BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483854
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46870.1 | Symbols: NGA1 | AP2/B3-like transcriptional facto... 2026 0.0
AT3G61970.1 | Symbols: NGA2 | AP2/B3-like transcriptional facto... 313 4e-84
> AT2G46870.1 | Symbols: NGA1 | AP2/B3-like transcriptional factor
family protein | chr2:19260918-19262404 FORWARD LENGTH=1487
Length=1487
Score = 2026 bits (1097), Expect = 0.0
Identities = 1328/1429 (93%), Gaps = 57/1429 (4%)
Strand=Plus/Plus
Query 1 CATCATAACACTGCTGATTTCTCTCTTCTTGTTTTCTCATTCTTCTTCTGAAAAATCTTG 60
||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 15 CATTATAACTCTGCTGATTTCTCTCTTCTTGTTTTCTCATTCTTCTTCTAAAAAATCTTG 74
Query 61 ACAAC-tttt-tttttgtttttgttt-tCT---TTCTCT----------G-G--AT-T-- 98
||||| |||| |||||| |||| ||| ||| || | | | | || |
Sbjct 75 ACAACTTTTTGTTTTTG-TTTTCTTTCTCTGAATTTTTTAAAAGAGAGAGAGCTATGTAG 133
Query 99 -T-TGAAACAGTAAGAGATATAGATATAGAGAGACAGAGAAAGATGATGATCAGTGAAGT 156
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 CTATGAAACAGTAAGAGATATAGATATAGAGAGACAGAGAAAGATGATGATCAGTGAAGT 193
Query 157 TAGGCTAAACCCACTTTCTATTTATGTATAATTAGGTCAATCACATCACCAATCTCCTCC 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 TAGGCTAAACCCACTTTCTATTTATGTATAATTAGGTCAATCACATCACCAATCTCCTCC 253
Query 217 TCCAATTCTC-T--TC-C-T---AAAT-CTAGGGTTTTGCTTGTATCTC-CTCC-TTTCT 265
|||||||||| | || | | |||| ||||||||||||||||||||| | || |||||
Sbjct 254 TCCAATTCTCCTCCTCTCCTTCCAAATTCTAGGGTTTTGCTTGTATCTCACCCCCTTTCT 313
Query 266 CAATTCCCTCCGGAAGCTGTGAATT-CATCAAATTCCATTATTCTT-GGTCACACCCTTA 323
||||||||| |||| ||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 314 CAATTCCCTAGGGAAACTGTGAATTTCATCAAATTCCATTATTTTTTGGTCACACCCTTA 373
Query 324 A-GAGATCTG-G-GTTCTAAAGATGATGACAGATTTATCTCTCACaagagatgaagatga 380
| |||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 374 AAGAGATCTGAGAGTTCTAAAGATGATGACAGATTTATCTCTCACGAGAGATGAAGATGA 433
Query 381 agaagaagaagcaaagcccttagaagaagaaggagcaggaacgagagaagtagcagagag 440
|||||||| |||||||||||| |||||||| | |||| || | ||||||||||| ||
Sbjct 434 AGAAGAAG---CAAAGCCCTTAGCAGAAGAAG-A--AGGAGCGCGTGAAGTAGCAGACAG 487
Query 441 agagcaCATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGACTTGT 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 AGAGCACATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGACTTGT 547
Query 501 GATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGATTCATCTTCTAACGAGAAAGG 560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 548 GATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGATTCATCTTCAAACGAGAAAGG 607
Query 561 TTTGCTTTTAAACTTCGAAGATCTCACAGGCAAATCATGGAGGTTCCGTTACTCTTACTG 620
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 608 TTTGCTTTTAAACTTCGAAGATCTCACTGGCAAATCTTGGAGGTTCCGTTACTCTTACTG 667
Query 621 GAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGATTCGTTAAAGACAAAAA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGATTCGTTAAAGACAAAAA 727
Query 681 GCTTGACGCCGGAGATATTGTCTCTTTTCAAAGATGTGTCGGAGATTCAGGAAGAGATAG 740
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 728 GCTTGACGCCGGAGATATTGTCTCTTTCCAAAGATGTGTCGGAGATTCAGGAAGAGATAG 787
Query 741 TCGTTTGTTTATTGATTGGAGGAGACGACCTAAAGTCCCTGACCATCCTCATTTCGCCGC 800
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 788 CCGTTTGTTTATTGATTGGAGGAGAAGACCTAAAGTCCCTGACCATCCTCATTTCGCCGC 847
Query 801 CGGAGCTATGTTCCCTAGGTTTTACAGCTTTCCTTCGACGAGTTACAATCTGTATAATCA 860
||||||||||||||||||||||||||||||||||||||| | ||||| ||| ||||||||
Sbjct 848 CGGAGCTATGTTCCCTAGGTTTTACAGCTTTCCTTCGACCAATTACAGTCTTTATAATCA 907
Query 861 TCAGCAGCAACGTCATCATCAC-G-GC-GGTGGTTATAATTACCATCAAATTCCGAGAGA 917
|||||||||||||||||||||| | | |||||||||||||| |||||||||||||||||
Sbjct 908 TCAGCAGCAACGTCATCATCACAGTGGTGGTGGTTATAATTATCATCAAATTCCGAGAGA 967
Query 918 ATTTGGTTATGGTTACTTCGTTAGGTCAGTGGATCAGAGGAATAATCCGGCGGCTGCGGT 977
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 968 ATTTGGTTATGGTTACTTCGTTAGGTCAGTGGATCAGAGGAACAATCCTGCGGCTGCGGT 1027
Query 978 GGCTGATCCGTTGGTGATCGAATCTGTGCCGGTGATGATGCACGGAAGAGCTAATCAGGA 1037
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1028 GGCTGATCCGTTGGTGATTGAATCTGTGCCGGTGATGATGCACGGGAGAGCTAATCAGGA 1087
Query 1038 ACTTGTTGGAACGGCCGGGAAGAGACTGAGGCTTTTTGGAGTTGACATGGAATGCGGCGA 1097
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1088 ACTTGTTGGAACGGCCGGGAAGAGACTGAGGCTTTTTGGAGTTGATATGGAATGCGGCGA 1147
Query 1098 GAGCGGAATGACCAACAGTACGGAGGAGGAATCATCATCTTCCGGTGGAAGTTTACCACG 1157
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1148 GAGCGGAATGACCAACAGTACGGAGGAGGAATCATCATCTTCCGGTGGAAGTTTGCCACG 1207
Query 1158 TGGCGGTGGTGGTGGTGGTGCTTCGTCTTCCTCTTTCTTTCAGCTGAGACTTGGGAGTAG 1217
||| || |||||||||| |||| ||||||||||||||||||||||||||||| || ||
Sbjct 1208 TGGAGGCGGTGGTGGTG---CTTCATCTTCCTCTTTCTTTCAGCTGAGACTTGGAAGCAG 1264
Query 1218 CAGTGAAGATGACCACTTCACTAAGAAAGGAAAGTCTTCATTGTCTTTTGATTTGGATCA 1277
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 CAGTGAAGATGATCACTTCACTAAGAAAGGAAAGTCTTCATTGTCTTTTGATTTGGATCA 1324
Query 1278 ATAATAATTATGATGA--AATATTAGTTGGTATTTTAAGAAAAAATAATACACATATATA 1335
|||||||| ||||||| || |||||||||||||||||||||||| || | |||||||||
Sbjct 1325 ATAATAATGATGATGATGAA-ATTAGTTGGTATTTTAAGAAAAAA-AACATACATATATA 1382
Query 1336 ATTCTATATATATGACAACATAATGCATTGATTTCATTATAAATTTATC 1384
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 ATTCTATATATATGACAACATAATGCATTGATTTCATTATAAATTTATC 1431
> AT3G61970.1 | Symbols: NGA2 | AP2/B3-like transcriptional factor
family protein | chr3:22951463-22952851 FORWARD LENGTH=1389
Length=1389
Score = 313 bits (169), Expect = 4e-84
Identities = 342/419 (82%), Gaps = 37/419 (9%)
Strand=Plus/Plus
Query 436 gagagagagcaCATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGA 495
|||||||| ||||||||||||||||| || || ||||| || || || ||||||||||||
Sbjct 418 GAGAGAGAACACATGTTCGACAAAGTAGTAACACCAAGCGACGTTGGCAAACTAAACCGA 477
Query 496 CTTGTGATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGAT---T-CATCTTCTAA 551
|| |||||||| ||||||||||||||||||| |||||| |||||| | || | | ||
Sbjct 478 CTCGTGATCCCTAAGCAACACGCAGAGAGATACTTCCCATTAGATAACTCCA-CAACAAA 536
Query 552 CG--AG----AAAGGTTTGCTTTTAAACTTCGAAGATCTCACAG-GCAAA-TCATGGAGG 603
|| || |||||||||||| ||||||||||||||| | || | ||| |||||||||
Sbjct 537 CGACAGCAACAAAGGTTTGCTTCTAAACTTCGAAGATC-GA-AGTGGAAACTCATGGAGG 594
Query 604 TTCCGTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGA 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 595 TTCCGTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCCGT 654
Query 664 TTCGTTAAAGACAAAAAGCTTGACGCCGGAGATATTGTCTCTTTTCA-A-AGATGTGTCG 721
|| || |||||||| |||||||| || ||||| || || |||||||| | |||| | | |
Sbjct 655 TTTGTCAAAGACAAGAAGCTTGATGCTGGAGACATCGTTTCTTTTCAGAGAGAT-TCTTG 713
Query 722 GAGATTCAGGAAGAGATAGTCGTTTGTTTATTGATTGGAGGAGACGACCTAA-AGTCCCT 780
| || | |||| | || | ||| || |||||||||||||||||||| | ||||
Sbjct 714 TA-AT--A--AAGACA-AG-C-TTTAC--ATCGATTGGAGGAGACGACCTAAGATTCCC- 762
Query 781 GACCATCCTCATTTCGC----CGCCGGAGCTATGTTCCCTAGGTTTTACAGCTTT-CCT 834
|| |||| |||| || ||||||||||||||||||||||||||||| |||| |||
Sbjct 763 GATCATCATCATCA-GCAATTCGCCGGAGCTATGTTCCCTAGGTTTTACA-CTTTTCCT 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69678356460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5