BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483893
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47170.1 | Symbols: ARF1A1C | Ras-related small GTP-binding ... 1323 0.0
AT3G62290.1 | Symbols: ATARFA1E, ARFA1E | ADP-ribosylation fact... 728 0.0
> AT2G47170.1 | Symbols: ARF1A1C | Ras-related small GTP-binding
family protein | chr2:19366623-19368840 FORWARD LENGTH=1036
Length=1036
Score = 1323 bits (716), Expect = 0.0
Identities = 803/843 (95%), Gaps = 13/843 (2%)
Strand=Plus/Plus
Query 1 TATTTTTAACGCTCACTGGATTTATAAGTAGAGATTTTTTGTGTCTCAC-AAAAC--AAA 57
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1 TATTTTTAACGCTCACTGGATTTATAAGTAGAGATTTTTTGTGTCTCACAAAAACAAAAA 60
Query 58 AATCATCGTGAAACGTTCGAAGGCCA-TTTCTTTGGACGGACCATCGGCGTTAAGGAGAG 116
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 61 AATCATCGTGAAACGTTCGAAGGCCATTTTCTTTGGAC-GACCATCGGCGTTAAGGAGAG 119
Query 117 AGCTTAGATCTCGTGCGGCGTAGTTTCTCCG--GTGAACAGGCTTGA-AAAAATGGGGTT 173
|||||||||||||||| ||| | | | || || | ||||||| |||||||||||
Sbjct 120 AGCTTAGATCTCGTGC--CGTCG-TGCGACGTTGTTTTCCGGCTTGATCAAAATGGGGTT 176
Query 174 GTCATTCGGAAAGTTGTTCAGCAAGCTCTTTGCGAAGAAAGAGATGCGTATTCTGATGGT 233
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 177 GTCATTCGGAAAGTTGTTCAGCAGGCTCTTTGCGAAGAAAGAGATGCGTATTCTGATGGT 236
Query 234 TGGTCTCGATGCTGCTGGTAAGACGACTATCCTGTACAAGCTCAAACTTGGAGAGATCGT 293
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 237 TGGTCTCGATGCTGCTGGTAAGACGACTATCCTCTACAAGCTCAAACTTGGAGAGATCGT 296
Query 294 CACCACTATTCCAACCATTGGGTTCAATGTTGAGACTGTTGAATACAAGAACATTAGCTT 353
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 297 CACCACTATTCCAACCATTGGGTTCAACGTTGAGACTGTTGAATACAAGAACATCAGCTT 356
Query 354 TACCGTGTGGGATGTCGGGGGTCAAGACAAGATCCGTCCATTGTGGAGACATTACTTCCA 413
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CACCGTGTGGGATGTTGGGGGTCAAGACAAGATCCGTCCATTGTGGAGACATTACTTCCA 416
Query 414 GAACACACAGGGACTTATCTTTGTTGTGGACAGCAATGATCGTGACCGTGTTGTTGAAGC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GAACACACAGGGACTTATCTTTGTTGTGGACAGCAATGATCGTGACCGTGTTGTTGAAGC 476
Query 474 CAGGGACGAGCTTCACAGGATGCTGAATGAGGATGAATTGAGGGATGCAGTTCTGCTTGT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CAGGGACGAGCTTCACAGGATGCTGAATGAGGATGAATTGAGGGATGCAGTTCTGCTTGT 536
Query 534 ATTTGCTAACAAACAAGATCTTCCCAACGCGATGAACGCTGCTGAGATAACTGACAAGCT 593
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ATTTGCTAACAAGCAAGATCTTCCCAACGCGATGAACGCTGCTGAGATAACTGACAAGCT 596
Query 594 TGGGCTTCACTCTCTTCGCCAACGACACTGGTACATTCAGAGCACATGTGCCACCTCAGG 653
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 597 TGGGCTTCATTCTCTTCGTCAACGACACTGGTACATTCAGAGCACATGTGCCACCTCTGG 656
Query 654 AGAAGGGCTCTATGAGGGACTTGACTGGCTCTCCAACAACATCGCAAACAAGGCATAGAT 713
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 657 AGAAGGACTCTATGAGGGACTTGACTGGCTCTCCAACAACATCGCAAGCAAGGCATAGAT 716
Query 714 GGGAA-GTTAGCCAGATTCCTCTTTTACTTGTTTGGTTTATAAATCAAAGAAAGAGGTCT 772
|| || |||||||||||||||||| | ||||||||||||| |||||||||| ||||||||
Sbjct 717 GG-AATGTTAGCCAGATTCCTCTTCTGCTTGTTTGGTTTACAAATCAAAGACAGAGGTCT 775
Query 773 GTTTCGCTAGTACTAAAAGATTTATTATTATATTCTTCTTCGTCGCTTATCTCAAACGCA 832
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 776 GTTTCTCTAGTACTAAAAGATTTATTATTATATTCTTCTTCGTCACTTATCTCAAACGCA 835
Query 833 GAT 835
|||
Sbjct 836 GAT 838
> AT3G62290.1 | Symbols: ATARFA1E, ARFA1E | ADP-ribosylation factor
A1E | chr3:23051650-23053757 FORWARD LENGTH=867
Length=867
Score = 728 bits (394), Expect = 0.0
Identities = 504/558 (90%), Gaps = 3/558 (1%)
Strand=Plus/Plus
Query 155 GGCTTGAAAAAATGGGGT-TGTCATTCGGAAAGTTGTTCAGCAAGCTCTTTGCGAAGAAA 213
|||||| |||||| |||| | || ||||||||||||||||||||||||||||| ||||||
Sbjct 100 GGCTTG-AAAAAT-GGGTCTATCCTTCGGAAAGTTGTTCAGCAAGCTCTTTGCAAAGAAA 157
Query 214 GAGATGCGTATTCTGATGGTTGGTCTCGATGCTGCTGGTAAGACGACTATCCTGTACAAG 273
||||||||||| || ||||| ||||||||||| ||||||||||| || ||| ||||||||
Sbjct 158 GAGATGCGTATCCTCATGGTGGGTCTCGATGCAGCTGGTAAGACTACGATCTTGTACAAG 217
Query 274 CTCAAACTTGGAGAGATCGTCACCACTATTCCAACCATTGGGTTCAATGTTGAGACTGTT 333
||||| |||||||||||||| || || |||||||||||||| |||||||| ||||||||
Sbjct 218 CTCAAGCTTGGAGAGATCGTGACTACGATTCCAACCATTGGTTTCAATGTGGAGACTGTG 277
Query 334 GAATACAAGAACATTAGCTTTACCGTGTGGGATGTCGGGGGTCAAGACAAGATCCGTCCA 393
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 278 GAATACAAGAACATTAGCTTTACCGTGTGGGATGTCGGGGGTCAAGACAAGATTCGTCCA 337
Query 394 TTGTGGAGACATTACTTCCAGAACACACAGGGACTTATCTTTGTTGTGGACAGCAATGAT 453
|||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 338 TTGTGGAGGCACTACTTCCAGAACACTCAGGGACTTATCTTTGTGGTGGACAGCAATGAT 397
Query 454 CGTGACCGTGTTGTTGAAGCCAGGGACGAGCTTCACAGGATGCTGAATGAGGATGAATTG 513
|||||||||||||| |||||||| || ||||||||||| ||| |||| || ||||| |||
Sbjct 398 CGTGACCGTGTTGTGGAAGCCAGAGATGAGCTTCACAGAATGTTGAACGAAGATGAGTTG 457
Query 514 AGGGATGCAGTTCTGCTTGTATTTGCTAACAAACAAGATCTTCCCAACGCGATGAACGCT 573
|| ||||| || || || || ||||||||||| ||||||||||| || |||||||||||
Sbjct 458 AGAGATGCTGTGCTTCTCGTTTTTGCTAACAAGCAAGATCTTCCAAATGCGATGAACGCC 517
Query 574 GCTGAGATAACTGACAAGCTTGGGCTTCACTCTCTTCGCCAACGACACTGGTACATTCAG 633
||||||||||| || |||||||| ||||||||||| || ||||||||||||||||| |||
Sbjct 518 GCTGAGATAACCGATAAGCTTGGACTTCACTCTCTCCGTCAACGACACTGGTACATACAG 577
Query 634 AGCACATGTGCCACCTCAGGAGAAGGGCTCTATGAGGGACTTGACTGGCTCTCCAACAAC 693
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 578 AGCACATGTGCTACCTCCGGAGAAGGGCTTTATGAGGGACTTGACTGGCTCTCTAACAAC 637
Query 694 ATCGCAAACAAGGCATAG 711
|||||||||||||| |||
Sbjct 638 ATCGCAAACAAGGCTTAG 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45060029859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5