BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483863
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46930.1 | Symbols: | Pectinacetylesterase family protein |... 2117 0.0
> AT2G46930.1 | Symbols: | Pectinacetylesterase family protein
| chr2:19283519-19286347 FORWARD LENGTH=1614
Length=1614
Score = 2117 bits (1146), Expect = 0.0
Identities = 1369/1471 (93%), Gaps = 38/1471 (3%)
Strand=Plus/Plus
Query 35 CGGAGGAGATGAAGAGTGTGTTGCAG-ATTGCGGCGGCGATATCCTGGCTTTGTATGGTG 93
||| |||||||||||||||||||| | |||||||||||||||| ||||||||| | ||
Sbjct 99 CGGCGGAGATGAAGAGTGTGTTGC-GTATTGCGGCGGCGATATTCTGGCTTTGGCT-GT- 155
Query 94 GTAGGT-GTGATTGGGAGCGA-T-GGAATCGGGAATGTGAGAGATGCAGACGATGAGATC 150
|| | ||| || || | || | ||| | ||||||||||||||| ||||||||||||||
Sbjct 156 TTA--TCGTG-TTAGGTGTGATTGGGAGT-GGGAATGTGAGAGATACAGACGATGAGATC 211
Query 151 TCGTTACTCGAAAGTCAATTGGTGGTGACATCTCCGTCGCAGCTTCTTATGGTGCCTCTC 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 TCGTTACTCGAAAGTCAATTGGTGGTGACATCTCCGTCGCAGCTTCTTATGGTGCCTCTC 271
Query 211 ACTTTGATTCAGGCTGCTGCCTCCAAAGGAGCTGTGTGCCTGGATGGAACACTACCTGGT 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 ACTTTGATTCAGGCTGCTGCCTCCAAAGGAGCTGTGTGCCTGGATGGAACACTACCTGGT 331
Query 271 TATCATCTACACCGTGGTTCTGGATCAGGAGCTAACCGGTGGCTGATCCAACTCGAGGGT 330
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 332 TATCATCTACACCCTGGTTCTGGATCAGGAGCTAACCGGTGGCTCATCCAACTCGAGGGT 391
Query 331 GGAGGATGGTGCAACACACGTCGGAGCTGTATCTTCCGCAAAACCACTCGCCGTGGTTCA 390
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 392 GGAGGATGGTGCAACACACGTAGGAGCTGTATCTTCCGGAAAACCACTCGCCGTGGTTCA 451
Query 391 TCAAATCATATGGAGAAAGTTTTGGCCTTCACTGGAATATTGAGCAATAAAGCTAATGAG 450
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 452 TCAAATCATATGGAGAAAGTTTTGGCCTTCACTGGAATATTGAGCAATAAATCTAATGAG 511
Query 451 AATCCTGACTTCTTCAACTGGAACAGAGTCAAACTGCGTTACTGCGATGGTGCCTCTTTC 510
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 512 AATCCTGACTTCTTCAACTGGAACAGAGTCAAATTGCGTTACTGCGATGGTGCCTCTTTC 571
Query 511 ACAGGCGATAGTCAGGATCAGAGCTCACAACTTTACTATAGAGGACAACGAATTTGGCAA 570
|| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 572 ACCGGCGATAGTCAGGATGAGAGCTCACAACTTTACTATAGAGGACAACGAATCTGGCAT 631
Query 571 GCAGCTATGGAAGAACTACTGTCTAAAGGCATGCAAAAAGCAGAGCAGGCTCTACTTTCT 630
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 632 TCAGCTATGGAAGAACTACTCTCTAAAGGCATGCAAAAAGCAGAACAGGCTCTACTTTCT 691
Query 631 GGATGTTCAGCTGGGGGATTAGCTTCAATTCTACACTGCGATCAGTTCAAGGAACTATTA 690
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 692 GGATGTTCAGCTGGGGGATTAGCTTCCATCCTACACTGCGATCAGTTCAAGGAACTATTT 751
Query 691 CCGGGTACTACGAAAGTGAAATGCTTAAGTGATGCTGGAATGTTTATGGATGCAGTGGAT 750
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 CCGGGCACTACGACAGTGAAATGCTTAAGTGATGCTGGAATGTTTATGGATGCAGTGGAT 811
Query 751 GTCTCTGGAGGCCACTCTCTCCGGAAGATGTTTCAAGGTGTTGTTACAATACAGAACCTC 810
|||||||| |||||||| |||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 812 GTCTCTGGGGGCCACTCGCTCCGGAAAATGTTCCAAGGTGTTGTTACAGTACAGAACCTC 871
Query 811 CAAAAGGAACTCTCCACTACGTGTACAAAGCATTTGGATCCAACTTCGTGCTTCTTTCCC 870
||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 872 CAAAAGGAACTGTCCACTGCTTGTACAAAGCATTTGGATCCAACTTCGTGCTTCTTTCCC 931
Query 871 CAGAACTTGGTTTCAGGCATTAAGACTCCAATGTTTCTTCTCAATGCAGCATATGACGCT 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 CAGAACTTGGTTTCAGGCATTAAGACTCCAATGTTTCTTCTCAATGCAGCATATGACGCT 991
Query 931 TGGCAGGTACAAGAGAGTTTAGCTCCACCATCTGTTGACCTAAGCGGCTCTTGGAAGGCA 990
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 992 TGGCAGGTACAAGAGAGTTTAGCTCCACCATCAGTTGACCTAAGCGGCTCTTGGAAGGCA 1051
Query 991 TGCAAATCTGATCACTCGCATTGTAATTCATCTCAGATCCAATTCTTCCAAGACTTCAGG 1050
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1052 TGCAAATCTGATCACTCGCATTGTAATTCATCTCAGATCCAGTTCTTCCAAGACTTCAGG 1111
Query 1051 ACATCA-ATGGTGGATGCTGTAAAATCTTTCGCGACATCGACCCATAACGGTGTGTTCAT 1109
|| ||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1112 AC-TCATATGGTAGATGCTGTAAAGTCTTTCGCGACATCGACACATAACGGTGTGTTCAT 1170
Query 1110 AAACTCATGCTTCGCGCACTGCCAATCCGAAAGACAGGACACTTGGTATGCACCAGATTC 1169
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1171 AAACTCATGCTTCGCTCACTGCCAATCTGAAAGACAGGACACTTGGTATGCACCAGATTC 1230
Query 1170 TCCTACACTTCATGGCAAGACCGTTGCTGAATCTGTTGGTGATTGGTACTTTGACCGAAC 1229
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1231 TCCTACTCTTCATGGCAAGACCGTTGCTGAATCTGTTGGTGATTGGTACTTTGACAGAAC 1290
Query 1230 AACAGTCAAAGCCATTGACTGTCCTTACCCTTGTGACAAAACATGTCACAATCTTATCTC 1289
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1291 AACAGTGAAAGCCATTGACTGTCCTTACCCCTGTGACAAAACATGTCACAATCTCATCTT 1350
Query 1290 CAAGTGAG-T------T-A-A-A-A-TCTTCAAACTCAAACAACTTACTTGATTCTTACA 1337
|||||||| | | | | | | |||||||||||||||| ||||||||||||||| |
Sbjct 1351 CAAGTGAGATGACAAATGACATATACTCTTCAAACTCAAACAGCTTACTTGATTCTTATA 1410
Query 1338 AACTATACCATACCATTAGTAACAAT--TTC-TGAAAAACCACATTTCATCTTT-ACATA 1393
| |||| ||||||||||||||| ||| ||||||||| |||||||||||| |||||
Sbjct 1411 C-C-ATAC--TACCATTAGTAACAACAATTCCTGAAAAACCGCATTTCATCTTTTACATA 1466
Query 1394 GTTTCTT-TGTTTTCGACTAAAATAA-GTGATTTTATTTCGTGTGTTTTGTTGAATCCTT 1451
| | | | |||| |||| |||||| || | ||| || ||||||||||||| |||||||
Sbjct 1467 ATATGTGCTATTTT-GACTCAAATAAAGTTAGTTT-TT-CGTGTGTTTTGTTTAATCCTT 1523
Query 1452 GGATTCATTGGATTCTAATACACAAAGCATC 1482
|||||||||| ||||||||||||||||||||
Sbjct 1524 GGATTCATTGTATTCTAATACACAAAGCATC 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5