BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483882
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47060.4 | Symbols: | Protein kinase superfamily protein | ... 1439 0.0
AT3G62220.1 | Symbols: | Protein kinase superfamily protein | ... 928 0.0
AT3G17410.1 | Symbols: | Protein kinase superfamily protein | ... 488 5e-137
> AT2G47060.4 | Symbols: | Protein kinase superfamily protein
| chr2:19332904-19334971 REVERSE LENGTH=1500
Length=1500
Score = 1439 bits (779), Expect = 0.0
Identities = 915/977 (94%), Gaps = 24/977 (2%)
Strand=Plus/Plus
Query 48 AAAG-AAATGAGTTGCTTCAGCTGTTGT---GAGGATGATGATATGCATAAAACTGCTGA 103
|||| ||||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 88 AAAGAAAATGAGTTGCTTTGGGTGTTGTGGGGAGGATGATGATATGCATAAAACTGCTGA 147
Query 104 TTATGGA-G--GTCATAACCCAGCCAAACAC-TT--TCCAGGGAATGATGCAAGGCACCA 157
||||||| | ||||||||| |||||||||| || |||||| |||||||||||||||||
Sbjct 148 TTATGGAGGTCGTCATAACCAAGCCAAACACTTTCCTCCAGGAAATGATGCAAGGCACCA 207
Query 158 CCAAGCCTCTGAAACT-C-C---A--GTTGTGAAG--GTGCA---GCAGCCTATCGAAGT 205
|||||||||||||||| | | | || | || ||| | ||||||||| |||||
Sbjct 208 CCAAGCCTCTGAAACTGCACAGAAGGGTCCTCCAGTTGTGAAGTTGCAGCCTATTGAAGT 267
Query 206 ACCTACTATCCCTTTTAGTGAACTCAAGGAAGCAACTGATGATTTTGGATCCAATTCTCT 265
||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 268 ACCTATTATCCCTTTTAGTGAACTCAAAGAAGCAACTGATGATTTTGGATCGAATTCTCT 327
Query 266 CATCGGTGAAGGCTCTTATGGCAGAGTATATTACGGAGTTTTGAACAACGATCTGCCTTC 325
||||||||||||||||||||| |||||||| ||||| || || ||||| |||||||||||
Sbjct 328 CATCGGTGAAGGCTCTTATGGAAGAGTATACTACGGGGTATTAAACAATGATCTGCCTTC 387
Query 326 TGCGATTAAAAAGTTGGATTCTAACAAACAGCCTGACACTGAATTCCTTGCCCAGGTTTC 385
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 388 AGCGATTAAAAAGTTGGATTCTAACAAACAGCCTGACAATGAATTCCTTGCTCAGGTTTC 447
Query 386 CATGGTTTCTAGGCTTAAACATGATAACTTTGTTCAACTTCTTGGCTACTGTGTTGACGG 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 448 CATGGTTTCTAGGCTTAAACATGATAACTTTGTTCAACTTCTTGGCTACTGTGTTGATGG 507
Query 446 GAATTCACGGATACTTGCCTT-TGAATTTGCCAAAAATGGATCTCTTCATGATATTCTTC 504
|||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||
Sbjct 508 GAATTCACGGATACTT-TCTTATGAATTTGCCAATAATGGATCTCTTCATGATATTCTTC 566
Query 505 ATGGGAGAAAAGGTGTGAAAGGAGCACAGCCAGGTCCTGTCTTGTCGTGGTATCAACGAG 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 ATGGGAGAAAAGGTGTGAAAGGAGCACAGCCAGGTCCTGTCTTGTCGTGGTATCAACGAG 626
Query 565 TGAAAATTGCAGTTGGAGCTGCAAGAGGCCTTGAGTACTTGCATGAAAAAGCTAATCCTC 624
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TCAAAATTGCAGTTGGAGCTGCAAGAGGCCTTGAGTACTTGCATGAAAAAGCTAATCCTC 686
Query 625 ACATCATTCACCGTGACATCAAATCCAGCAATGTCCTACTCTTTGAAGACGATGTTGCCA 684
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 687 ACATCATTCACCGTGACATTAAATCCAGCAATGTCCTCCTCTTTGAAGATGATGTTGCCA 746
Query 685 AAATTGCTGACTTTGATCTCTCTAATCAAGCTCCTGATATGGCAGCTCGCCTTCATTCCA 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 AAATTGCTGACTTTGATCTCTCTAATCAAGCTCCTGATATGGCAGCTCGCCTTCATTCCA 806
Query 745 CCCGTGTTCTTGGAACTTTCGGTTACCATGCCCCTGAATATGCAATGACCGGGCAGTTAA 804
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 807 CCCGAGTTCTTGGGACTTTTGGTTACCATGCCCCTGAATATGCAATGACCGGGCAGTTAA 866
Query 805 ATGCCAAGAGTGATGTCTACAGCTTTGGAGTTGTCTTACTCGAACTTCTTACAGGTCGAA 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 ATGCCAAGAGTGATGTCTACAGCTTTGGAGTTGTCTTACTCGAACTTCTTACAGGTCGAA 926
Query 865 AACCTGTTGATCATAGATTACCCAGAGGCCAGCAAAGTTTAGTCACATGGGCTACACCTA 924
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 AGCCTGTTGATCATAGACTACCCAGAGGCCAGCAAAGTTTAGTCACATGGGCTACACCTA 986
Query 925 AACTGAGCGAAGACAAGGTTAAACAATGCGTTGATGCAAGACTCGGTGGGGATTACCCTC 984
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 987 AACTGAGTGAAGACAAGGTTAAACAATGCGTTGATGCAAGACTCGGTGGCGATTACCCTC 1046
Query 985 CAAAAGCTGTTGCCAAG 1001
||||||||||||| |||
Sbjct 1047 CAAAAGCTGTTGCTAAG 1063
Score = 294 bits (159), Expect = 1e-78
Identities = 171/177 (97%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 1000 AGTTAGCCGCGGTTGCTGCGTTGTGTGTGCAATATGAAGCAGATTTTAGGCCGAATATGA 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 AGTTAGCCGCGGTTGCTGCGTTGTGTGTGCAATATGAAGCAGATTTTAGGCCGAATATGA 1217
Query 1060 GTATCGTTGTCAAAGCTCTTCAACCTTTGTTGAATGCTCGAGCCGTAGCTCCAGGCGAAG 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1218 GTATCGTTGTCAAAGCTCTTCAACCTTTGTTGAATGCTCGAGCCGTAGCTCCAGGGGAAG 1277
Query 1120 AAGTACATTAGCAACCGCTGTCTCGGCGTTTCTCTTCTTACCGGAAAATTTCATTTT 1176
||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct 1278 GAGTACATTAGCCACCTCTGTCTCGGCGTTTCTCTTCTTACCAGAAAATTTGATTTT 1334
Score = 110 bits (59), Expect = 5e-23
Identities = 63/65 (97%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1214 TTTACATTAAATCCGTTACCCTTATTATTTGGACTCTTGTTTACTTCACAATTAACAAGA 1273
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1413 TTTACATTAAATCCGTTACCCTTATTATTTGGACTCTTGTTTAATTCACAATTAACCAGA 1472
Query 1274 ATCAT 1278
|||||
Sbjct 1473 ATCAT 1477
> AT3G62220.1 | Symbols: | Protein kinase superfamily protein
| chr3:23029100-23031155 REVERSE LENGTH=1367
Length=1367
Score = 928 bits (502), Expect = 0.0
Identities = 809/955 (85%), Gaps = 30/955 (3%)
Strand=Plus/Plus
Query 191 GCAGCCTATCGAAGTACCTACTA-TCCCTTTTAGTGAACTCAAGGAAGCAACTG-ATGAT 248
||||||||| |||||| || ||| || | | | |||||| | |||||||| | |||||
Sbjct 252 GCAGCCTATAGAAGTAGCTGCTATTCTCGCTGA-TGAACTGATTGAAGCAAC-GAATGAT 309
Query 249 TTTGGATCCAATTCTCTCATCGGTGAAGGCTCTTATGGC-AGAGTATATTACGGAGTTTT 307
|||||| | |||||||| |||||||||||||| ||| || ||||| ||| |||| || ||
Sbjct 310 TTTGGAACTAATTCTCTTATCGGTGAAGGCTCGTAT-GCGAGAGTGTATCACGGGGTGTT 368
Query 308 GAACAACGATCTGCCTTCTGCGATTAAAAAGTTGGATTCTAACAAACAGCCTGACACTG- 366
|| || | || || | | || ||||||||||| |||||||||||||||||| | | ||
Sbjct 369 AAAGAATGGTCAGCGTGCAGCCATTAAAAAGTTAGATTCTAACAAACAGCCT-A-A-TGA 425
Query 367 A-A-TTCCTTGCCCAGGTTTCCATGGTTTCTAGGCTT-AAACATGATAACTTTGTTCAAC 423
| | || || || ||||||||||||||||| ||| || || |||| |||||||||| | |
Sbjct 426 AGAGTTTCTAGCACAGGTTTCCATGGTTTCGAGG-TTGAAGCATGTTAACTTTGTTGAGC 484
Query 424 TTCTTGGCTACTGTGTTGACGGGAATTC-ACGGATACTTGCCTTTGAATTTGCCAAAAAT 482
| ||||| |||| |||||| |||||||| | ||||||||| |||||| |||||| |||||
Sbjct 485 TGCTTGGTTACTCTGTTGATGGGAATTCGA-GGATACTTGTCTTTGAGTTTGCCCAAAAT 543
Query 483 GGATCTCTTCATGATATTCTTCATGGGAGAAAAGGTGTGAAAGGAGCACAGCCAGGTCCT 542
||||||||||||||||||||||| ||||||||||||||||| |||||| |||| |||||
Sbjct 544 GGATCTCTTCATGATATTCTTCACGGGAGAAAAGGTGTGAAGGGAGCAAAGCCTGGTCCA 603
Query 543 GTCTTGTCGTGGTATCAACGAGTGAAAATTGCAGTTGGAGCTGCAAGAGGCCTTGAGTAC 602
||||||||||| ||||||||||||| ||||| |||||||| |||||||| ||||||||
Sbjct 604 CTCTTGTCGTGGCATCAACGAGTGAAGATTGCTGTTGGAGCAGCAAGAGGGCTTGAGTAT 663
Query 603 TTGCATGAAAAAGCTAATCCTCACATCATTCACCGTGACATCAAATCCAGCAATGTCCTA 662
|| |||||||| || ||||| || |||| ||||||||||| |||||||||||||| |||
Sbjct 664 TTACATGAAAAGGCAAATCCACATGTCATCCACCGTGACATAAAATCCAGCAATGTTCTA 723
Query 663 CTCTTTGA-AGACGATGTTGCCAAAATTGCTGACTTTGATCTCTCTAATCAAGCTCCTGA 721
||||||| | ||||||| ||||| || ||||||||||||||||| ||||||||||||||
Sbjct 724 ATCTTTGATA-ACGATGTAGCCAAGATAGCTGACTTTGATCTCTCAAATCAAGCTCCTGA 782
Query 722 TATGGCAGCTCGCCTTCATTCCACCCGTGTTCTTGGAAC-TTTCGGTTACCATGCCCCTG 780
||||||||| ||||||||||| || |||||||||||||| ||| ||||||||||||||||
Sbjct 783 TATGGCAGCACGCCTTCATTCAACTCGTGTTCTTGGAACCTTT-GGTTACCATGCCCCTG 841
Query 781 AATATGCAATGACCGGGCAGTTAAATGCCAAGAGTGATGTCTACAGCTTT-GGAGTTGT- 838
||||||||||||| ||||| || | |||||||||||| || ||||| ||| ||||||||
Sbjct 842 AATATGCAATGACTGGGCAATTGAGTGCCAAGAGTGACGTATACAG-TTTCGGAGTTGTA 900
Query 839 CTTACTCGAACTTCTTACAGGTCGAAAACCTGTTGATCATAGATTACC-CAGAGGCCAGC 897
|| ||||| ||||||||||||||||| ||||||||||||| ||| || | |||||||||
Sbjct 901 CTG-CTCGAGCTTCTTACAGGTCGAAAGCCTGTTGATCATACATTGCCTC-GAGGCCAGC 958
Query 898 AAAGTTTAGTCACATGGGCTACACCTAAA-CTGAGCGAAGACAAGGTTAAACAATGCGTT 956
||||| ||||||||||||||||||| ||| || ||||||||||||||||| || || |||
Sbjct 959 AAAGTCTAGTCACATGGGCTACACC-AAAGCTAAGCGAAGACAAGGTTAAGCAGTGTGTT 1017
Query 957 GATGCAAGACTCGGTGGGGATTACCCTCCAAAAGCTGTTGCCAAGTTAGCCGCGGTTGCT 1016
||| ||||||| || || ||||||||||||||||||||||| |||||||| || ||||||
Sbjct 1018 GATTCAAGACTGGGAGGAGATTACCCTCCAAAAGCTGTTGCTAAGTTAGCTGCTGTTGCT 1077
Query 1017 GCGTTGTGTGTGCAATATGAAGCAGATTTTAGGCCGAATATGAGTATCGTTGTCAAAGCT 1076
|| |||||||| ||||| ||||| ||||| || || || |||||||| || || || |||
Sbjct 1078 GCATTGTGTGTACAATACGAAGCTGATTTCAGACCAAACATGAGTATTGTCGTGAAGGCT 1137
Query 1077 CTTCAACCTTTGTTGAATGCTCG-AGCCGTAGCTCCAGGCGAAGAAGTACATTAG 1130
|| ||||| |||||||||||||| | ||| | || |||| |||| || || ||||
Sbjct 1138 CTGCAACCATTGTTGAATGCTCGGA-CCGGACCTGCAGGAGAAGGAGCACCTTAG 1191
> AT3G17410.1 | Symbols: | Protein kinase superfamily protein
| chr3:5955909-5959106 FORWARD LENGTH=1480
Length=1480
Score = 488 bits (264), Expect = 5e-137
Identities = 621/791 (79%), Gaps = 34/791 (4%)
Strand=Plus/Plus
Query 325 CTGCGATTAA-AAAGTTGGATTCTAACAAACAGCCTGA-CACTGAATTCCTTGCCCAGGT 382
|||| ||||| ||| ||||||||| || || || || || ||||| || ||||||||
Sbjct 442 CTGCCATTAAGAAA-CTGGATTCTAGTAAGCAACCAGATCA-AGAATTTCTCGCCCAGGT 499
Query 383 TTCCATGGTTTCTAGGCTT-AAACATGATAACT-TTGTT-CAACTTCTTGGCTACTGTGT 439
|| |||||||| | | || ||| || || | ||||| | ||||| ||||| |||||
Sbjct 500 ATCAATGGTTTCGA-GATTGCGACAAGA-AAATGTTGTTGC-GCTTCTGGGCTATTGTGT 556
Query 440 TGACGG-GAATTCACG-GATACTTGCCTT-TGAATTTGC-CAAAAATGGATCTCTTCATG 495
||| || | || || | | |||| ||| ||||| ||| | ||||||||||||||||
Sbjct 557 TGATGGCCCACTC-CGTG-TTCTTG-CTTATGAATATGCTC-CTAATGGATCTCTTCATG 612
Query 496 ATATTCTTCATGGGAGAAAAGGTGTGAAAGGAGCACAGCCAGGTCCTGT-CTTGTCGTGG 554
||||||||||||| |||||||||| ||||| ||||||||||||||||| || |||||||
Sbjct 613 ATATTCTTCATGGTCGAAAAGGTGTTAAAGGGGCACAGCCAGGTCCTGTTCT-GTCGTGG 671
Query 555 TATCA-ACGAGTGAAAATTGCAGTTGGAGCTGCAAGAGGCCTTGAGTACTTGCATGAAAA 613
| || | |||| |||||||| ||||| || || ||||| || |||||||||||||| ||
Sbjct 672 CACCAGA-GAGTCAAAATTGCTGTTGGTGCGGCTAGAGGACTCGAGTACTTGCATGAGAA 730
Query 614 AGCTAATCCTCACATCATTCACCGTGACATCAAATCCAGCAATGTCCTACTCTTTGAAGA 673
|| || ||||| | || ||| | |||||||||||||||||||| || || || || ||
Sbjct 731 GGCAAACCCTCATGTTATCCACAGAGACATCAAATCCAGCAATGTACTTCTGTTCGATGA 790
Query 674 CGATGTTGCCAAAATTGCTGACTTTGATCTCTCTAATCAAGCTCCTGATATGGCAGCTCG 733
||||||||||| |||||||| |||||| | || || ||||| ||||| ||||| |||||
Sbjct 791 TGATGTTGCCAAGATTGCTGATTTTGATTTGTCCAACCAAGCCCCTGACATGGCTGCTCG 850
Query 734 CCTTCATTCCACCCGTGTTCTTGGAAC-TTTCGGTTACCATGCCCCTGAATATGCAATGA 792
|||||| || |||||||| || ||||| ||| || || || || || || ||||||||||
Sbjct 851 CCTTCACTCAACCCGTGTGCTCGGAACCTTT-GGCTATCACGCTCCAGAGTATGCAATGA 909
Query 793 CCGGG-CAGTTAAATGC-CAA-GAGTGATGTCTACAGCTTTGGAGTTGT-CTTACTCGAA 848
| ||| | ||| | || ||| |||||||||||| || ||||| ||||| || || ||
Sbjct 910 CGGGGAC-GTTGA--GCACAAAGAGTGATGTCTATAGTTTTGGCGTTGTTCTG-CTGGAG 965
Query 849 CTTCTTACAGGTCGAAAACCTGTTGATCATAGATTACC-CAGAGGCCAGCAAAGTTTAGT 907
|| || |||||||| ||||| |||||||||| ||||| | | || ||||| ||| | ||
Sbjct 966 CTCCTCACAGGTCGTAAACCAGTTGATCATACCTTACCAC-GTGGACAGCAGAGTGTCGT 1024
Query 908 CACATGGGCTACACCTAAACTGAGCGAAGACAAGGTTAAACAATGCGTTGATGCAAGACT 967
|||||||| || |||||| |||| ||||||||||| || || || ||||| ||||||||
Sbjct 1025 GACATGGGCAACCCCTAAATTGAGTGAAGACAAGGTGAAGCAGTGTGTTGACGCAAGACT 1084
Query 968 CGGTGGGGATTACCCTCCAAAAGCTGTTGCCAAGTTAGCCGCGGTTGCTGCGTTGTGTGT 1027
|| || || ||||| ||||||||||| ||| | || ||||| ||||| |||||||
Sbjct 1085 AAACGGAGAATATCCTCCCAAAGCTGTTGCTAAGCTGGCTGCGGTAGCTGCACTGTGTGT 1144
Query 1028 GCAATATGAAGCAGATTTTAGGCCGAATATGAGTATCGTTGTCAAAGCTCTTCAACCTTT 1087
||||||||| ||||| || ||||| || ||||| || || || || |||||||| || ||
Sbjct 1145 GCAATATGAGGCAGACTTCAGGCCTAACATGAGCATAGTGGTGAAGGCTCTTCAGCCGTT 1204
Query 1088 GTTGAATGCTC 1098
| | ||| |||
Sbjct 1205 GCTCAATCCTC 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5