGCCAAACACATTAAGGCTTCTTTGATCAAACGTCTTGGAGTGAAGCCTAAGGAAG 491
Query 452 GTCCGATCCCAGAGGAGAGAGGTACTGAGCCGGAACAGTCGCTTGATAAGAGCTTTGGTT 511
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 492 GTCCGATCCCTGAGGAGAGAGGAACTGAGCCGGAGCAGTCGCTTGATAAGAGCTTTGGTT 551
Query 512 ATGGCAAGAACTTTGGGGCTAAGTATGAATTGGGGAAAGAAGTGGGTCGAGGGCATTTCG 571
|||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 552 ATGGCAAGAATTTTGGTGCTAAGTACGAATTGGGGAAAGAAGTGGGTCGAGGGCATTTTG 611
Query 572 GTCATACTTGTTCTGGTCGTGGGAAGAAGGGAGATATTAAGGATCATCCTATTGCTGTCA 631
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 612 GTCATACTTGTTCTGGCCGTGGTAAGAAGGGAGATATTAAGGATCATCCTATTGCTGTCA 671
Query 632 AGATCATCTCCAAGGCTAAGATGACAACAGCAATTGCAATTGAAGATGTTCGCAGGGAGG 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AGATCATCTCCAAGGCTAAGATGACAACAGCAATTGCAATTGAAGATGTTCGCAGGGAGG 731
Query 692 TGAAGTTACTGAAATCATTATCTGGACACAAACATCTAATCAGATATTATGATGCATGTG 751
|||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||
Sbjct 732 TGAAGTTACTGAAATCATTATCTGGACACAAATATTTAATCAAATATTATGATGCATGTG 791
Query 752 AGGACGCCAATAACGTATACATAGTCATGGAGTTGTGTGAGGGTGGAGAACTTTTGGACA 811
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 792 AGGACGCCAATAACGTATACATAGTCATGGAGTTGTGTGATGGTGGAGAACTTTTGGACA 851
Query 812 GAATTTTAGCAAGGGGTGGAAAATACCCGGAGGATGACGCAAAAGCGATTGTCGTACAAA 871
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 852 GAATTTTAGCAAGGGGTGGTAAATACCCGGAGGATGATGCAAAGGCGATTGTCGTACAAA 911
Query 872 TTCTAACTGTTGTTTCATTTTGTCATCTCCAAGGAGTTGTGCACCGAGACTTAAAGCCAG 931
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 912 TTCTAACTGTTGTTTCATTTTGTCATCTCCAAGGAGTTGTGCACCGTGACTTAAAGCCAG 971
Query 932 AGAATTTTCTATTTACTTCTAGCCGCGAAGACTCAGACTTGAAGCTTATTGATTTTGGTC 991
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 972 AGAATTTTCTATTTACATCAAGCCGCGAAGACTCAGACTTGAAACTTATTGATTTTGGTC 1031
Query 992 TCTCGGACTTTATTAGACCTGATGAAAGGCTGAATGATATTGTTGGAAGTGCGTATTATG 1051
|||| ||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||
Sbjct 1032 TCTCAGACTTTATTAGACCTGATGAAAGACTGAATGATATAGTTGGAAGTGCCTACTATG 1091
Query 1052 TCGCGCCTGAAGTTCTACACAGATCATATAGCTTTGAGGCTGATATATGGAGTATTGGAG 1111
|||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1092 TCGCGCCTGAAGTTTTACACAGGTCATATAGCCTTGAGGCTGATATATGGAGTATTGGAG 1151
Query 1112 TTATTACATATATACTCTTATGTGGAAGCCGACCTTTTTGGGCACGGACAGAATCTGGAA 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TTATTACATATATACTCTTATGTGGAAGCCGACCTTTTTGGGCACGGACAGAATCTGGAA 1211
Query 1172 TCTTTCGTACTGTGCTAAGAACTGAACCGAACTATGATGACATACCTTGGCCTTCTTGTT 1231
||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1212 TCTTTCGCACTGTACTAAGAACTGAACCAAACTATGATGACGTACCTTGGCCTTCTTGTT 1271
Query 1232 CATCAGAAGGGAAAGAGTTTGTGAAACGACTTCTCAACAAAGACTATAGGAAACGAATGT 1291
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1272 CATCAGAAGGTAAAGATTTTGTGAAACGACTTCTCAACAAAGACTATAGGAAGCGAATGT 1331
Query 1292 CTGCAGTTCAAGCTTTGACTCATCCGTGGTTACGGGATGATAGTCGTGTGATTCCTTTAG 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 CTGCAGTTCAAGCTTTGACTCATCCGTGGTTACGGGATGATAGTCGTGTGATTCCTTTAG 1391
Query 1352 ACATTCTGATCTATAAGTTGGTCAAAGCCTACTTGCACGCGACACCTCTTAGACGGGCTG 1411
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1392 ACATTTTGATCTATAAGTTGGTCAAAGCCTACTTGCACGCGACACCTCTTAGACGAGCTG 1451
Query 1412 CTTTAAAGGCACTAGCGAAAGCATTGACCGAGAATGAGCTAGTCTATCTTAGAGCACAGT 1471
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1452 CTTTAAAGGCGCTAGCAAAAGCATTGACCGAGAACGAGCTAGTCTATCTTAGAGCACAGT 1511
Query 1472 TCATGCTCTTGGGACCAAACAAAGATGGAAGCGTCTCCCTCGAAAACTTCAAGATGGCGA 1531
||||||| |||||||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 1512 TCATGCTGTTGGGACCAAACAAAGATGGTAGCGTCTCTCTCGAAAACTTCAAGACGGCGC 1571
Query 1532 TTATGCAAAATGCAACAGATGCAATGAGAGAATCAAGAGTTCCTGAAATACTTCACACTA 1591
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 TTATGCAAAACGCAACAGACGCAATGAGAGAATCAAGAGTTCCTGAAATACTTCACACTA 1631
Query 1592 TGGAATCTCTAGCGTATAGGAAGATGTATTTCGAAGAGTTTTGTGCAGCAGCAATTAGTA 1651
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1632 TGGAATCTCTAGCGTATAGGAAGATGTATTTCGAAGAGTTCTGTGCAGCAGCAATTAGCA 1691
Query 1652 TTCATCAACTTGAAGCTGTTGACGCATGGGAAGAGATTGCAACCGTC-GGTTTCCAGCAT 1710
| |||||||| |||||||||||||| ||||||||||| ||||| | | ||||||||||||
Sbjct 1692 TCCATCAACTAGAAGCTGTTGACGCGTGGGAAGAGATAGCAACGG-CAGGTTTCCAGCAT 1750
Query 1711 TTCGAAACCGAGGGAAACCGAGTAATCACAATCGAAGAGCTAGCAAGGGAACTGAATGTG 1770
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1751 TTTGAAACCGAGGGAAACCGAGTGATCACAATCGAAGAACTAGCAAGGGAACTGAATGTG 1810
Query 1771 GGTGCGTCTGCGTATGGACACTTGAGAGAATGGGTAAGAAGCAGTGACGGGAAGCTGAGT 1830
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1811 GGTGCGTCTGCGTATGGACACTTGAGAGATTGGGTAAGAAGCAGTGACGGGAAGCTGAGT 1870
Query 1831 TACTTAGGGTTCACTAAGTTCTTGCACGGAGTTACTCTTCGTGCTGCTCACGCAAGACCT 1890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871 TACTTAGGGTTCACTAAGTTCTTGCACGGAGTTACTCTTCGTGCTGCTCACGCAAGACCT 1930
Query 1891 CGCTAGTCCTTCTTCTCTATTTTTTAGGTCTTTTTC--AATATGATTTTTCTTCATCAGA 1948
||||||||||||| || ||||| ||||||||||| ||||| |||||||||||||||
Sbjct 1931 CGCTAGTCCTTCT-CTA-ATTTT--AGGTCTTTTTCTTAATATTTTTTTTCTTCATCAGA 1986
Query 1949 ACAGAGTTGATAGACTTTCTGAGAGACGTGAGGGGTATTTTCGTCCGTTTGtttttttCT 2008
|||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1987 ACAGAGCAAATAGACTT-CTGAGAGAGGTGAGGGGTATTTTCGTCCGTTTGTTTTGTTCT 2045
Query 2009 TTATCCATATTATTATAGAGTTTCAATTTTATGGTACAGAAAAGACCAAAATGAAAAGAA 2068
||||| |||||| | |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2046 TTATCG-TATTAT-A--GAGTTTCAATTTTATGGTACAGAAAAGACCAAAATGAAAAAAA 2101
Query 2069 GATaaaaaaaTGTGCATAAGGTAGATGGATTTCAGTCAGTTTTT-GCAAGTATGATATAT 2127
|||| ||| ||||||||||||||||||| || |||||| ||||| |||||||| ||||||
Sbjct 2102 GATATAAACATGTGCATAAGGTAGATGGGTTACAGTCATTTTTTTGCAAGTATAATATAT 2161
Query 2128 GAGCATCTATGGT 2140
|| ||||||||||
Sbjct 2162 GAACATCTATGGT 2174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106123952130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5