BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483906
Length=2630
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47300.2 | Symbols: | ribonuclease Ps | chr2:19418471-19422... 3945 0.0
> AT2G47300.2 | Symbols: | ribonuclease Ps | chr2:19418471-19422241
FORWARD LENGTH=2908
Length=2908
Score = 3945 bits (2136), Expect = 0.0
Identities = 2502/2672 (94%), Gaps = 52/2672 (2%)
Strand=Plus/Plus
Query 1 ACTGATTCTCTAAGCCGTGTCCGTGTGCCAGTGTCTG-CCTTTGTCTTATTATCACTGCC 59
||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||
Sbjct 83 ACTGATTCTCTAAGCCGTGACGGTGTGCCAGTGTCTGTCC-TTGTCTTATTATCACTGCC 141
Query 60 GCAGTTCCTAATCTTGCCCGCCAACTGTTCGTCAAATTGCCTGAACCAATTGTT----C- 114
|||||||||| || ||||||||||||||||||||||||||||||||||||| || |
Sbjct 142 GCAGTTCCTATTCGTGCCCGCCAACTGTTCGTCAAATTGCCTGAACCAATTCTTCCGACA 201
Query 115 TTCCCAAAAGTTTGGA-TTT--TG-------------GGG----ATTC----T--TCAAG 148
||| ||||||||||| ||| || ||| |||| | |||||
Sbjct 202 ATCCTAAAAGTTTGGATTTTGGTGATTCTAAAAACTAGGGTTTTATTCAAATTACTCAAG 261
Query 149 AATGGCCACTACTACGAATGGAAACTCTAAGAAAAGAGATGGTGGTTTATCGTCGCTTGC 208
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 262 AATGGCTACTACTGCGAATGGAAACTCTAAGAAAAGAGATGGTGGTCTATCGTCGCTTGC 321
Query 209 CCCTCGCAAAATCAACGTCCAGAAATTCTCAGAGGCTCGAGCAGCGGAGCTCGAATCTCT 268
|||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct 322 CCCTCGCAAAATCAACGTGCAGAAATTCTCAGAGGCTCGAGCACCAGAGCTCGAATCTCT 381
Query 269 TCACTCCATTGTGTCTGAACGTTTGAACAAGGACTTTCGATCAAAGAGGAATAAGAGGAG 328
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TCACTCCATTGTGTCTGAGCGTTTGAACAAGGACTTTCGATCAAAGAGGAATAAGAGGAG 441
Query 329 AAGGACCAATTCTTACAATAATCAACCTGCAAAGAAGCGTTATATACAGAGGCAGAAATC 388
|||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||||
Sbjct 442 AAGGACCAATTCTTACAATAATCAACCTGCGAAGAAGCGTAATATAAAGAGGCAAAAATC 501
Query 389 AGAGTCATTGATTGGTCAAGTATCAGGAGGAGGAGACCATGAAACAAAGATCACTAGACG 448
| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 502 ACAGTCATTGATTGGTCAAGTATC---AGGAGGAGACCATGAAGTAAAGATCACTAGACG 558
Query 449 AGTTAAGAGAAGAATGGAACTTAAAGGGAACCCTCAATCTGGTTTTTGTACTTCTGGTGA 508
|||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 559 AGTTAAGAGAAGAATGGAACTTAAAGGGAACCCTGAAACTGGGTTTTGTACTTCTGGTGA 618
Query 509 TGGGACAAAGAGGCTGAGAACACATGTTTGGCATGCTAAACGATTTACGATGACTAAGCT 568
||| || |||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 619 TGGAACTAAGAGGCTGAGAACACATGTTTGGCACGCTAAACGATTCACTATGACTAAGCT 678
Query 569 TTGGGGCTTTCACCTTCCTCTTGGTTTACATGGAAGAGGAAGGGGATCTAGGGATGTCTT 628
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 679 TTGGGGTTTTCACCTTCCTCTTGGTTTACACGGAAGAGGAAGGGGATCTAGGGATGTCTT 738
Query 629 GAAGCAATCTAGGCAAGGGGTTCTTGTTCATGATGCAAGCTATCACATTGCTGTGCAATT 688
|||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 739 GAAGCAGTCTCGGCAAGGTGTTCTTGTTCATGATGCAAGCTATCACATTGCTGTGCAATT 798
Query 689 GGAGGGTCCAGAGGGCTCACTCTTGTCGATATTAAATATGCTACTAGAGCCTTCTCCTTC 748
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 799 GGAGGGTCCAGAGGGCTCACTCTTATCGATATTAAATATGCTACTAGAGCCTTCTCCGTC 858
Query 749 ATCTCATTCCAAGGAAGTTTTTGACTCTATTCTCACAGGCCGTAGTTATGAAAACGCCAT 808
||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 859 ATCTCATTCGAAGGAAGTTTTCGACTCTATTCTCACTGGCGGTAGTTATGAAAACGCCAT 918
Query 809 GCTTTATCATCTCGAACCACCAGTTTCTCAGGCGATTGCTCCTGTAACTTATATGTGGAG 868
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 919 GCTTTATCATGTCGAACCACCAGTTTCTCAGGCGATTGCTCCTGTTACTTATATGTGGAG 978
Query 869 ACCTTCTCAGATACCAAAGAGAAGAGATGAGGAGAAAGGAGGG-GACGGCATAGGAACTG 927
||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||
Sbjct 979 ACCTTCTAAGATACCAAAGAGAAGAAATGAGGAGAAAGG-GGGTGACGGCATAGGAACTG 1037
Query 928 ATCGCCCAGTCTCAGATAGAGATTATGTAGACTTTCGAAAACTTTGGGTGTGGATCCATG 987
||| |||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||
Sbjct 1038 ATCTCCCAGTCTCAGATAAAGATCATGAAGACTTTCGTAAACTTTGGGTGTGGATCCATG 1097
Query 988 CTTCTTCCTTCACTGAAGGATATGCTATTCTTAAAGTAGCTTGTCAGAAACAGATGAATG 1047
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 CTTCTTCCTTCAGTGAAGGATATGCTATTCTTAAAGTAGCTTGTCAGAAACAGATGAATG 1157
Query 1048 AGACAGGTGTCTCAGTTGATTGCTTTTCACTCGAGGGCCAGCTTGCAAAACTTGAGATTT 1107
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1158 AGACAGGTGTCTCAGTTGATTGCTTTTCACTCGAGGGTCAGCTTGCAAAACTTGAGATTT 1217
Query 1108 TTGGTCCAAAAGCATCTCATCTTCTCCAGAAGACCCTACATCCTGCTCCAAGTAGCTCAG 1167
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |
Sbjct 1218 TTGGTTCAAAAGCATCTCATCTTCTCCAGAAGACCTTACATCCTGCTACAAGTACCTCTG 1277
Query 1168 AGGATACCTCTATTTCTAA-AATGTGTTCAATGGAAAAAGCTGAGGTTAAAAACGTTGCT 1226
|| || |||||||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1278 AGAATCCCTCTATT-CTAAGAAAGTGTTCAATGGAAAAAGCTGAGGTTAAAAACGTTGCT 1336
Query 1227 GATCCTTACAAAGAAGAGAACGTATCATCTGGCGCTATTTTAGCACAGTTTGTCATAGAT 1286
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 GATCTTTACACAGAAGAGAACGTATCATCTGGCGCTATTTTAGCACAGTTTGTCATAGAT 1396
Query 1287 CCGCGGTTAATCCTGAATAGTCCACGTGATGATAGTACAGTGTCATTTGAAACGACCAAA 1346
|||||||| ||||||| ||| |||| ||||||||| ||||||||| ||||||||| ||||
Sbjct 1397 CCGCGGTTGATCCTGACTAGCCCACATGATGATAGGACAGTGTCAGTTGAAACGATCAAA 1456
Query 1347 ACTGAGCCTACTGAGTCAC-TTGAAACAACAACCAACGCTGAGGCTGAAACTTTTCCTGA 1405
||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1457 ACTGAGCCTACTGAGTC-CGTTGAAACAACAACCAACACTGAGGCTGAAACTTTTCCTGA 1515
Query 1406 AGTTTTCAACTGCTTGTGGGATGCAAATCGTGAGCTGAACCCTCCAGAAGAAGAGAACAT 1465
|||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||
Sbjct 1516 AGTTTTCAACTGCTTGTGGGATGCAAATAGTGAGCTGACCCCTCCCGAAGAAGAGAACAT 1575
Query 1466 GTTGTGTTGGGAAAAGCATCAAAGTCGTCTGGATTCTCTTTGCCTCGATGACCCAGCTGC 1525
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1576 GTTGTGTTGGGAAAAGCATCAAAGTCGTATGGATTCTCTTTGCCTCGATGACCCAGCTGC 1635
Query 1526 TGATGTTCCAAAGGTATCTAGTAGGCTAAGGAGTTCAAGGTCTTGTCCTTTACTGCTTCT 1585
||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1636 TGAGGTTCCAAAGGTATCTAGTAGGCCAAGGAGTTCAAGGTCCTGTCCTTTACTGCTTCT 1695
Query 1586 TAAACATAAAAAACTTGGGAATGCACCTACCGGATGGTCTCTTATACTTCCCCTTAGTTG 1645
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1696 TAAACATAAAAAACTTGGGAATGCGCCTACTGGATGGTCTCTTATTCTTCCCCTTAGTTG 1755
Query 1646 GATCAAAGTCTTCTGGAATGCCTTGGTCTCAAAAGGAGCTCATGCAATAGGTCAGAGGGA 1705
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1756 GATCAAAGTCTTCTGGAATGCCTTCGTCTCAAAAGGAGCTCATGCAATAGGTCAGAGGGA 1815
Query 1706 GAAACGCTGGGTTTCTTGTGATGATGGTTTGCCCTTTTTCCCATCAGATTT-CCCGGACT 1764
||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |||
Sbjct 1816 GAAACGCTGGGTTTCATGTGATGATGGTTTACCCTTTTTCCCATCAGATTTTCCCG-ACT 1874
Query 1765 GTAAAGCGTATTCATCTTTTACACTGAGCGAGGCTGCAGACTTGGAAGAAAAGGCACAAC 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1875 GTAAAGCGTATTCATCTTTTACACTGAGCGAGGCTGCAGACTTGGAAGAAAAGGCACAAC 1934
Query 1825 GTCGCCCTCCAGCCATGAGACCTTTCAGAATTCCCATTCCACCTCCATGGAATAGTATCC 1884
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1935 GTCGCCCTCCAGCCATAAGACCTTTCAGAATTCCCATTCCACCTCCATGGAATAGTATCC 1994
Query 1885 ACGTCACACGTTCTATTGGAGAGAGTTCCAATCAAAAGCTTACAAGCAATGGGACGAATG 1944
| ||||| ||||||||||||||| |||||||||||||| || |||||||||||| || ||
Sbjct 1995 ATGTCACCCGTTCTATTGGAGAGGGTTCCAATCAAAAGTTTTCAAGCAATGGGAGGAGTG 2054
Query 1945 GAGTGGAAATTTCCAGTTCTGGTGGTAATCTATTTGATGGTATCGTGGCAAGAACATCAG 2004
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 2055 TTGTGGAAATTTCCAGTTATGGTGGTAATCTGTTTGATGGTATCGTGGCAAGAACATCAG 2114
Query 2005 ATTCGCTGACTACTTTTCTCCAAACATTCACAAGTGACAACTTGCTTTTATTACCTCACA 2064
||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 2115 ATTCGCTAACTACTTTTCTCCAAACATTCACAAGTGACAACATGCTTTTATTTCCTCACA 2174
Query 2065 ACACTTCAAAA--A--CA-A-ACCTTATGAAGAAGCTTCAAGAAGATGATAAAAAAGTAA 2118
||||||||||| | || | ||||||||| || ||||||||||||||||||||||||||
Sbjct 2175 ACACTTCAAAACCAAGCACAGACCTTATGATGACGCTTCAAGAAGATGATAAAAAAGTAA 2234
Query 2119 GAGCTCAGATCCATCAGAGTAGTAAGAAACTGTGCCTCGTCAGAGTTCTTTTACATGCTT 2178
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 2235 GAGCTCAGATCCATCAGAGTAGTAACAAACTGTGCCTCGTCAGAGTTCTTCTACATGCTT 2294
Query 2179 TCAAGGAAGGTTCTTTCGAAGAAGGCGCGGTTGTATGTGTACCAACTCTTGCAGACATAT 2238
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2295 TCAAGGAAGGTTCTTTCGAAGAAGGCGCGGTTGTATGTGCACCAACTCTTGCAGACATAT 2354
Query 2239 CATTGCTAAAATCCAGCTGCGGTGAAGGAGAAGAAGGGCGTGTTACAATGCCGCAATCTT 2298
|||||||||||||||||||| ||||||||||||| |||||||| ||||| || |||||||
Sbjct 2355 CATTGCTAAAATCCAGCTGCAGTGAAGGAGAAGATGGGCGTGTCACAATCCCACAATCTT 2414
Query 2299 CTGTAAGTTCTTACTTTCAAGAACAACCTTCTGGAAGCTGGGAACTAAATGTCTCC-GAA 2357
|||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |||
Sbjct 2415 CTGTAAGTTCTTACTTTCAAGAACAACCTTGTGGAACCTGGGAACTAAATGT-TCCTGAA 2473
Query 2358 GACACTCTTACAGAGCAATCTCATAGATGGCCAATCGGGTTTGTAACAACAGGATTTGTC 2417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2474 GACACTCTTACAGAGCAATCTCATAGATGGCCAATCGGGTTTGTAACAACAGGATTTGTA 2533
Query 2418 CGTGGGAGTAAAAAGCCGGCGGCAGAAGCTTTCTGTGATGCGGTGTTGTTAGGGAGACTA 2477
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2534 CGTGGGAGTAAAAAGCCGGCGGCCGAAGCTTTCTGTGATGCGGTGTTGTTAGGGAGACTA 2593
Query 2478 AGAGACGAGCAATGGAGAGACAAAGATGTAAAACGGAGGAAGAAGCAGATTTATGTTTTA 2537
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2594 AGAGATGAGCAATGGAGAGACAAAGATGTAAGACGGAGGAAGAAGCAGATTTATGTTTTA 2653
Query 2538 GTTAGAAACCTAAGATCTTGTGCGTTTAGACTCGCACTTGCTACCATTGTCTTGGAGCTA 2597
||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |
Sbjct 2654 GTTAGAAACCTAAGATCTTCTGCTTTTAGACTCGCACTTGCTACGATTGTCTTGGAGCAA 2713
Query 2598 CAAGACTCTTGTGATGTCCACTGCTTTTAAAA 2629
||||||| ||||||||||||||||||||||||
Sbjct 2714 CAAGACTATTGTGATGTCCACTGCTTTTAAAA 2745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130584552629
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5