BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483869
Length=2821
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46980.2 | Symbols: | unknown protein; Has 3995 Blast hits ... 3871 0.0
> AT2G46980.2 | Symbols: | unknown protein; Has 3995 Blast hits
to 3325 proteins in 374 species: Archae - 19; Bacteria - 205;
Metazoa - 2201; Fungi - 364; Plants - 149; Viruses - 22;
Other Eukaryotes - 1035 (source: NCBI BLink). | chr2:19299492-19304171
REVERSE LENGTH=2973
Length=2973
Score = 3871 bits (2096), Expect = 0.0
Identities = 2568/2782 (92%), Gaps = 87/2782 (3%)
Strand=Plus/Plus
Query 1 AGAAATTTCGAATTTCTGC-T-TCTCTCTCTCTATCAGTTTTCTCAGATCTTATTCCAGT 58
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 51 AGAAATTTCGAATTTCTGCTTCTCTCTCTCTCTATCAGTTTTCTCAGATCTTATTCCAGT 110
Query 59 TAATTTTCCGGCGATCTTCTTT-T-TC-----T--CTT--TGC-T---C-G---C----- 94
|||| ||||||||||||||||| | || | ||| | | | | | |
Sbjct 111 TAATATTCCGGCGATCTTCTTTCTCTCTTTGATCACTTAATTCTTCACCGGAATCAGAGA 170
Query 95 -TTAGGGATTTCGCAATTCAACCCGCGAGCTTTGATTAGGAAAAGATGAGCGACTATAGA 153
| |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 171 GTCAGGGCTTTCGCACTTGTACCCGCGAGCTTTGATTAGGAAAAGATGAGCGACTATAGA 230
Query 154 AGCTTCGGCAGTAACTATCACCCATCAAGTCAATCTAGAAAGATTTCTATAGGAGTTATG 213
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 231 AGCTTCGGCAGTAACTACCATCCATCAAGTCAATCTAGAAAGATTTCTATAGGAGTTATG 290
Query 214 GCTGATTCACAACC-AAAGAGAAATCTTGTGCCAGATAAGGATGATGGAGATGTTATTGC 272
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 291 GCTGATTCACAACCGAAA-AGGAATCTTGTGCCAGATAAGGATGATGGAGATGTTATTGC 349
Query 273 TAGAGTAGAAAAGTTGAAATCAGCCACAGTAACTGATTTACAAGCGAACAAGAAAGATAA 332
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 350 TAGAGTAGAAAAGTTGAAATCAGCCACCGTAACTGAATTACAGGCGAACAAGAAAGAGAA 409
Query 333 AGGTGATTTAGCTGCCAAGCAAAGGAATTCAGCTCAGGTCACAGGACATGTGACCTTACC 392
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 410 AAGTGATTTAGCTGCCAAGCAAAGGAATTCAGCTCAGGTCACAGGACATGTGACCTCACC 469
Query 393 TTGGAGGTCTCCGAGATTGTCTCATCGGAAATTAGGGACTCTAGAGAGTGTTCTTTGTAA 452
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 470 TTGGAGGTCTCCGAGATCGTCTCATCGGAAATTAGGGACTCTTGAGAGTGTTCTTTGTAA 529
Query 453 GCAAACGTCTAGTTTGTCTGGTAGCAAGGGATTAAACAAGGGGCTTAATGGAGCACATCC 512
|||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 530 GCAAACATCTAGTTTGTCTGGTAGCAAAGGATTAAACAAGGGACTTAATGGAGCACAT-C 588
Query 513 AG-CACCAGCTCGTGATTCATTTCAAAACTTTCCCATTTCGAGTCCTCAGCAGAGTCATG 571
|| ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 589 AGACACCAGCTCGTGAATCATTTCAAAACTGTCCCATTTCGAGTCCTCAGCACAGTCTTG 648
Query 572 GTGAGCTGAATGGTGGCAGGAACGATACAGTGATGGATAGGAGTCCAGAGAGGATGGAAG 631
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 649 GTGAGCTGAATGGTGGCAGGAACGATAGAGTGATGGATAGGAGTCCAGAGAGGATGGAAG 708
Query 632 ATCCTCCATCTGCAGTCTTGCTGCAAAAGGTTGCTTCAC--AGAGAG-AGATGGATAAGC 688
| ||||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||
Sbjct 709 AACCTCCATCTGCAGTCTTGCAGCAAAAGGTTGCCTCACAGAGAGAGAAGATGGATAAGC 768
Query 689 CAGACAAGGAGAAAAATGGAACTACTGATGTTTTGAGATCAAAACTCTGGGAAATATTGG 748
||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 769 CAGGGAAGGAGACAAATGGAACTACTGATGTTTTGAGATCAAAACTGTGGGAGATATTGG 828
Query 749 GAAAAGCTTCACCAGCAAATAATGAAGATGTGAACTCTGAGACCCCAGAAGTTGAGAAGA 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GAAAAGCTTCACCAGCAAATAATGAAGATGTGAACTCTGAGACCCCAGAAGTTGAGAAGA 888
Query 809 CCAACTTCAAGTTGAGTCAAGACAAGGGTTCAAATGATGATCCTCTTATTAAGCCTAGAC 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCAACTTCAAGTTGAGTCAAGACAAGGGTTCAAATGATGATCCTCTTATTAAGCCTAGAC 948
Query 869 ACAATTCAGATTCTATTGAAACTGATTCTGAAAGCCCTGAAAATGCTACCAGAAGGCCAG 928
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 ACAATTCAGATTCTATCGAAACTGATTCTGAAAGCCCTGAAAATGCTACCAGAAGGCCAG 1008
Query 929 TAACCAGATCTTTGTTGCAGAGGAGGGTAGGAGCCAAAGGTGTCCAGAAGAGAACCAAAG 988
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1009 TAACCAGATCTTTGTTGCAGAGGAGGGTAGGAGCCAAAGGTGTCCAGAAGAAAACCAAAG 1068
Query 989 CTGGTGCCAACTTAGGTCGCAAAAGCACAGAACAAGTAAATAATGTATTTTCATTTGAAG 1048
|||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| |
Sbjct 1069 CTGGTGCCAACTTAGGTCGCAAGTGCACAGAACAAGTAAATAGTGTATTTTCTTTTGAGG 1128
Query 1049 AAGGTTTGCGCGGAAAAATTGGCACTGCTATGAATTCTAGTGTTATACCAAAGAAACAAA 1108
||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||
Sbjct 1129 AAGGTTTGCGCGGAAAAATTGGCACTGCTGTGAATTCCAGTGTTATGCCAAAGAAACAAA 1188
Query 1109 GGGGAAGAAGAAAAAACACTGTTGTACAATGTCGTAAGGCTCATTTTCGCAGAAAGGATG 1168
|||| ||||||||||||||||||||| |||| ||||||||||||| ||| | ||||||||
Sbjct 1189 GGGGTAGAAGAAAAAACACTGTTGTAAAATGCCGTAAGGCTCATTCTCGAAAAAAGGATG 1248
Query 1169 AAGCTGATGGGAGTCGGAAGGAGGCGAGCAAGAGCAATACTCCACCACGTTCTGAGAGCA 1228
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1249 AAGCTGATTGGAGTCGGAAGGAGGCGAGCAAGAGCAATACTCCACCACGTTCTGAAAGCA 1308
Query 1229 CGGGAACTGGCAAAAGATCTTCATTTTCAGACAAAAAAGGAAGTTCCCAAGACCTTCATC 1288
| | |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct 1309 CAGAAACTGGCAAAAGATCTTCATCTTCAGACAAAAAGGGAAGTTCCCATGACCTTCATC 1368
Query 1289 CACAGAGCAAAGCCCGGAAACAGAAACCAGATATTAGCACAAGGGAAGGAGATTTTCATC 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 CACAGAGCAAAGCCCGGAAACAGAAACCAGATATTAGCACAAGGGAAGGAGATTTTCATC 1428
Query 1349 CATCGCCAGAAGCTGAGACAGCAGCTATGACAGAGATGTTCCAGGGATTATCTAACAATG 1408
||||||||||||||||| |||||||| || ||||||||| ||||||||||||||| ||||
Sbjct 1429 CATCGCCAGAAGCTGAGGCAGCAGCTCTGCCAGAGATGTCCCAGGGATTATCTAAAAATG 1488
Query 1409 GCGAGAAACATGAAAGACCGAGTAATATTTTCATGGAAAAGTCTGTTGAGCCAGAAAACG 1468
|||| ||||||||| | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1489 GCGATAAACATGAACGGCCGAGTAATATTTTCAGGGAAAAGTCTGTTGAGCCAGAAAACG 1548
Query 1469 AATTCCAGAGTCCAACCTTTGGATATAAGGCACCAATCTCAAGTCCTTCCCCATGTTTTT 1528
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1549 AATTCCAGAGTCCAACCTTTGGATATAAAGCACCAATCTCAAGTCCTTCCCCATGTTGTT 1608
Query 1529 CTCCAGAAGCATCTCCTTTGCAACCTCGGAATATTAGTCCCACTTTAGAAGAGATGGAAA 1588
|||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||
Sbjct 1609 CTCCAGAAGCATCTCCTTTGCAACCTAGGAATATTAGTCCCACATTAGATGAGACGGAAA 1668
Query 1589 CACCAATATTTAGCTTCGGTACTAAGAAAAATTCTCAAGGGCCAACAGGCCAAGCGTCAA 1648
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1669 CACCAATATTTAGCTTCGGTACTAAGAAAACCTCTCAAGGGACAACAGGCCAAGCGTCAG 1728
Query 1649 ATACAGAAAGGAGATTGCCTGAATTCCTGGAGAAGAAAAGAGATTATTCTTTCAGAAGAG 1708
||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1729 ATACAGAAAAGAGATTGCCTGATTTCTTGGAGAAGAAAAGAGATTATTCTTTCAGAAGAG 1788
Query 1709 AAAGTTCTCCTGAGCCAAAAGAAGATTTAGTTCTGTCAGATTCATCGTCTGATGAGAGAG 1768
||||||||||||||||||| ||||||||||||||||| ||| | |||||||||||| |||
Sbjct 1789 AAAGTTCTCCTGAGCCAAATGAAGATTTAGTTCTGTCTGATCCGTCGTCTGATGAGCGAG 1848
Query 1769 ACTCAGATGGTTCAGGAGAAGATTCACCAGTGTTAGGCCATAACAACAGCCCTGAAGAAA 1828
|||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1849 ACTCAGATGGTTCAAGAGAAGATTCACCAGTGTTAGGCCATAACATCAGCCCCGAAGAAA 1908
Query 1829 GAAAAACTGCCAATTGGAGTAATGAGAAATCTAAGTTAGGCTCTAGCTCAGCTAAACGGA 1888
|| ||||||||||||||| |||||||| ||||| ||||||| ||||||||| ||||||||
Sbjct 1909 GAGAAACTGCCAATTGGACTAATGAGAGATCTATGTTAGGCCCTAGCTCAGTTAAACGGA 1968
Query 1889 ACTCTAACCTTAAGGGCATTGGACGTGTCGTGTTAAGTCCTCCCTCCTCTTTGTCCAAAG 1948
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1969 ACTCTAACCTTAAGGGCATTGGACGTGTCGTGTTAAGTCCTCCCTCCCCTTTGTCAAAAG 2028
Query 1949 GGATCGATAAAACTGATTCCTTCCAGCATTGTTCAGAGATGGATGAGGATGAAGATGAAG 2008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 GGATCGATAAAACTGATTCCTTCCAGCATTGTTCAGAGATGGATGAGGATGAAGATGAAG 2088
Query 2009 GCTTGGGAAGGGCTGTTGCATTGTTCGCTATGGCTCTTCAAAACATTGAGAAAAAACTGA 2068
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 2089 GCTTGGGAAGGGCTGTTGCATTGTTCGCTATGGCTCTTCAAAACTTTGAGAGAAAACTGA 2148
Query 2069 AATCTGCAGCTGAAAAGAAGTCCTCAGAAATTATAGCATCTGTATCCGAGGAGATACATC 2128
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2149 AATCTGCAGCTGAAAAGAAGTCCTCAGAAATTATAGCATCAGTCTCCGAGGAGATACATC 2208
Query 2129 TGGAGTTGGAGAATGTCAAGTCTCATATCATAACAGAAGCGGGAAAGACGAGTAACCTAG 2188
|||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 2209 TGGAGTTGGAGAATATCAAGTCCCATATCATAACAGAAGCGGGAAAGACAAGTAACCTAG 2268
Query 2189 CCAAAACTAAGAGAAAGCATGCCGAAACAAGATTACAAGAGCAACAAGAGAAAATGAGAA 2248
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2269 CCAAAACTAAGAGAAAGCATGCCGAAACAAGATTACAAGAGCAAGAAGAGAAAATGAGAA 2328
Query 2249 TGATCCATGAAAAGTTCAAGGACGATGTCAGCCATCATCTTGAAGATTTCAAGAGTACTA 2308
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2329 TGATCCATGAAAAGTTCAAGGACGATGTCAGCCATCATCTTGAAGATTTTAAGAGTACTA 2388
Query 2309 TTGAAGAGCTTGAAGGAAACCATTCAGAGTTGAAAGGAAGCATAAAGAAGCAAAGAACAT 2368
| ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 2389 TCGAAGAGCTTGAAGCAAACCAGTCAGAGCTGAAAGGAAGCATAAAGAAGCAAAGAACAT 2448
Query 2369 CACACCAAAAACTCATTGCACATTTTGAAGGAGGGATTGAGACAAAACTGGATAATGCGA 2428
|||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 2449 CACACCAAAAACTCATTGCACATTTTGAAGGAGGCATCGAGACAAAACTGGACGATGCGA 2508
Query 2429 CCAAAAGAATCGATTCT-T---C---T--GCGAGAGGAAAGATGCTGCAGCTGAAGATGA 2479
||||||||||||||||| | | | |||||||||||||||||||||||||||||||
Sbjct 2509 CCAAAAGAATCGATTCTGTAAACAAGTCTGCGAGAGGAAAGATGCTGCAGCTGAAGATGA 2568
Query 2480 TTGTCGCAGAATGTTTGAGGGATGATTGACACTGA--C--AT-G--T-AA---------- 2521
||||||||||||||||||||||||||||||||||| | | | | ||
Sbjct 2569 TTGTCGCAGAATGTTTGAGGGATGATTGACACTGAGTCTCACAGAATCAATCAACCACAC 2628
Query 2522 GT--G--GTTATTCTCCACCGAAAAACTTTAATTAGACGAGCTGTGTTAACCAGGaaaaa 2577
|| | ||||||||||| ||||| | || ||||||| ||||||||||||||||| |
Sbjct 2629 GTACGTCGTTATTCTCCATTTTAAAACATAAACTAGACGAACTGTGTTAACCAGGAAAGA 2688
Query 2578 aaaaaaGAACCTCAAGCAAAACCAGCCTTTGGTTTAGTGGTCTCATGTCATGAGTACAGG 2637
|||| | |||||||||||||||||||||||||||||||||||| | | | ||||
Sbjct 2689 AAAACCT--C-TCAAGCAAAACCAGCCTTTGGTTTAGTGGTCTCATG--A-GT-T-CAGG 2740
Query 2638 CGAAGGCGAATAAAGAAGATA--GTAGATGATGCTTTGACTCATTG--ATT----CGTAT 2689
|||| ||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 2741 CGAA------TAAAGAAGATATAGTAGATGATGCTTTGACTCATTGTCATTGATTCGTAT 2794
Query 2690 TCGTATAGAATAGTTTATAGTT 2711
|||||||||||||||||| |||
Sbjct 2795 TCGTATAGAATAGTTTATTGTT 2816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140166438742
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5