BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483845
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46800.1 | Symbols: ZAT, ATMTP1, MTP1, ZAT1, ATCDF1 | zinc t... 2061 0.0
AT3G58810.1 | Symbols: MTPA2, ATMTPA2, MTP3, ATMTP3 | metal tol... 235 8e-61
> AT2G46800.1 | Symbols: ZAT, ATMTP1, MTP1, ZAT1, ATCDF1 | zinc
transporter of Arabidopsis thaliana | chr2:19237490-19239405
FORWARD LENGTH=1371
Length=1371
Score = 2061 bits (1116), Expect = 0.0
Identities = 1224/1278 (96%), Gaps = 0/1278 (0%)
Strand=Plus/Plus
Query 206 GATGGAGTCTTCAAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTAGGAAAATCCGA 265
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 93 GATGGAGTCTTCAAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTTGGAAAATCTGA 152
Query 266 AGAAGAAAGAATTATTGTGGCAAGTAAAGTCTGTGGAGAAGCGCCTTGTGGCTTTTCAGA 325
||||| ||||| |||||||| |||||||||||||||||||| || ||||| ||||||||
Sbjct 153 TGAAGAGAGAATAATTGTGGCGAGTAAAGTCTGTGGAGAAGCACCATGTGGGTTTTCAGA 212
Query 326 TTCTAAGAATGCTTCCGGGGATGCTCAGGAACGCTCTGCTTCTATGCGGAAGCTTTCTAT 385
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 213 TTCTAAGAATGCTTCCGGGGATGCTCACGAACGCTCTGCTTCTATGCGGAAGCTTTGTAT 272
Query 386 CGCGGTCGTGATGTGTCTAGTGTTCATGAGCGTTGAAGTTGTTGGTGGCATTAAAGCCAA 445
||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 273 CGCCGTCGTGCTGTGTCTAGTGTTCATGAGTGTTGAAGTTGTTGGTGGGATTAAAGCCAA 332
Query 446 TAGTTTGGCTATTTTAACCGATGCAGCTCATTTGCTCTCTGACGTTGCTGCCTTTGCTAT 505
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TAGTTTAGCTATATTAACCGATGCAGCTCATTTGCTCTCTGACGTTGCTGCCTTTGCTAT 392
Query 506 CTCCCTCTTCTCATTGTGGGCTGCTAGCTGGGAAGCGACTCCCACGCAGACTTACGGGTT 565
||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||
Sbjct 393 CTCCCTCTTCTCATTGTGGGCTGCTGGCTGGGAAGCGACTCCTAGGCAGACTTACGGGTT 452
Query 566 CTTCAGGATTGAGATTTTGGGAGCTCTTGTATCTATCCAGCTCATTTGGTTGCTCACGGG 625
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 453 CTTCAGGATTGAGATTTTGGGTGCTCTTGTATCTATCCAGCTCATTTGGTTGCTCACGGG 512
Query 626 TATTCTGGTTTATGAAGCCATTATCAGAATTGTTACAGAGACCAGTGAGGTTAATGGATT 685
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 513 TATTCTGGTTTATGAAGCGATTATCAGAATTGTTACAGAGACCAGTGAGGTTAATGGATT 572
Query 686 CCTCATGTTTCTTGTTGCTGTGTTTGGTCTAGTGGTGAACATCATAATGGCTGTTATGCT 745
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 573 CCTCATGTTTCTGGTTGCTGCCTTTGGTCTAGTGGTGAACATCATAATGGCTGTTCTGCT 632
Query 746 AGGGCATGATCATGGTCACAGTCATGGGCATGGACATAGCCATGGCCATGACCATCACAA 805
||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||||||||
Sbjct 633 AGGGCATGATCATGGTCACAGTCATGGACATGGGCATGGCCACGGCCATGACCATCACAA 692
Query 806 TCATAGCCATGGGGTGACTGTTACTACCCATCACCATCATCATGATCATGAACATGACCA 865
|||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |||
Sbjct 693 TCATAGCCATGGGGTGACTGTTACCACTCATCACCATCATCACGATCATGAACATGGCCA 752
Query 866 TAGTCATGGTCATGGAGAGGACCAGCACCATGCTCATGGGGATGTCACTGAGCAACTGTT 925
|||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||
Sbjct 753 TAGTCATGGTCATGGAGAGGACAAGCATCATGCTCATGGGGATGTTACTGAGCAATTGTT 812
Query 926 GGACAAATCGAAGACTCAAGTCGCAGCAAAAGAGAAAAGAAAGAGAAACATCAATGTCCA 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 813 GGACAAATCGAAGACTCAAGTCGCAGCAAAAGAGAAAAGAAAGAGAAACATCAATCTCCA 872
Query 986 AGGAGCTTATCTGCATGTCCTTGGGGATTCCATCCAGAGTGTTGGTGTTATGATTGGAGG 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 AGGAGCTTATCTGCATGTCCTTGGGGATTCCATCCAGAGTGTTGGTGTTATGATTGGAGG 932
Query 1046 AGCTATCATTTGGTACAACCCGGAATGGAAGATAGTGGATCTGATCTGCACACTTGTCTT 1105
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 933 AGCTATCATTTGGTACAATCCGGAATGGAAGATAGTGGATCTGATCTGCACACTTGCCTT 992
Query 1106 TTCGGTTATCGTCATGGGAACAACCATCAACATGAGTCGAAACATTCTAGAAGTATTGAT 1165
||||||||| ||| | ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 993 TTCGGTTATTGTCCTAGGAACAACCATCAACATGATTCGCAACATTCTAGAAGTATTGAT 1052
Query 1166 GGAGAGTACACCCAGAGAGATTGACGCCACAAAGCTCGAAAAGGGTCTGCTCGAAATGGA 1225
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1053 GGAGAGTACACCCAGAGAGATTGACGCCACAAAGCTCGAAAAGGGTTTGCTCGAAATGGA 1112
Query 1226 AGAAGTGGTGGCTGTTCATGAGCTTCACATTTGGGCTATCACAGTGGGAAAAGTGCTATT 1285
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1113 AGAAGTGGTGGCTGTTCATGAGCTCCACATATGGGCTATCACAGTGGGAAAAGTGCTATT 1172
Query 1286 GGCTTGCCATGTCAATATCAGACCAGAAGCAGATGCAGACATGGTGCTCAACAAGGTAAT 1345
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1173 GGCTTGCCATGTCAATATCAGACCAGAAGCAGATGCAGATATGGTGCTCAACAAGGTAAT 1232
Query 1346 GGATTACATCCGCAGGGAGTACAACATTAGTCATGTTACGATACAAATCGAGCGTTAAAA 1405
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1233 TGATTACATCCGCAGGGAGTACAACATTAGTCATGTCACGATACAAATCGAGCGCTAAAA 1292
Query 1406 GCAAAGTAAGATCTGATGAAGGGTTTTTGTATCAGCATTCTCATTAACAATAAAATCAAT 1465
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 GCTAAGTAAGATCTGATGAAGGGTTTTTGTATCAGCATTCTCATTAACAATAAAATCAAT 1352
Query 1466 AAAGTTTCTACATTTTTC 1483
||||||||||||||||||
Sbjct 1353 AAAGTTTCTACATTTTTC 1370
Score = 89.8 bits (48), Expect = 7e-17
Identities = 77/89 (87%), Gaps = 10/89 (11%)
Strand=Plus/Plus
Query 56 AAATAGCTTTCTTCTTTTGGCCC-TGT-CTCCAGAGAT---T-CTTATATACCACCGAG- 108
||||||||||||||||||||||| | | | |||||||| | ||||||||| || |||
Sbjct 1 AAATAGCTTTCTTCTTTTGGCCCCT-TAC-CCAGAGATAGATTCTTATATACTACTGAGA 58
Query 109 -TCTTCAATTTCTGCAACTTTTGTATCTC 136
||||||||||||||||||||||||||||
Sbjct 59 ATCTTCAATTTCTGCAACTTTTGTATCTC 87
> AT3G58810.1 | Symbols: MTPA2, ATMTPA2, MTP3, ATMTP3 | metal tolerance
protein A2 | chr3:21749966-21752006 FORWARD LENGTH=2041
Length=2041
Score = 235 bits (127), Expect = 8e-61
Identities = 337/437 (77%), Gaps = 20/437 (5%)
Strand=Plus/Plus
Query 984 CAAGGAGCTTATCTGCATGTCCTTGGG-GATTCCATCCAGAGTGTTGGTGTTATGATTGG 1042
||||| |||||||| || || | |||| ||||| || ||||| || || || ||||| ||
Sbjct 1462 CAAGGGGCTTATCTTCACGTGC-TGGGAGATTCGATACAGAGCGTAGGAGTGATGATAGG 1520
Query 1043 AGGAGCTATCATTTGGTACAACCCGGAATGGAAGATAGTGGATCTGATCTGCACACTT-G 1101
|||||| ||||| ||||| || ||||| |||||||| | ||| |||| |||||| || |
Sbjct 1521 AGGAGCAATCATATGGTATAAGCCGGAGTGGAAGATCCTTGATTTGATATGCACA-TTGG 1579
Query 1102 TCTTT-TCGGTTATCGTCAT-GGGAACAACCATCAACATGAGTCGAAACATTCTAGAAGT 1159
| ||| || || || || | ||| ||||| || ||| | | ||||||||||| ||
Sbjct 1580 T-TTTCTCTGTGATTGTGTTAGGG-ACAACAATTGGGATGCTTAGGAACATTCTAGAGGT 1637
Query 1160 ATTGATGGAGAGTACACCCA-GAGAGATTGACGCC-ACAAAGCTCGAAAA-GG-GTCTGC 1215
|| |||||| ||| ||| ||||||||||| || |||| ||| ||||| || || ||
Sbjct 1638 TTTAATGGAGTCAACA-CCACGAGAGATTGAC-CCGACAATGCTTGAAAAGGGAGTGTG- 1694
Query 1216 TCGAAATGGAAGAAGTGGTGGCTGTTCATGAGCTTCACATTTGGGCTATCACAGTGGGAA 1275
| ||||| |||||||||||||||||||||||||||||||||||||| || || || || |
Sbjct 1695 T-GAAATTGAAGAAGTGGTGGCTGTTCATGAGCTTCACATTTGGGCGATTACTGTCGGCA 1753
Query 1276 AAGTGCTATTGGCTTGCCATGTCAATATCAGACCAGAAGCAGATGCAGACATGGTGCTCA 1335
|| | | ||||| || ||||| || |||||||| || ||||| ||||| ||||| |
Sbjct 1754 AACTTTTGTTGGCATGTCATGTTAAAATCAGACCTGAGGCAGAGGCAGATATGGTTTTGG 1813
Query 1336 ACAAGGTAATGGATTACATCC-GCAGGGAGTACAACATTAGTCATGTTACGATACAAATC 1394
||||| | || |||||||| | ||||| ||||||||||||| || || || || |||
Sbjct 1814 ACAAGATTATCGATTACATTAAG-AGGGAACACAACATTAGTCACGTGACTATTCAGATC 1872
Query 1395 GAGCGTTAA--AAGCAA 1409
|| ||| || ||||||
Sbjct 1873 GAACGTCAATGAAGCAA 1889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73142194065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5