BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483890
Length=492
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47150.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 562 1e-159
AT2G47130.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 246 1e-64
AT2G47120.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 211 5e-54
> AT2G47150.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr2:19352324-19353114 REVERSE LENGTH=603
Length=603
Score = 562 bits (304), Expect = 1e-159
Identities = 395/435 (91%), Gaps = 21/435 (5%)
Strand=Plus/Plus
Query 5 TGGATGGCAAAATCGTGATTATAATAGGCGGG-GCCAGTGGGATAGGAGCCGAATCCGCG 63
|||||||||||||||||||||||| ||| ||| |||||||||| |||||||||||||||
Sbjct 2 TGGATGGCAAAATCGTGATTATAACAGG-GGGAGCCAGTGGGACAGGAGCCGAATCCGCT 60
Query 64 AGGTTGTTCACTGACCACGGAGCTAAAGTGGTTATAGTTGACGTACAAGAAGAGCTAGGC 123
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||
Sbjct 61 AGGTTGTTCACTGACCACGGAGCTCAAGTGGTTGTAGTTGACTTACAAGAAGAGCAAGG- 119
Query 124 CAAAACGTGGCCGTTTCAATCGGCAAAGATAAAGCAAGTTTTTACCGTTGTGATGTTACA 183
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 120 CAAAACGTCGCCGTTTCAATCGGCAAAGACAGAGCAAGTTTTTACCGTTGTGATGTTACA 179
Query 184 AACGAGACGGAAGTAGAGAACGCCGTTAACAAACCCGGCGTCTTGGAAACGCCGGGAAGC 243
|||||||| | ||| | | ||||||||||||||||||| |||||||||
Sbjct 180 AACGAGAC-------G-GAA---C-----C-AACCCGGCGTCTTGGAAACACCGGGAAGC 222
Query 244 ATCCTTGATTTGAATCTTGAACGGTTTGACCGAACAATGGCGGTCAACGTTCGTGGAGCG 303
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 223 ATCCTTGATTTGAATCTTGAACGGTTTCACCGAACAATGGCTGTCAACGTTCGTGGAGCG 282
Query 304 GCTGTGTTTATCAAACATGCGGCACGAGCCATGGTGGAGAAAGGCACGCGTGGCTCCATC 363
||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 283 GCTGTGTCTATCAAACACGCCGCACGAGCCATGGTGGAGAAAGGCACACGTGGCTCCATC 342
Query 364 GTTTGTACGACCAGCGTTACGTCGGAGATCGGTGGTCAGGGACCTCATGAATACACGACG 423
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 343 GTTTGTACGACCAGTGTTACGTCGGAGATCG-TGGTCAGGGACCTCATGAATACACGGCG 401
Query 424 TCGAAGCATGGGCTC 438
|||||||||||||||
Sbjct 402 TCGAAGCATGGGCTC 416
> AT2G47130.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr2:19349536-19350539 REVERSE LENGTH=923
Length=923
Score = 246 bits (133), Expect = 1e-64
Identities = 193/221 (87%), Gaps = 7/221 (3%)
Strand=Plus/Plus
Query 215 AAC-CCGGCGTCT-TGGAAAC-GCCGGGAAGCATCCTTGATTTGAATCTTGAACGGTTTG 271
||| ||||||| | ||| ||| |||||||||| | || || |||||||| |||| |||||
Sbjct 326 AACGCCGGCGT-TATGG-AACAGCCGGGAAGCTTTCTCGACTTGAATCTGGAACAGTTTG 383
Query 272 ACCGAACAATGGCGGTCAACGTTCGTGGAGCGGCTGTGTTTATCAAACATGCGGCACGAG 331
||||||| |||||||||||||||||||| ||||||| |||||||||||| || |||||||
Sbjct 384 ACCGAACCATGGCGGTCAACGTTCGTGGTGCGGCTGCGTTTATCAAACACGCTGCACGAG 443
Query 332 CCATGGTGGAGAAAGGCACGCGTGGCTCCATCGTTTGTACGACCAGCGTTACGTCGGAGA 391
||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||
Sbjct 444 CCATGGTGGAGAAAGGCACGCGTGGGTCAATCGTATGTACGACCAGCGTCGCGTCGGAGA 503
Query 392 TCGGTGGTC-AGGGACCTCATGAATACACGACGTCGAAGCA 431
||||||||| ||| |||||| | |||||| |||| |||||
Sbjct 504 TCGGTGGTCCAGG-ACCTCACGCGTACACGGCGTCTAAGCA 543
> AT2G47120.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr2:19347359-19348238 REVERSE LENGTH=792
Length=792
Score = 211 bits (114), Expect = 5e-54
Identities = 190/226 (84%), Gaps = 8/226 (4%)
Strand=Plus/Plus
Query 215 AAC-CCGGCGTCTTGGAAACGCCGGGAAGCATCCTTGA-TTTGAATCTTGAACGGTTTGA 272
||| |||| ||||||||| | | || |||| |||| || |||| | || |||||||||||
Sbjct 283 AACGCCGGAGTCTTGGAACCACTGGAAAGCTTCCTCGACTTTG-ACCTCGAACGGTTTGA 341
Query 273 CCGAACAATGGCGGTCAACGTTCGTGGAGCGGCTGTGTTTATCAAACATGCGGCACGAGC 332
||| | |||||| || |||||||| || || |||| |||||||||||| |||||||||||
Sbjct 342 CCGCATAATGGCTGTTAACGTTCGCGGTGCAGCTGCGTTTATCAAACACGCGGCACGAGC 401
Query 333 CATGGTGGAGAAAGGCACGCGTGGCTCCATCGTTTGTACGACCAGCGT-TACGTCGGAGA 391
|||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||
Sbjct 402 CATGGTGGAGAAAGGCACGCGTGGCTCCATCGTTTGTACGACGAGCGTCT-CGGCGGAGA 460
Query 392 TCGGTGGTCAGGGACCTCATGAATACACGACGTCGAAGCATGGGCT 437
||||||| ||| | ||||| |||||| |||| || || |||||
Sbjct 461 TCGGTGGG--GGG-CATCATGGTTACACGGCGTCTAAACACGGGCT 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23459346649
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5