BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483852
Length=1906
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46850.1 | Symbols: | Protein kinase superfamily protein | ... 1507 0.0
> AT2G46850.1 | Symbols: | Protein kinase superfamily protein
| chr2:19251066-19253368 FORWARD LENGTH=1974
Length=1974
Score = 1507 bits (816), Expect = 0.0
Identities = 936/995 (94%), Gaps = 4/995 (0%)
Strand=Plus/Plus
Query 3 GAAAACCTGAAATGcctcctctgtttcttccttcttcttcctctgctctgtttctacttc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 GAAAACCTGAAATGCCTCCTCTGTTTCTTCCTTCTTCTTCCTCTGCTCTGTTTCTACTTC 66
Query 63 ttctcctcctcttaactctccaaaccctaacttccatctctctctctcAGCCAGACGCTC 122
||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||||
Sbjct 67 TTCTCCTCCTCTTAACTCTCCAAACCCTAACCTCTATCTCTCTCTCTCAGCCACAGGCTC 126
Query 123 TCCGTTCACCGGAAATGTGTGGAAACttctcagtctcctttcctttccacctctcttcct 182
|||||||||| |||| ||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 127 TCCGTTCACCAGAAAAGTGTGGAAACTTCTCTGTCTCCTTCCCTTTCCAACTCTCTTCCT 186
Query 183 cctcctccgccgccacttttcgactctcctGC-ACAAACTCATCCACTCTGTTTCTCCAT 241
|||||||||| ||| ||||||||||||||||| | |||||| |||||||||||||| ||
Sbjct 187 CCTCCTCCGCAGCCGCTTTTCGACTCTCCTGCGA-AAACTCCTCCACTCTGTTTCTTCAC 245
Query 242 ATAAACCACCAAAGTTACCGAATCATCGAGTTCTTCACCGACGGTCTCCTCGTAGACTTC 301
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 ATAAACCACCAAAGCTACCGAATCATCGAGTTCTTCACCGACGGTCTCCTCGTAGACTTC 305
Query 302 CCTTCATCTCCTTCTTGTCGCCAATTCAACGACTTACGCTCTTTCCCTTTCTCCGCAAAC 361
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CCTTCGTCTCCTTCTTGTCGCCAATTCAACGACTTACGCTCTTTCCCTTTCTCCGCAAAC 365
Query 362 CAATTCTTCTCCATCTCTTTCGAAAACGTAATCGGTCTTTATGACTGTGAAGATTCTTCT 421
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 366 CAATTCTTCTCCATCTCTTTCGAAAACGTAATCGGTCTTTACGACTGCGAAGATTCTTCT 425
Query 422 CTCTGTAAATTCGGTTGCGAAACCAACGATCTCTTTGGTTGCGATGGCAGAGAGGAAGAT 481
||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||
Sbjct 426 CTCTGTAAATTCGGTTGCGAAACCAACGATCTCTTCGGTTGTGACGGCAGAGAAGAAGAC 485
Query 482 GAAACTTCCGGCGGAGATATCGGTTGTTGCTACCCTCTGTCCGATCACAGCGCGTGGCGT 541
||||| ||||| ||||||||||| |||||||| ||| |||| ||||| ||||||||||||
Sbjct 486 GAAACCTCCGGTGGAGATATCGGATGTTGCTATCCTTTGTCTGATCATAGCGCGTGGCGT 545
Query 542 GCAGGCGATGATTTCTCTGTTTTTAGTAAATATGGATGCAGAGGATTCTCTTCGTGGTTT 601
| ||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||
Sbjct 546 GTAGGTGATGATTTCTCTGTGTTTAGTAGATATGGATGCAGAGGATTCTCTTCGTGGCTT 605
Query 602 GTTCCACGAGGGACGAACAGAGGAAATCGAGGCGTTAAGTTGGAGTGGGCTATTCCAAGA 661
|||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct 606 GTTCCAAGAGGGACGAACAGAGGAAAAAGAGGCGTTAAATTAGAGTGGGCTATTCCAAGA 665
Query 662 AACTCGTCGGAGGCTATTTGTGATCGTGAGGCTCGAACTGTTAACGCTACGGCTATTGAA 721
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AACTCGCCGGAGGCTATTTGTGATCGTGAGGCTCGAACTGTTAACGCTACGGCTATTGAA 725
Query 722 GGAAGTGTTCGTTGTGTGTGCCGTGATGGCTTCGTCGGCGACGGCTTCGTCCATGGCACC 781
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 726 GGAAGTGTTCGTTGTGTGTGCCGTGATGGCTTCGTCGGCGACGGCTTCCTCCATGGCACC 785
Query 782 GGTTGCTTAAAATCTTGCTAT-AAAGACGGAAAGGAATTATATGGAGGCAAATGCAAGAT 840
||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 786 GGTTGCTTAAAATCTTGCT-TCAAAGACGGAAAGGAATTATATGGAGACAAATGCAAGAT 844
Query 841 CAAGAAACACAACGGGAAGAAACTCACCGTTTTAGCCGGTGTTTTGGCTCCTCTGTTCAT 900
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 845 CAAGAAACACAACGGGAAGAAACTCACTGTTTTAGCCGGTGTTTTGGCTCCTCTGTTCAT 904
Query 901 ACTTGGCTCACTGTTAGCTCTCTTCTGTCTCCTTAAACGTCCTGTTACAACTCACAAAGA 960
||| ||||||||||||||||||||||||||||| |||||||| || |||| |||||||||
Sbjct 905 ACTAGGCTCACTGTTAGCTCTCTTCTGTCTCCTAAAACGTCCGGTAACAAGTCACAAAGA 964
Query 961 CCAGCAGTTCGATATCTCTACCTCAACTACTACTA 995
|| ||||||||||| ||||| ||||||| ||||
Sbjct 965 TCAACAGTTCGATATATCTACAACAACTACCACTA 999
Score = 1461 bits (791), Expect = 0.0
Identities = 865/902 (96%), Gaps = 0/902 (0%)
Strand=Plus/Plus
Query 1002 CTCTTCTCTTCACTTACAGTGAGCTAGATGAAGCCACCAAAGGGTTTCAAGATTCACAGA 1061
||| ||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 1036 CTCGTCTCTTCACGTACCGTGAGTTAGAAGAAGCCACCAAAGGGTTTCAAGATTCACAAA 1095
Query 1062 AACTCACACAAGGGAAAACTGGAACAATCTATTCAGGCAATTTAACAAACGGAACACGCG 1121
||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1096 AACTCACACAAGGCAAAACCGGAACAATCTACTCAGGCAATCTAACAAACGGAACACGCG 1155
Query 1122 TGATCGTTCACAAGGTTCTTTGCGAAAACAAGATTGAATTCATGGAGATTTCGTCTCAGA 1181
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1156 TGATCGTTCACAAGGTTCTCTGCGAAAACCAGATTGAATTCATGGAGATTTCGTCTCAGA 1215
Query 1182 TCGATCATCTATCCGCGGTTTTGCATAGAAACCTCGCGAGAATCATAGGTTTCTGTATGG 1241
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1216 TTGATCATCTATCCGCGGTTTTGCATAGAAACCTCGCGAGAATCATAGGTTTTTGTATGG 1275
Query 1242 ATATTGGATATAACCCACTCGTTGTTTACGAGTATCCGGTAAACGGATCACTTGGAGACC 1301
||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1276 ATATTGGATATAATCCACTAGTTGTTTACGAGTATCCGGTAAATGGATCGCTTGGAGACC 1335
Query 1302 GATTGCGTCTAGGGCTTGATTGGTGCAAGAGAGTTAACATTGTAGCTGAAGTAGCTGGTT 1361
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1336 GATTGCGGCTAGGGCTTGATTGGTGCAAGAGAGTTAACATTGTAGCTGAAGTCGCTGGTT 1395
Query 1362 TACTCGCTTTACTTCAATACGAGAACTATCCACCGATTCTACACAACAACATTTCTTCTG 1421
||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1396 TACTCGCGTTACTTCAGTATGAGAACTATCCACCGATTCTACACACCAACATTTCTTCTG 1455
Query 1422 GTTACATCTTTTTAGACGAAGATTTTCAAGCTAAAGTCACAGGTTTTGGTTTACAGAGGA 1481
|| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1456 GTAACATCTTCTTAGACGAAGATTTTCAAGCTAAAGTCACAGGTTTTGGTTTGCAGAGGA 1515
Query 1482 AACAGAGGATTGATACTAGTATGTACGATTTCGCGGTTTTGCTTCTAGAGATTGTGACTG 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 AACAGAGGATTGATACTAGTATGTACGATTTCGCGGTTTTGCTTCTAGAGATTGTGACTG 1575
Query 1542 GTTTAAAGCAGAGAGAAGAGACAGTGACTCAAGCGTTGCAGAGGATTAGAAGCGGTAAGC 1601
|||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||
Sbjct 1576 GTTTAAAGCAGAGAGAAGAGACGGTAACTCAAGCGTTACAGAAGATTAGAAGCGGTAAGC 1635
Query 1602 TTGAAGAAATCGTGGATCCTTCTATGTATTTTCATGAGCAGCCTGTGGCTTTTAGAGAAC 1661
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1636 TTGAAGAAATCGTGGATCCTTCAATGTATTTTCATGAGCAGCCTGTGGCTTTTAGAGAAC 1695
Query 1662 AGATTGGTTTAGTAGCTGATATCGCGACTCGGTGCGTTTTGTTTGGTGGTGATGGGAAAT 1721
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1696 AGATTGGTTTAGTAGCTGATATAGCGACTCGGTGCGTTTTGTTTGGTGGTGATGGGAAAT 1755
Query 1722 TTGGAATGGTTGATGCAGCTAGAGAGCTGTTGCAGATCGCTGGAAACAACGGTGGAGGCG 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756 TTGGAATGGTTGATGCAGCTAGAGAGCTGTTGCAGATCGCTGGAAACAACGGTGGAGGCG 1815
Query 1782 GTTGCGATAAGAAAAGAGATGGAATTGAGGAAACGTTTTCGAATTCGAGTTTGCTTCAAA 1841
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1816 GCTGCGATAAGAAAAGAGATGGAATTGAGGAAACGTTTTCGAATTCAAGTTTGCTTCAGA 1875
Query 1842 TGATTTCTATGTCTCCTGATTCTATCTATCTCCCTAAGACCTAAAACAAAAACAGAGGAA 1901
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1876 TGATTTCTATGTCTCCTGATTCTATCTATCTCCCTAAAACCTAAAACAAAAACAGAGGAA 1935
Query 1902 GT 1903
||
Sbjct 1936 GT 1937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94377024600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5