BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483835
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46710.1 | Symbols: | Rho GTPase activating protein with PA... 2486 0.0
> AT2G46710.1 | Symbols: | Rho GTPase activating protein with
PAK-box/P21-Rho-binding domain | chr2:19191935-19194849 FORWARD
LENGTH=1731
Length=1731
Score = 2486 bits (1346), Expect = 0.0
Identities = 1492/1563 (95%), Gaps = 7/1563 (0%)
Strand=Plus/Plus
Query 1 AAACGATGACTAACTTCTCCCGATCCAAATCCACCGGAACTATCGGTTTCCCGGAGTTTA 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 166 AAACGATGACTAACTTCTCCCGATCCAAATCCACCGGAACTATCGGGTTCCCGGAGTTTA 225
Query 61 AACCGACTCGACCCGGTCCAGACATATACGAGAACGGCCACAACGATGACGACGAGTACG 120
|||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 226 AACCCACTCGACCCGGTCCAGACAAATACGAGAACATCCACAACGATGACGACGAGTACG 285
Query 121 AGGAAGGACATAGCACTACGAGCACAGACTACTACGACGCTTCAACGCCGTTGAGCTCAC 180
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 286 AAGAAGGACATAGCACTACGAGTACAGACTACTACGACGCTTCAACGCCGTTGAGCTCAC 345
Query 181 ACGCGTCAAGATCAGGGAACGGGTCCGGGTCGGGTCAGTTAACGATCGTAGACCTTCTTG 240
||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 346 ACGCGTCAAGATCCGGGAACGGGTCCGGCTCGGGTCAGTTAACGGTCGTAGACCTTCTTG 405
Query 241 CGGCGGTTCTGAGGAAGTCGCTGGTGATGTCGTGTGCCATGGAGAGAGGGGACGATGACG 300
|||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||
Sbjct 406 CGGCGGTTCTGAGGAAGTCGTTGGTGATGTCGTGTGCGATGGAGAGAGGGGAAGATGACG 465
Query 301 TGGCGGCGTCTATGGATATAGGTTGGCCGACGGAGGTTAAGCACGTGAGTCACGTGACTT 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 TGGTGGCGTCTATGGATATAGGTTGGCCGACGGAGGTTAAGCACGTGAGTCACGTGACTT 525
Query 361 TTGACCGGTTTAATGGTTTTCTTGGTCTTCCGTCTGAGCTCGAACCGGAGGTTCCTCCTC 420
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 526 TTGATCGGTTCAATGGTTTTCTTGGTCTTCCTTCTGAGCTCGAACCGGAGGTTCCTCCTC 585
Query 421 GAGCTCCTAGCGCCAGTGTAAGTGTATTTGGAGTATCGGCAAAGTCAATGCAATGCTCTT 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 586 GAGCTCCTAGCGCCAGTGTAAGTGTATTTGGAGTATCGGCGAAGTCAATGCAATGCTCTT 645
Query 481 ATGACGACAGAGGAAATAGTGTCCCAACAATCCTTCTCAGGATGCAAAAACGTCTATACA 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 ACGACGACAGAGGAAATAGTGTCCCAACAATCCTTCTCAGGATGCAAAAACGTCTATACA 705
Query 541 CCGAAGGAGGTCTTAAAGCAGAAGGAATATTCCGAATAAATCCAGACAACGGCAAAGAAG 600
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 706 CTGAAGGAGGTCTTAAAGCAGAAGGAATTTTCCGAATAAATCCAGACAACGGCAAAGAAG 765
Query 601 AGCATGTCCGAAGACAGCTAAACCGCGGTGTGGTACCACGTGGAATTGACGTTCATTGCT 660
|||||||||| |||||| | ||| | ||||||||||||||||||||||| ||||||||||
Sbjct 766 AGCATGTCCGTAGACAGTTGAACTGTGGTGTGGTACCACGTGGAATTGATGTTCATTGCT 825
Query 661 TGGCAGGATTAATAAAGGCATGGTTTAGGGAGCTACCTACAGGAGTGCTTGATGTGTTGA 720
|||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 826 TGGCGGGTTTAATAAAGGCGTGGTTCAGGGAGCTACCTACAGGAGTGCTTGATGTGTTGA 885
Query 721 CACCAGAGCAAGTGATGAGGTGTAACACAGAGGAGGATTGTAGCCGGCTAGTGACACTTC 780
||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 886 CACCAGAGCAAGTAATGAGGTGTAACACGGAGGAGGATTGTAGCCGGCTAGTGATACTTC 945
Query 781 TTCCTCCCGTTGAATCTGCGCTTCTCGACTGGGCCATTGGTCTAATGGCGGATGTGGTGG 840
||||||| |||||||||||| |||| || |||||||| ||||||||||||||||||||||
Sbjct 946 TTCCTCCGGTTGAATCTGCGATTCTTGATTGGGCCATCGGTCTAATGGCGGATGTGGTGG 1005
Query 841 AGCATGAACAGTTTAACAAAATGAATGCTCGCAATGTAGCTATGGTCTTTGCCCCAAACA 900
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1006 AGCATGAACAGTTTAACAAAATGAATGCTCGCAATGTAGCTATGGTCTTTGCTCCAAATA 1065
Query 901 TGACTCAAATGGCAGATCCTTTAACTGCACTAATCCACGCGGTGCAAGTGATGAACTTTC 960
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1066 TGACTCAAATGGCAGATCCTTTAACTGCACTCATCCACGCAGTGCAAGTGATGAACTTTC 1125
Query 961 TCAAGACTTTGATCTTAATGAACCTCAAAGAGAGGGACAACGCAGACGCGAAAGCAAGGT 1020
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1126 TCAAGACTTTGATCTTAATGAACCTCAAAGAAAGGGAAAACGCAGACGCGAAAGCAAGGT 1185
Query 1021 GGCTCGAGAAACAAACATCTAATCCATCAGAAGAATGGGAATCACAACACTCTGAGATAT 1080
||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1186 GGCTCAAGAAACAAACATCTGATCCATCAGAAGAATGGGAATCACAACACTCCGAGATAT 1245
Query 1081 TAAGCCCTGAGAAACCCAACAATAATAACCCTAAGTTTTTGAGAGTGGCTACTCTGTGTA 1140
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1246 TAAGCCCTGAGAAACCAAACAATAATAACCCTAAGTTCTTGAGAGTGGCTACTCTGTGTA 1305
Query 1141 GGCTAGAGGCTGACAATGAAGAAAAGTTTTGGAACATAAAGAAGAGAAACGATCATGAAG 1200
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1306 GGCTAGAGGCTGACAATGAAGAAGAGTTTTGGAATATAAAGAAGAGAAACGATCATGAAG 1365
Query 1201 CTGTTTTAAATACTTCATCGGGTAATGAAAACATCGGACCGGTACAAAGGTTATGTAAGC 1260
||||||| |||||||||||||||||| ||| || ||||||||||||||||| |||||||
Sbjct 1366 GTGTTTTAGATACTTCATCGGGTAATGGAAATATTGGACCGGTACAAAGGTTGTGTAAGC 1425
Query 1261 ATCCACTGTTTCAGTTAAGCAAATCCACAAAGAAAGCTTTTGTAAGTAATCGAGATGAAG 1320
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1426 ATCCATTGTTTCAGTTAAGCAAATCCACCAAGAAAGCTTTTGTAAGTAATCGAGATGAAG 1485
Query 1321 GAAGGAAAGGACGAGAAGCTTGGAGTTCACGTCTCTCTTCTTTGCCTTGGTAAAATTTTC 1380
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 GAAGAAAAGGACGAGAAGCTTGGAGTTCACGTCTCTCTTCTTTGCCTTGGTAAAATTTTC 1545
Query 1381 TTACCTCACTTTATTTTTCATGTTTTTGAGAGTGTAAAAAATATTGTGAAATATGATTAT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TTACCTCACTTTATTTTTCATGTTTTTGAGAGTGTAAAAAATATTGTGAAATATGATTAT 1605
Query 1441 AGGTGTTAGTTGTTTGAAA-TAGGGATAAATTTATATCCAATCAATTCAGAAATGGAAAC 1499
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1606 AGGTGTTAGTTGTTTGAAAATAGGGATAAATTTACATCCAATCAATTCAGAAATGGAAAC 1665
Query 1500 AAATGTATGCTAGTT-CTTGTCTAAGAGAAAACTCATGTATACTCTATTCACAAAAACAG 1558
|||||||| |||||| ||| ||| ||||||||||||| | ||||||||||||||||||
Sbjct 1666 AAATGTATCCTAGTTACTT-TCTGAGAGAAAACTCAT--A--CTCTATTCACAAAAACAG 1720
Query 1559 AGC 1561
|||
Sbjct 1721 AGC 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77057836575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5