BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483904

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G47270.1 | Symbols: UPB1 | sequence-specific DNA binding tra...   665    0.0  


> AT2G47270.1 | Symbols: UPB1 | sequence-specific DNA binding transcription 
factors;transcription regulators | chr2:19411560-19412151 
REVERSE LENGTH=592
Length=592

 Score =  665 bits (360),  Expect = 0.0
 Identities = 436/470 (93%), Gaps = 15/470 (3%)
 Strand=Plus/Plus

Query  1    GTTATCACTTGTCTATACAACATTCTTTCGTTTAC---AATAATATGGGAGTAACAACAT  57
            ||||||||||||||| ||||||||||||| |||||   ||||||||||| ||   |||||
Sbjct  59   GTTATCACTTGTCTACACAACATTCTTTCATTTACAATAATAATATGGGTGT---AACAT  115

Query  58   TAGAAGGACAAAGAAAGGAATCAATTTGGGTTTTGATGAGACGACAAAGGGCTCGAAGGG  117
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  116  TAGAAGGACAAAGAAAGGAATCAATTTGGGTTTTGATGAGAAGACAAAGGGCTCGAAGGG  175

Query  118  CACTTGTGAAGAAGATCATGATCCGACCGAGGAAGAGTCTAGAAGCTTCTAGAAGACCTT  177
            |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct  176  CACTTGTGAAGAAGATCATGATCCGACCAAGGAAGAGTGTAGAAGCTTCTAGAAGACCTT  235

Query  178  GCCGCGCAATACACAGAAGAGTCAAGACGCTGAAAGAGCTTGTTCCCAACACCAAAACAT  237
            | ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct  236  GTCGCGCAATACACAGACGAGTGAAGACGCTAAAAGAGCTTGTTCCCAACACCAAAACAT  295

Query  238  CAGAAGGTTTGGATGGACTCTTTAGACAAACGGCAGATTATATTTTGGCTTTGGAAATGA  297
            |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  296  CAGAAGGTTTAGATGGACTCTTTAGACAAACGGCAGATTATATCTTGGCTTTGGAAATGA  355

Query  298  AAGTGAGAGTTATGCAGACAATGGTTCAGGTTTTGACCGAAACTAACTGTGTTTAAAATC  357
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  356  AAGTGAAAGTTATGCAGACAATGGTTCAGGTTTTGACCGAAACTAACTGTGTTTAAAAGC  415

Query  358  CTTCAtatattttttgtatatcttaattaattgttggattttacgtg-tttttagttttt  416
            ||||||||||||||||||||||||        ||||||||||||||  ||||||||||||
Sbjct  416  CTTCATATATTTTTTGTATATCTT--------GTTGGATTTTACGTTCTTTTTAGTTTTT  467

Query  417  atttgtttgtgtttattttCTATTATCTCGTGTGACTGTCGTGTGTTGCT  466
            ||||||| ||||||||||| ||||||||||||||| |||| |||||||||
Sbjct  468  ATTTGTTCGTGTTTATTTTTTATTATCTCGTGTGATTGTCTTGTGTTGCT  517



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22153258827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5