BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483855
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46880.1 | Symbols: ATPAP14, PAP14 | purple acid phosphatase... 2111 0.0
> AT2G46880.1 | Symbols: ATPAP14, PAP14 | purple acid phosphatase
14 | chr2:19264573-19266446 REVERSE LENGTH=1577
Length=1577
Score = 2111 bits (1143), Expect = 0.0
Identities = 1262/1320 (96%), Gaps = 5/1320 (0%)
Strand=Plus/Plus
Query 1 TTTCATAGTCACTAACCTAAAAG----AATGGAGGAAGCTTGGAGGAGATTTGTTTTATT 56
||||||||||||||||||||||| |||||||||| || ||||||| ||||| |||
Sbjct 7 TTTCATAGTCACTAACCTAAAAGAATTAATGGAGGAAACTCGGAGGAGGTTTGTCATATC 66
Query 57 CTCTGTTCTAAGTGTTTCTTTGATCTACTTATGTCTTTCAACATGTCACGTTTCCGCCTA 116
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 67 CTCTGTTCTAAGTGTTTCTTTGATCTACTTATGTCTTTCGACATGTCACGTTTCCGCCTT 126
Query 117 CGGCTTCGGTAGAAGGCAGCTCCGGTTTAATACAGATGGTCGGTTCAAGATACTGCAAGT 176
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 127 CGACTTCGGTAGAAGGCAGCTCCGGTTTAATACTGATGGTCGGTTCAAGATACTGCAAGT 186
Query 177 GTCAGATATGCACTACGGTTTTGGCAAAGAGACGCAATGCTCAGACGTATCACCTGCAGA 236
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 187 GTCAGATATGCACTACGGTTTTGGCAAAGAGACGCAATGCTCAGACGTTTCACCTGCAGA 246
Query 237 ATTTCCTTACTGCTCCGATCTCAACACCACCTCCTTTTTAAAGCGAACTATCGCTTCCGA 296
|||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||
Sbjct 247 ATTTCCTTACTGCTCCGATCTCAATACTACCTCCTTTTTACAGCGAACTATCGCTTCCGA 306
Query 297 GAAGCCCGATCTCATCGTCTTCTCTGGAGACAATGTATATGGATTGTGCGAGACAAGAGA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 307 GAAGCCCGATCTCATCGTCTTCTCTGGAGACAATGTATATGGATTGTGCGAGACAAGTGA 366
Query 357 CGTGGCAAAATCGATGGACATGGCATTTGCTCCTGCCATCGAATCGGGGATTCCATGGGT 416
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 367 CGTGGCAAAATCGATGGACATGGCATTTGCTCCTGCGATCGAATCGGGGATTCCATGGGT 426
Query 417 GGCCATTTTGGGGAATCACGACCAAGAATCCGACATGACTAGAGAAACAATGATGAAATA 476
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GGCTATTTTGGGGAATCACGACCAAGAATCCGACATGACTAGAGAAACAATGATGAAATA 486
Query 477 CATCATGAAACTCCCAAACTCGTTGTCTCAAGTAAACCCTCCCGATGCTTGGCTATACCA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CATCATGAAACTCCCAAACTCGTTGTCTCAAGTAAACCCTCCCGATGCTTGGCTATACCA 546
Query 537 AATCGACGGTTTTGGTAATTACAATCTACAAATCGAGGGTCCTTTTGGCTCGCCTCTCTT 596
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 547 AATCGACGGTTTTGGTAATTACAATCTACAAATCGAGGGTCCTTTTGGCTCCCCTCTCTT 606
Query 597 CTTCAAATCCATTCTCAATCTCTATCTACTCGACGGTGGAGCTTACACCAAGCTCGATGG 656
|||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||
Sbjct 607 CTTCAAATCCATTCTCAATCTCTATCTACTAGACGGTGGATCTTACACGAAGCTTGATGG 666
Query 657 CTTTGGTTACAAATATGATTGGGTCAGAACCTCTCAACAGAATTGGTATGAACACACTTC 716
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 667 TTTTGGTTACAAATATGATTGGGTCAAAACCTCTCAACAGAATTGGTATGAACACACTTC 726
Query 717 TAAATGGCTTGAGATGGAACACAAGAGGTGGCCATTTCCACAGAATAGTACGGCACCGGG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 727 TAAATGGCTTGAGATGGAACACAAGAGGTGGCCATTTCCACAGAATAGTACGGCACCAGG 786
Query 777 ATTGGTTTACCTCCACATTCCAATGCCGGAATTTGCATTGTTCAACAAATCGACCGAGAT 836
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 787 ATTGGTTTACCTCCACATTCCGATGCCGGAATTTGCATTGTTCAACAAATCGACGGAGAT 846
Query 837 GACTGGAGTTAGACAAGAATCTACATGTTCTCCACCTATCAACTCTGGTTTCTTCACCAA 896
||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 847 GACTGGAGTAAGACAAGAATCTACTTGTTCTCCACCTATCAACTCTGGTTTCTTTACCAA 906
Query 897 ACTTGTCGAAAGAGGTGAAGTCAAGGGTGTTTTCAGCGGTCACGACCACGTCAACGACTT 956
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 907 ACTTGTCGAAAGAGGTGAAGTCAAAGGTGTTTTCAGTGGTCACGACCACGTCAACGACTT 966
Query 957 CTGTGCCGAACTCCATGGGATCAACCTTTGTTACGCAGGCGGTGCCGGGTATCATGGGTA 1016
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 967 CTGTGCCGAACTCCATGGGATCAACCTTTGTTACGCAGGCGGAGCCGGGTATCATGGGTA 1026
Query 1017 TGGAAAGGTTGGTTGGGCAAGGAGAGCAAGAGTAGTTGAGGCTCAGCTTGAGAAGACTAA 1076
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1027 CGGACAGGTTGGTTGGGCAAGGAGAGTAAGAGTAGTTGAGGCTCAGCTTGAGAAGACTAT 1086
Query 1077 GTATGGACGTTGGGGAGCTGTTGCTACAATCAAAACTTGGAAACGGCTCGATGATAAGAA 1136
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1087 GTATGGACGTTGGGGAGCTGTTGATACAATCAAAACTTGGAAACGGCTCGATGATAAGAA 1146
Query 1137 TCATTCTTTAATTGATACTCAACTTCTTTGGTCCAAGAACACAACTCTTGAACCAAATTT 1196
||||||||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 1147 TCATTCTTTGATTGATACTCAACTTCTCTGGACCAAGAACACAACTCTTGAGCCAAATTT 1206
Query 1197 TGGGTTTACTTGCTCTACTATACCACAACACTAATCATGAATCTGAGTACTTGTACAATG 1256
|||||||| ||||||||||||||||||||||| ||||| || | |||| ||||||||||
Sbjct 1207 TGGGTTTAGTTGCTCTACTATACCACAACACTGATCATTAAGCAGAGTTGTTGTACAATG 1266
Query 1257 ATTTGATATGTTTCATTTTCTTTATTTATGATTTACCATCTATTATTTTGTCTAGAATAA 1316
|| |||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 1267 ATATGATAT-TTTCATTTTCTTTATTTATGCTTTACTATCTATTATTTTGTTTAGAATAA 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5