BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483895
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47190.1 | Symbols: ATMYB2, MYB2 | myb domain protein 2 | ch... 1509 0.0
> AT2G47190.1 | Symbols: ATMYB2, MYB2 | myb domain protein 2 |
chr2:19376202-19377531 FORWARD LENGTH=1138
Length=1138
Score = 1509 bits (817), Expect = 0.0
Identities = 1046/1149 (91%), Gaps = 46/1149 (4%)
Strand=Plus/Plus
Query 1 AATCCACAAAAGCATTCACACAAtctcatctctatctctctctgtctctctTTTCCTTTT 60
||||||||||| ||||||||| |||||| ||| ||| ||||| | |||||||||||||
Sbjct 1 AATCCACAAAACCATTCACACCATCTCA--TCT-TCTTTCTCTCTATCTCTTTTCCTTTC 57
Query 61 CTCA-TTAAAG-TTCTTTTAAAAGAAATGGAAGATTACGAGC--A-AAACTCAAACTCTC 115
|||| |||||| ||| |||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 58 CTCATTTAAAGTTTC-TTTATAAGAAATGGAAGATTACGAGCGAATAAACTCAAACTCTC 116
Query 116 CAACTCATGAAGAAGATTCTGATGTACGGAAAGGTCCATGGACCGAGGAAGAAGATGCAA 175
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CAACACATGAAGAAGATTCTGATGTACGGAAAGGTCCATGGACCGAGGAAGAAGATGCAA 176
Query 176 TCCTAGTCAACTTCGTCTCTATCCATGGTGATGCTCGTTGGAACCACATCGCTCGTTCCT 235
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 177 TCCTAGTCAACTTCGTCTCTATCCATGGCGATGCTCGTTGGAACCACATCGCTCGTTCCT 236
Query 236 CTGGGCTAAAGAGAACTGGTAAGAGTTGCAGATTAAGATGGCTTAACTACTTACGTCCAG 295
||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 237 CTGGGCTAAAGCGAACTGGTAAGAGTTGTAGATTAAGATGGCTTAATTACTTACGTCCAG 296
Query 296 ATGTTAGAAGAGGCAACATCACTCTCGAAGAACAATTTATGATCCTCAAACTCCATTCTC 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATGTTAGAAGAGGCAACATCACTCTCGAAGAACAATTTATGATCCTCAAACTCCATTCTC 356
Query 356 TTTGGGGCAATAGGTGGTCGAAGATTGCACAGTATTTACCGGGAAGAACAGATAATGAAA 415
|||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct 357 TTTGGGGCAATAGGTGGTCGAAGATTGCGCAATATCTACCGGGAAGAACAGATAATGAAA 416
Query 416 TAAAGAATTATTGGAGAACCCGAGTCCAAAAGCAAGCTAAACACCTACGATGCGATGTTA 475
||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 417 TAAAGAATTATTGGAGAACTCGAGTCCAAAAGCAAGCCAAACACCTAAGATGCGATGTTA 476
Query 476 ATAGTAATCTTTTCAAGGAGACAATGAGAAATGTTTGGATGCCAAGATTGGTGGAAAGAA 535
| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||
Sbjct 477 ACAGTAATCTTTTCAAGGAGACTATGAGAAATGTTTGGATGCCGAGATTAGTGGAACGAA 536
Query 536 TTAATGCCCAATCATCACCCGCCACGTGTGAGCCGGTGGAGTCAATGATCACCGACCCAG 595
| || |||||||||| |||| |||||||||| | ||||||||||||||||||||||||
Sbjct 537 TCAACGCCCAATCATTACCCACCACGTGTGAACAAGTGGAGTCAATGATCACCGACCCAA 596
Query 596 GTCAACCTA-TTGAA-GAACCGATTCCGGTCGAACCGGGTTTCCTTCAATTCAACCAG-- 651
||||||| | || || ||||||| ||||||||| ||||||||| ||||||||| ||||
Sbjct 597 GTCAACC-AGTT-AACGAACCGAGTCCGGTCGAGCCGGGTTTCGTTCAATTCAGCCAGAA 654
Query 652 -CA--AT------TT-GTACCGGC-ATTGGAATTGTCCGCAACGTCTTCGAATTCGCTGG 700
|| || || |||||||| | ||||||||| ||||||||||||||||| | ||
Sbjct 655 TCATCATCAGCAATTCGTACCGGCTAC-GGAATTGTCAGCAACGTCTTCGAATTCTCCGG 713
Query 701 CTGAGACGTTATCGGACGTTCAAGGTGGGGTGGTGAACGGGTCGGGT-AGTGACCCGGCG 759
|||||||||| |||||||||| ||||||||||||||||||||| ||| | ||| ||| ||
Sbjct 714 CTGAGACGTTTTCGGACGTTCGAGGTGGGGTGGTGAACGGGTCAGGTTA-TGATCCGTCG 772
Query 760 GGTCAAACGGGTTTCGGAGAGTTCAACGATTGGGGCTGTGTTGGTGGGGACAACATATGG 819
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 773 GGTCAAACGGGTTTCGGAGAGTTCAACGATTGGGGCTGTGTTGGTGGGGACAACATGTGG 832
Query 820 ACCGATGAGGAGAGTTTTTGGTTCTTGCAGGACCAGTTCTGCCCTGAAATGACATCGTAT 879
|| || |||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 833 ACTGACGAGGAGAGTTTTTGGTTCTTGCAGGACCAGTTCTGCCCCGATACGACATCGTAT 892
Query 880 TCGTATAATTAAGGAAATATACGATTACGATACGTAACGAGGAATTCAATTGCGTCACGT 939
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 893 TCGTATAATTAAGGAAATATACGATTACTATACGTAACGAGGAATTCAATTGCGTCACGT 952
Query 940 TTGGTGTAGTAATATTCATTCGTGCGTGATGCCA-TTTTAGATACGGCCTTGGTATACGA 998
|||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 953 TTGGTGTA--A-TATTCATTCGTGCGTGATGCCAATTTTAGATACGGCCTTGGTATACGA 1009
Query 999 ATCTTGACTTAATTATTATGtttttttcttttctttttctcttgttttATACATCCCCCG 1058
||||||||||||||||||| |||| |||||| | ||||||||||| | ||||| |
Sbjct 1010 ATCTTGACTTAATTATTATCTTTT---CTTTTCCT---CTCTTGTTTTA-A--TCCCCTG 1060
Query 1059 ATTAAATTAAGATTTGATCATCACGG-GAGGATGTT-GTGATTCACTGATTTGTGATATA 1116
||||||||||||||||||||||| | |||||| || ||||||||||||||||||||||
Sbjct 1061 ATTAAATTAAGATTTGATCATCA-GACGAGGATATTTGTGATTCACTGATTTGTGATAT- 1118
Query 1117 TCATATATG 1125
| |||||||
Sbjct 1119 TGATATATG 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55973607675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5