BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483858
Length=2224
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46900.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Basic hel... 3123 0.0
> AT2G46900.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix,
Nulp1-type (InterPro:IPR006994); Has 2929 Blast
hits to 2464 proteins in 333 species: Archae - 2; Bacteria
- 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses
- 47; Other Eukaryotes - 1303 (source: NCBI BLink). | chr2:19269558-19272195
FORWARD LENGTH=2212
Length=2212
Score = 3123 bits (1691), Expect = 0.0
Identities = 2065/2238 (92%), Gaps = 56/2238 (3%)
Strand=Plus/Plus
Query 1 AGAGAAGCGAGGGATTAGCGTGTGTATCGACGAGAT-ATCATCTA---GTCGGAGTCGCC 56
||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||||||
Sbjct 1 AGAGAAGCGAGGGATTAGC--GTGTATCGACGAGATAATCATCTAGTCGTCGGTGTCGCC 58
Query 57 GCCTTTCTCCGCCGTCTTTAATCGTCCTTGTTGGATTTTCCGAAGACGAAGCAGGCGTAA 116
||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | ||
Sbjct 59 GCCTTTCTCCGCCGTCTGAAATCGTCCTTGTTCGATTTTCCGAAGACGAAGCAGGAG-AA 117
Query 117 -ACATGTCTGGGAGGTTGCTgaagaaggttctccaggaacacgaagaatcgaaactccag 175
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 118 GATATGTCTGGGAGGTTGCTGAAGAAGGTTCTCCAGGAACATGAAGATTCGAAACTTCAG 177
Query 176 aaacatcacgaagaagaagaagaagaggaagaagaggaagaagaagaagaaTCAGGAGCC 235
||||||||| ||||||| | | |||||||| | || ||||||||||||||||||
Sbjct 178 AAACATCAC------GAAGAAG-A-A-GAAGAAGA-G--GACGAAGAAGAATCAGGAGCC 225
Query 236 CGTTCTTCGATTAATCCATTCGATCTCTTGAACGACGGTGATGAAGATCCTGAGGAGATA 295
||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | |
Sbjct 226 CGTTCTTCGATTAATCCATTCGATCTCTTGAACGATGGTGATGAAGATCCTGA-G-G--A 281
Query 296 GAGGTTGATGATGAGACTATAGTTGTGAAGAAGAACGAAGATGCGGATCATCAGTCAAAG 355
|| |||||||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 282 GA--TTGATGATGAGACTATAGCTGAGAAGAAGAACGAAGATGCGGATCATCAGTC-AAG 338
Query 356 AAT-GTTGATAATGTGCAGCCGGCGTCAAAGAATAAGTCgaagaaaaagaaaaagaagaa 414
| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 339 TGTCGCTGATCATGTGCAGCCGGTGTCAAAGAATAAGTCGAAGAAAAAGAAAAAGAAGAA 398
Query 415 aaacaaagaGAGTGGTTCTAATGTGGCTAAAGCTGAAATCACTTTGGATGAAACTTTAGA 474
|||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct 399 GAACAAAGAGAGTGGCTCTAATGTGCCTAAAGCTGAAATGACTTTGGATGAAACTTTGGA 458
Query 475 AGCACTTGGTCTCAGTGCTAACTCTAAGCAAGATAAGGTTCAGGAGACTAAAGCAAATGC 534
|||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 459 AGCACTTGGTCTCAATGCTAACTCTAAGCAAGATAAGGTTCAGGAGACAAAACCAAATGC 518
Query 535 TGATTCTTCCAAAAAGGCTTCTTCACGATTTGTGTTGGAAGTAGATCCCAAGTATCTGAA 594
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 519 TGATTCTTCCAAAAAGGCTTCTTCACGATTTGTGTTGGAAATAGATTCCAAGTATCTGAA 578
Query 595 TCTTGAGAACGAGTTGAGGAGAATGTATGGTTCAAAGGCTATGAGATCATTTGAGAGTGA 654
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 579 TCTTGAGAACGAGTTGAGGAGAACGTATGGTTCAAAGGCTATGCGATCATTTGAGAGTGA 638
Query 655 GAGTGGCTCTCAAGGTGGTGGTAGCTCTAGACAAGTACGAGGGGGTAGACGTGGAGTCCA 714
||||||||||||||||||| |||||||| || ||||||||| || |||||||||||
Sbjct 639 GAGTGGCTCTCAAGGTGGTAGTAGCTCT-----AG-ACGAGGGGGAAGGCGTGGAGTCCA 692
Query 715 TCATATCACAAAGACGGTTCTGATATCTCCAAAGGAGAATTGGTCTCGCTGGGATAGATC 774
|||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct 693 TCATATCACAAAGACGGTTCTGGTATCTCCAAAAGAGAATTGGTCTCGATGGGATAGATC 752
Query 775 TTTCTCAATGGAGTTTCTAGAGACTAAAGATGGTAACAACTACTTCAGATATACCCATTC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TTTCTCAATGGAGTTTCTAGAGACTAAAGATGGTAACAACTACTTCAGATATACCCATTC 812
Query 835 ATCCTCATATGAGCAGGCTCAGAGGGCATTTCAGGCTGCACAGGCTATCCATGATTTGAA 894
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 813 ATCCTCATATGAGCAGGCTCAGAGAGCATTTCAGGCTGCACAAGCTATCCATGATTTGAA 872
Query 895 TGGTGTAGCAAGTGTCCTTATACACCATCCTTACCATATTGAGTCGCTCATAACTATGGC 954
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 873 TGGTGTAGCAAGTGTCCTTATACACAATCCTTACCATATTGAGTCGCTCATAACTATGGC 932
Query 955 GGACTACTTTAAGTTTGTTGGTGAGCATGATATGGCTGCAGATTCCATTGGAAAGTGCTT 1014
||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct 933 GGATTACTTTAAGTTTGTAGGTGAGAATGATATGGCTGCAGATTCCATTGGAAAATGCTT 992
Query 1015 GTACGGATTGGAGCGTGCATGGCATCCTATGTTCACTCCGTTCCAGGGTAATTGCCGGTT 1074
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 993 GTACGGTTTGGAGCGTGCGTGGCATCCTATGTTCACTCCGTTCCAGGGTAACTGCCGGTT 1052
Query 1075 GGAGTTTACCCACGA-GACAAACAAGCTGTTCTTCAAGACGCTTTTCACTCACATGAGAA 1133
|||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 GGAGTTTAACCACGATGA-AAACAAGCTGTTCTTCAAGACGCTTTTCACTCACATGAGAA 1111
Query 1134 ACATGGACAGGCGTGGCTGTCATAGGTCAGCGTTGGAGGTCTGCAAATTCTTGCTTTCGT 1193
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1112 ACATGGACAGGCGTGGCTGTCATAGGTCAGCGTTGGAGGTCTGCAAACTCTTGCTTTCCT 1171
Query 1194 TGGACATGAGTGATCCAGTAGGCGCTTTGTTTTGTGTGGACTACTTTGCTTTGAGAGCAG 1253
|||||| |||| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 TGGACACGAGTAATCCTGTGGGCGCTTTGTTTTGTGTGGACTACTTTGCTTTGAGAGCAG 1231
Query 1254 AGGAGTATGCGTGGCTGGAGCAATTCTCGGAGGAGTACCGCAATGACAACTCATTATGGC 1313
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1232 AGGAGTATGCGTGGCTGGAGCAATTCTCGGAGGAGTACCGAAATGATAACTCATTATGGC 1291
Query 1314 TCTTCCCTAATTTCTCTTATTCGCTTGCTATAGCCCGAGTTTATCTCGAGAAGATGGAGT 1373
|||| || |||||||||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct 1292 TCTTTCCGAATTTCTCTTATTCGCTTGCAATAGCACGAGTTTATCTTGAAAAGATGGAGC 1351
Query 1374 CTTCCTCTTCATCAGAAGCCACTCAC-GTAGATACTTCGAAGTCAA-GCTCTTTGGATCT 1431
|| ||||||| ||||||||||||| | | ||||||||||||| ||| |||||||||||||
Sbjct 1352 CTACCTCTTCCTCAGAAGCCACTCCCAG-AGATACTTCGAAG-CAAAGCTCTTTGGATCT 1409
Query 1432 CATGACACAAGCTTTGAAGCTTCATCCAACAGTACTCAAGAAGCTAGTGGACAAGGTACC 1491
|||||| |||||||||||||||||||||||||||||||| || |||||||| || |||||
Sbjct 1410 CATGACGCAAGCTTTGAAGCTTCATCCAACAGTACTCAACAAACTAGTGGAAAAAGTACC 1469
Query 1492 TTTAAAAGATCAGGCATGGACAAAGATACTCAAGCATTCTTACTTCCGATCAGATGAATC 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 TTTAAAAGATCAGGCATGGACAAAGATACTCAAGCATTCTTACTTCCGATCAGATGAATC 1529
Query 1552 AAAGATCCCATCCTTGGATCACCTTATTAACTTATATGTCGAAAGGAATTACCTTATATG 1611
||||||||| || || |||||||| || || ||||||| || |||||||| ||||||||
Sbjct 1530 AAAGATCCCGTCTTTAGATCACCTCATCAAAATATATGTTGAGAGGAATTATCTTATATG 1589
Query 1612 GAGGCTTCCAGATGTCCAGAAGTTGCTTCGCAGTGCTGCTGATTTAGTCATTGAGTCGCT 1671
||||||||||||||| ||||| |||||||| || |||||||||||||||||||| || ||
Sbjct 1590 GAGGCTTCCAGATGTACAGAAATTGCTTCGGAGCGCTGCTGATTTAGTCATTGAATCTCT 1649
Query 1672 GGAACAAAACGGAACCGAAGCCGAGAGCTGGCTTTGTGTAAGGAA-AGAAGCCTTCTCTG 1730
||||||| | ||||||||||| |||||||||||||||||||| | |||||| ||||||
Sbjct 1650 GGAACAAGATGGAACCGAAGCTGAGAGCTGGCTTTGTGTAAG-ATTAGAAGCTTTCTCTT 1708
Query 1731 CTGAGAATAACCAGTACTCTCATTTATCAACACATGATTTCTCTGATTCGATGCCAACTC 1790
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1709 CTGAGAATAACCAGTACTCTCATTTATCAACCCATGATTTCTCTGATTCGATGCCAACTC 1768
Query 1791 TCCCACCAGACAATCTACAGAACTTTGTGGCTGATCCAAGAATGGTGGGAGGAGAGCAAA 1850
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1769 TCCCACCAGACAATTTGCAGAACTTTGTGGCTGATCCAAGAATGGTGGGAGGAGAGCAAA 1828
Query 1851 TGGCTGAAGGCGGCGGGGGAGGTCAACGAC-AAGCACCACCAC---GTCCACGTGATGTG 1906
|||||||||| |||||| ||||||||| || |||||||||||| ||||||||||| ||
Sbjct 1829 TGGCTGAAGGTGGCGGGAGAGGTCAAC-ACCAAGCACCACCACCACGTCCACGTGATTTG 1887
Query 1907 GCAAATCGGAATCCATTTGCTGTGTTGTTTGAGTCAATACTTCCATGGGCTAATTTTGGA 1966
|||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1888 GCAAATCGGAGTCCATTAGCTGTGTTGATTGAGTCAATACTTCCATGGGCTAATTTTGGA 1947
Query 1967 GATGAAGACGATGAGATTGCACATGATGGTCAGCACCAACCAGACAACAATGGCTAAATC 2026
|||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 1948 GATGGAGAGGATGAGATTGCACATGATGCTCACCACCAACCAGACAACAATGGCTAA-TC 2006
Query 2027 AATGGCTCTAACTGAATAAAGAAGAAAACTGGTACAAATTTTACAAAATGTGGCCTTGCT 2086
|||||||||||||||| |||||||||||||| | ||| |||||||||||||||||| ||
Sbjct 2007 AATGGCTCTAACTGAAGAAAGAAGAAAACTGCTTTAAAGTTTACAAAATGTGGCCTTCCT 2066
Query 2087 TTTGTTGTACAGTGCCATTTTGATGGTTTAGTCTAAGGACTCGTGAAATTTGATACTTTG 2146
||||||||||||||||||||||||||||||||||| ||| || | |||| ||||| |
Sbjct 2067 TTTGTTGTACAGTGCCATTTTGATGGTTTAGTCTATGGA-TC---A--TTTGTTACTT-G 2119
Query 2147 GGTAAATCGGATTTAGTCATTTTCAATTCATGTTTCTGGTGGAATAATTGACAGCTTTCA 2206
||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 2120 GGTAAATCGGACTTGGTCATTTTCGATTCATGTT-CTGGTGGAATAATTGACAGCTTTCA 2178
Query 2207 TTGCCCAAAGGCTCGGTT 2224
|||| |||||||||||||
Sbjct 2179 TTGCTCAAAGGCTCGGTT 2196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110340797910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5