BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483878
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47050.1 | Symbols: | Plant invertase/pectin methylesterase... 1522 0.0
> AT2G47050.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr2:19331685-19332646 REVERSE
LENGTH=962
Length=962
Score = 1522 bits (824), Expect = 0.0
Identities = 917/958 (96%), Gaps = 22/958 (2%)
Strand=Plus/Plus
Query 1 AATCTATTCCTTTCCAATCCACGTCCaaaaaacaaaacc--------aaaaaaaaaaaga 52
|||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AATCCATTCCTTTCCAATCCACGTCCAAAAAACAAAACCAAAAAAAAAAAAAAAAAAAGA 60
Query 53 caaaaaaaaaaTGAACACTCCAATAAAACTCGCCTTTCTCATTCTCTGCATTGCCCTAAC 112
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 C-AAAAAAAAATGAACACTCCAATAAAACTCGCCTTTCTCATTCTCTGCATTGCCCTAAC 119
Query 113 CGCAACCGCATTTGTAGTCCCACCAAAACGTGACGCCGTTTCACCAAACCACCAAAAAGC 172
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 120 CGCAACCGCATTTATAGTCCCAGCAAAACGTGACGCCGTTTCACCACACCACCAAAAAGC 179
Query 173 CGTCGATGGAATCTGCAGCGTTGTGCAAGACAAACGTCTATGTAGCATTACCCTAAGAAA 232
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 180 CGTCGATGGAATCTGCAGCGTTGTGCAAGACAAACGTCTATGCAGCATTACCTTAAGAAA 239
Query 233 CGTCCCAAGCGATGATCCCGCCGTTTTGGTCCGTTACTTAGCCACGGCAGCAGAAGCGTC 292
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CGTCCCAAGCGATGATCCCGCCGTTTTGGTTCGTTACTTAGCCACGGCAGCAGAAGCGTC 299
Query 293 CGTTAAAAAGGGTTTGAAATTCCTCGCCGGAATCAAACCAAAATACAAAGGAAACGCCTT 352
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 CGTTAAAAAGGGTTTGAAGTTCCTCTCCGGAATCAAACCAAAATACAAAGGAAACGCCTT 359
Query 353 CGCCACAACATGCATCACCGGCTGCGAGAAACAGCTACACAACGCCTTAGACGACTTTGC 412
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 CGCCACAACATGCATCACCGGCTGCGAGAAACAGCTACACAACGCCTTGGACGACTTTGC 419
Query 413 AGATTTCTGGAAAGCCGCAGGAAAAAACCTAACGAGCATGGCTGAGAATTACTTCACATG 472
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 AGATTTCTGGAAAGCCGCAGGAAAAAATCTAACGAGCATGGCTGAGAATTACTTCACATG 479
Query 473 TAAGAAGAAGATGACTTCCATCTTCACTTACCATTCCACTTGTCTCGATGACATTTACGA 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TAAGAAGAAGATGACTTCCATCTTCACTTACCATTCCACTTGTCTCGATGACATTTACGA 539
Query 533 CAAGACGTTGCACAAGGTGGTCGAAGGAGGAATTGGGCTTGGGAAAAGAATGAGTGGTGA 592
||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 540 CAAGACGTTGCACAAAGTGGTCGAAGGAGGGATTGGCCTTGGGAAAAGAATGAGTGGTGA 599
Query 593 GTCTGTGGATGTGTTCGCTGGAATGGGCAAAGTCTTTAACACTTTCAACATTAAGACCAA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTCTGTGGATGTGTTCGCTGGAATGGGCAAAGTCTTTAACACTTTCAACATTAAGACCAA 659
Query 653 ACTTAACCAGAAAGATACCGACACGTTGCTCCCACCGCCTTTGTCCTTTTACTACTATTG 712
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 ACTTAACCAGAAAGATACCGACACGTTGCTCCCACCACCTTTGTCCTTTTACTACTATTG 719
Query 713 ATTTTATTTATCAatatatattatatat-a-AAA-----------TGTACTGCTTCGGTC 759
|||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 720 ATTTTATTTATCAATATATATTATATATCATAAAACACAACAAAATGTACTGCTTCGGTC 779
Query 760 GATGGTGATGAATAATTTGCATCGATTGGGTTTTCAGATATTTTGGGGATCTTGTAACCA 819
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GATGGTGATGAATAATTTTCATCGATTGGGTTTTCAGATATTTTGGGGATCTTGTAACCA 839
Query 820 AAGGTTCCTTTTGATGTATGTTTGTAATTAATATGTTATGGATTATAATCATGTATGGAC 879
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 AAGGTTCCTTTTGATGTATGTTTGTATTTAATATGTTATGGATTATAATCATGTATGGAC 899
Query 880 CTCGTGATTGGAAAGGATATGGAATAATGTGATTATCCAGTAATAAAAACGTAATTAA 937
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 900 CTCGTGATTGGAAAGGATATGGAATAATGTGATTATCTAATAATAAAAACGTAATTAA 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45863776211
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5