BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483853
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46860.1 | Symbols: AtPPa3, PPa3 | pyrophosphorylase 3 | chr... 1171 0.0
> AT2G46860.1 | Symbols: AtPPa3, PPa3 | pyrophosphorylase 3 | chr2:19253688-19255275
FORWARD LENGTH=908
Length=908
Score = 1171 bits (634), Expect = 0.0
Identities = 711/747 (95%), Gaps = 10/747 (1%)
Strand=Plus/Plus
Query 1 TTTGTTCTTGTCCCTTTGAAACGAAATAAGATCCAAAGATGAGTGAAGAAACATATGAAG 60
|||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 5 TTTGTTTTTGTCCCTTTGAAACGAAAGAAGATCCAAAGATGAGTGAAGAAGCATATGAAG 64
Query 61 AAACTCAGGAATCGAGTCAATCTCCTCGTCCAGTTCCAAAACTGAACGAGAGGATTCTCT 120
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 65 AAACTCAGGAATCAAGTCAATCTCCTCGTCCGGTTCCAAAACTGAACGAGAGGATTCTCT 124
Query 121 CAACACTATCCAGGAGATCAGTAGCTGCACATCCATGGCACGACCTTGAGATTGGTCCTG 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 125 CAACACTATCCAGGAGATCTGTAGCTGCACATCCATGGCACGACCTTGAGATTGGTCCTG 184
Query 181 AAGCTCCATTGGTCTTCAATGTGGTGGTTGAGATCACAAAGGGAAGCAAAGTGAAATATG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 AAGCTCCATTGGTCTTCAATGTGGTGGTTGAGATCACAAAGGGAAGCAAAGTGAAATATG 244
Query 241 AACTAGACAAAAAGACCGGTCTTATCAAGGTTGATCGGATCTTGTACTCGTCCGTTGTTT 300
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 245 AACTCGACAAAAAGACCGGTCTTATCAAGGTTGACCGGATCTTGTACTCCTCCGTTGTTT 304
Query 301 ATCCTCACAACTACGGATTCATCCC-CAGGACATTGTGTGAAGACAATGATCCTCTTGAT 359
|||| ||||| |||||||||||||| | ||||||||||||||||||| ||||||||||||
Sbjct 305 ATCCACACAATTACGGATTCATCCCAC-GGACATTGTGTGAAGACAACGATCCTCTTGAT 363
Query 360 GTTCTTGTCCTTATGCAGGAACCAGTGCTTCCCGGATGCTTCCTCCGTGCTAGAGCCATT 419
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 364 GTCCTTGTCCTTATGCAGGAACCAGTGCTTCCCGGATGTTTCCTCCGTGCTAGAGCCATT 423
Query 420 GGATTAATGCCCATGATTGATCAGGGAGAGAAGGACGACAAAATCATCGCCGTATGTGCT 479
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 424 GGATTAATGCCCATGATTGATCAGGGAGAGAAAGACGACAAAATCATAGCCGTATGTGCT 483
Query 480 GATGATCCAGAGTACAAACATTTCACAGACATCAAACAACTCGCTCCTCATCGTCTCTCT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 484 GATGATCCAGAGTACAAACATTTCACAGACATCAAACAACTCGCTCCTCATCGTCTC-CA 542
Query 540 -GAAATCCGCCGTTTCTTCGAAGATTATAAGAAGAACGAGAACAAGGAAGTGGCTGTCAA 598
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 543 AGAAATCCGCCGTTTCTTCGAAGACTATAAGAAGAACGAGAACAAGAAAGTGGCTGTCAA 602
Query 599 CGATTTCTTGCCATCAGAGAGTGCACATGAAGCAATTCAGTACTCCATGGATCTATACGC 658
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 603 CGATTTCTTGCCATCAGAGAGTGCACATGAAGCTATTCAGTACTCCATGGATCTATACGC 662
Query 659 TGAGTATATTCTCCACACGTTGAGGAGATGAACAATCACCACATTAA-AGATGATTCT-T 716
||||||||||||||||||||||||||||||||||| || || | || | |||||||| |
Sbjct 663 TGAGTATATTCTCCACACGTTGAGGAGATGAACAA-CAACA-AC-AACATATGATTCTCT 719
Query 717 -CGCAGCATTCGCATATAATTAttttt 742
|||||||| ||||||||| ||| |||
Sbjct 720 TCGCAGCATCCGCATATAAATATATTT 746
Score = 108 bits (58), Expect = 1e-22
Identities = 84/95 (88%), Gaps = 7/95 (7%)
Strand=Plus/Plus
Query 746 gtttt-tttttgttttttATCCTTGTGATGTTGCAATTTTGTTCAATTGTATAATTTGAA 804
||||| | |||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 815 GTTTTCTGTTTGTTTTTT-TCCTTGTGATGATGCAATTTTGTTCAATTGTATAATTTGAA 873
Query 805 ACTG--A---TATGATGCCAAACGCAGTTTTGCCT 834
|||| | ||| ||| |||||||||||||||||
Sbjct 874 ACTGGTAAGATATAATGACAAACGCAGTTTTGCCT 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5