BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483864
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46940.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 944 0.0
AT3G62070.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 99.0 5e-20
> AT2G46940.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G62070.1);
Has 143 Blast hits to 141 proteins in 14 species: Archae -
0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 139; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19286658-19287581
REVERSE LENGTH=835
Length=835
Score = 944 bits (511), Expect = 0.0
Identities = 661/728 (91%), Gaps = 32/728 (4%)
Strand=Plus/Plus
Query 1 TAACTCTTCACTTTCTTCTGTC-TATCTTTAATGGCCTCTGAAGAGAGCATGATGATGAA 59
|||||||||||||||||| ||| |||||||||||| ||||||||||| |||||||| ||
Sbjct 46 TAACTCTTCACTTTCTTCGGTCATATCTTTAATGGGGTCTGAAGAGAGAATGATGAT-AA 104
Query 60 -TTCTTGTTCCA-TTATAGACGAAGAGTATGAAGATACAGATGATGGGTTTCATTGCCAG 117
||||| || || || ||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 105 GTTCTTCTT-CAGTTCTAGACGAAGAGTATGAATATACAGATGATGGGTTTCATTACGAG 163
Query 118 ACAAGGCAAAACAGTTTGTCTAGGTTATCTATCTGCACAAGTTCCTTCAACGAAGACGAT 177
||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct 164 ACAAGGCAAAACAGTTTGTCTAGATTATCTATCTGCACAAACTCCTTCCACGAAGACGAC 223
Query 178 GATGATAATCCTTCAGAGTTGGGTAATTTCATCTCTACGTTGTC-TCTAGAGAGCTTC-A 235
|| ||| |||||||||| |||||||||||| ||||||||||||| | ||||||||||| |
Sbjct 224 GAAGATCATCCTTCAGAATTGGGTAATTTCTTCTCTACGTTGTCGT-TAGAGAGCTTCAA 282
Query 236 CTGACGACGTCGGAGCCGAAGCTGACGGAGAAATCTCCGATGACGGTGAAGAATCGGATT 295
| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 283 C-GACGACGTCGGAGCCGAAGCTGACGTAGAAATCTCCGATGACGGTGGCGAATCGGATT 341
Query 296 CCGATAAAGAATCTTCCGGATTCTACTCTCTCCCGACGATCACATCTCGCCGGAGAAGAA 355
|||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 342 CCGACAAAGACTCTTCCGGATTTTACTCTCTACCGACGATCACATCTCGCCGGAGAAGAA 401
Query 356 AACTCACAGTTTCCGGCGGTTCAGAAACGAGCAAAGAGAGTGAGACGAAAATCGATGGAA 415
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 402 AACTCACAGTTTCCGGCGGTTTAGAAACGAGCAAAGAGAGTGAGACGAAAGTCGATGGGA 461
Query 416 GTAAGTGTA-----GT----CAACGGAGGGTATTAACGGAAAATAGTAAAAG-GGGTAAT 465
||||||||| || |||||||||||||||| |||||| |||||||| ||| |||
Sbjct 462 GTAAGTGTAATATAGTTAGTCAACGGAGGGTATTAAGGGAAAAGAGTAAAAGAGGG-AAT 520
Query 466 CAGCACGGTCACTGGTTTAACGGCGTGGAGAGAGACAGTGACGGCGGAGGAGAGTTGACG 525
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CAGTACGGTCACTGGTTTAACGGCGTGGAGAGAGACAGTGACGGCGGAGGAGAGTTGACG 580
Query 526 GTGTTAACGAAGGTGAGAGGAGGGAAGAAG---TCAATGAAGATGGGGTTTGAAGAAGTG 582
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 581 GTGTTAACGAAGGTGAGGGGAGGGAAGAAGAAGTCAATGAAGATGGGGTTTGAAGAAGTC 640
Query 583 AAAGCTTGTAGAGATCTCGGCTTCGAACTGGATGTTCCGGGTCGGGTTTCAATATCCGCC 642
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 641 AAAGCTTGTAGAGATCTCGGCTTCGAACTGGATGTTCCGGGTCGGGTTTCA------G-- 692
Query 643 GGGTCAAACCGAGAGACTAGTAGTGGCGGCAACTCTCCCATTGCCAACTGGCGTATCTCA 702
|| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GG-TCAAACCGTGAAACTAGTAGTGGCGGCAACTCTCCCATTGCCAACTGGCGTATCTCA 751
Query 703 AGTCCTGG 710
||||||||
Sbjct 752 AGTCCTGG 759
> AT3G62070.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G46940.1);
Has 137 Blast hits to 135 proteins in 12 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22983138-22984513
REVERSE LENGTH=1290
Length=1290
Score = 99.0 bits (53), Expect = 5e-20
Identities = 330/452 (73%), Gaps = 65/452 (14%)
Strand=Plus/Plus
Query 285 AGAATCGGATTCCGATAAAGA-ATCTTC-CGGATTCTACTCTCTCCCGACGA-TCACATC 341
||| || |||||||| ||||| | | | || || |||||||| ||| || || ||||
Sbjct 223 AGAGTCAGATTCCGACAAAGAGA-C-ACGTGGGTTTTACTCTCTTCCGGTGACTC-CATC 279
Query 342 TCGCCGGAGAAGAAAACTCACAGTTTCCGGCG-GTTCAGAAACGAGCAAAGAGAGTGAGA 400
|||||||||||||||||| ||||||||||||| ||| || | | | || |||||| | |
Sbjct 280 TCGCCGGAGAAGAAAACTTACAGTTTCCGGCGAGTT-AG--ATGCG-AATGAGAGT-A-A 333
Query 401 CGAAAATCGATGGAAGTAAGTGTAGTCAACGGAGGGTATTAACGGAAAATAGTAAAAGGG 460
| |||| |||| |||||||||||| ||||| || | || || | | |||||
Sbjct 334 C-AAAA---ATGGCAGTAAGTGTAGTTTACGGA-GGCA--AA-GG---A-GGGAAAAGAA 381
Query 461 GTAATCAGCACGGTCACTGGTTTAACGGCGTGGAGAGAGACAGTGACGGCGGAGGAG-A- 518
| || | | || | | ||||| | | ||| | ||| || ||| ||| ||| |
Sbjct 382 G-AA--A--AAGG-GA---G-TTAAC-G-G-AGAGTGTGAC-GT--CGGTGGAAGAGAAG 425
Query 519 G-TTGACGGTGTTAACGAAG-GTGAGAGGAGGGAAGA-A-GTCAATGAAGATGGGGTTTG 574
| || |||||||| ||| || | ||||| || ||| | ||| ||| |||||||||
Sbjct 426 GCTTAACGGTGTTGACG-AGAGCAAGAGG-TGG-AGATAGGTCGTTGAGGATGGGGTTAC 482
Query 575 AAGAAGTGAAAGCTTGTAGAGATCTCGGCTTCGAACTGGATGTTCCGGGTC-GGGT---- 629
|||||||||||||||||||||||||||| |||||| | || ||||||| || ||||
Sbjct 483 AAGAAGTGAAAGCTTGTAGAGATCTCGGGTTCGAATTAGAGGTTCCGGTTCCGGGTCGGA 542
Query 630 T-TCAATATC--CG-CCGGGTCAAAC--CGAGA----GACTAGTAGTGGCGGCAACTCTC 679
| || | || | ||||||| || ||| | ||||||||| |||||| |||| |
Sbjct 543 TATCTGTGTCAACAACCGGGTCGAATTTCGATACTCAGACTAGTAGCGGCGGCGACTCAC 602
Query 680 CCATTGCCAACTGGCGTATCTCAAGTCCTGGT 711
|||| |||| |||||||||||| |||||||||
Sbjct 603 CCATCGCCACCTGGCGTATCTCCAGTCCTGGT 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34661561430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5