BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483907
Length=1865
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47310.1 | Symbols: | flowering time control protein-relate... 2571 0.0
> AT2G47310.1 | Symbols: | flowering time control protein-related
/ FCA gamma-related | chr2:19423684-19427277 FORWARD LENGTH=1985
Length=1985
Score = 2571 bits (1392), Expect = 0.0
Identities = 1681/1816 (93%), Gaps = 38/1816 (2%)
Strand=Plus/Plus
Query 60 TTCTAGATGGAGAGACGTGTCCCAAACGCATTCCCTGGTGCCCCACCACCAGTTCCATAC 119
||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| |||
Sbjct 102 TTCTAGATGGAGAGACGCGCCCCAAACGCATTCCCTGGTGCTCCACCACCAGTTCCCTAC 161
Query 120 TATCAAAACAACTACAACAACCCTCATCATCATCAGACTCAT---CCGCCGCCGCAGCAC 176
||||| ||||||||||||||||||| ||||||||||| |||| |||||||||| ||||
Sbjct 162 TATCATAACAACTACAACAACCCTCCTCATCATCAGATTCATCCGCCGCCGCCGCCGCAC 221
Query 177 CACCATGTCGCCGCCATTGGATTCCACCAATACCCCCAAAACGACAACAGGGAGCAGCGT 236
|||||| |||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 222 CACCATATCGCTGCCGTTGGATTCCACAAATACCCCCAAAACGACAACAGGGATCAGCGT 281
Query 237 TTCAATCAGCCGCATCACTCCGGCCAACATCAGAACATGATCGTTGATCAGAGTAATAAC 296
|||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 282 TTCAATCAACCGCATTACTCCGGCCAACAGCAGAACATGATCGTTGATCAGAGTAATAAC 341
Query 297 GCTCCTCCGCCGTTTCCACCGAGTCCTTGCGGTGGTGGCAGCTTAAGGAAGAGACGGTCT 356
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 342 GCTCCTCCGCCGTTTCCGCCGAGTCCTTGCGGTGGCAGCAGCTTAAGGAAGAGACGGTCT 401
Query 357 CAATCAGCTACAGATACTGCTGATGGTAGTATTGCCAAGTTATATGTTGCGCCCATCTCA 416
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 CAATCAGCTACAGATAATGCTGATGGTAGTATTGCCAAGTTATATGTTGCGCCCATCTCA 461
Query 417 AAGACATCAACTGAATATGATATCCGTCAGGTCTTTGAAACATATGGTAATGTCACTGAG 476
|||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 462 AAGACAGCTACTGAATATGATATCCGTCAGGTCTTTGAAAAATATGGTAATGTCACTGAG 521
Query 477 ATCATTCTACCCAAAGATAAGATGACCGGTGACAGAGCAGCTTACTGTTTTGTTAAGTAC 536
|||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 522 ATCATTCTACCCAAAGATAAGATGACCGGTGAAAGGGCAGCTTACTGTTTTATTAAGTAC 581
Query 537 AAAAAGGTTGAAGAGGGTAATGCCGCTATTGCAGCTTTAGCTGAACAGTTTACCTTTCCT 596
|||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 582 AAAAAGGTAGAAGAGGGTAATGCGGCTATTGCAGCTTTAACTGAACAGTTTACCTTTCCT 641
Query 597 GGGGAAATGCTTCCAGTCAAGGTCCGATTTGCTGACGCTGAACGGGAACGGATTGGTTTT 656
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 642 GGGGAAATGCTTCCAGTCAAGGTCCGATTTGCTGAAGCTGAACGAGAACGGATTGGTTTT 701
Query 657 GCCCCGGTGCAACCTCCTGACAACCCTAAACTATATGTTAGATGCCTCAACAAACAAACT 716
||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 702 GCCCCAGTGCAACTTCCTGATAACCCTAAACTATATGTTAGATGCCTCAACAAACAAACT 761
Query 717 ACAAAAATGGAAGTCCATGAGGTCTTCTCTAGGTTCGGAATCATTGAAGATATTTATATG 776
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 762 ACAAAAATGGAAGTCAATGAGGTCTTCTCTAGGTACGGAATCATTGAAGATATTTATATG 821
Query 777 GCACTTGACGACATGAAGATTAGTCGTGGGTATGCATTTGTTCAGTTTTCTTGTAGGGAG 836
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 822 GCACTTGACGACATGAAGATTTGTCGTGGGTATGCATTTGTTCAGTTTTCTTGTAAAGAG 881
Query 837 ATGGCACTAGCAGCAATCAAAGGTTTAAATGGAGTCTTTACCATGCGGGGTTCTGATCAG 896
||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||
Sbjct 882 ATGGCACTAGCGGCAATCAAAGCTTTAAATGGACTCTTTACCATACGGGGTTCTGATCAG 941
Query 897 CCTTTGATTGTTAGATTTGCAGATCCTAAAAAACC------A----A-----GGTCTACC 941
||| |||||||||||||||| |||||||||||||| | | ||||||||
Sbjct 942 CCTCTGATTGTTAGATTTGCTGATCCTAAAAAACCCCGTCTAGGGGAACAAAGGTCTACC 1001
Query 942 TTTAACACTCCACCTGCAATGCAACAGTTCGACCCAAATTGGCATTCACAACCATATCCC 1001
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1002 TTTAACACTCCACCTGCAATGCAACACTTCGACCCAAATTGGCATTCACAACCATATCCC 1061
Query 1002 CAATGGGAAAACAAGGAACCTGCAGCCCCTAGAGTCGTCCAGCATCATGATTTCTCTTCA 1061
|| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1062 CAGTGGGAAAACAAGGAACCTGCACCCCCTAGAGTCGTTCAGCATCATGATTTCTCTTCA 1121
Query 1062 CAACCAAATCACTTCCCGCACCAAAATACTCAAGCAGTATCCGAGGTTCATCAACCACTG 1121
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1122 CAGCCAAATCACTTCCCGCACCAAAATACTCAAGCAGTATCCGAGGTTCATAAACCACTG 1181
Query 1122 CATCAAGATATTCCACCT-CAAAATTTGGAGAAGCATCAGAATTCTGAGACTGCCAGCGT 1180
|||||||||||||||||| | || |||| ||||||||||||| |||||||||||||||||
Sbjct 1182 CATCAAGATATTCCACCTGCTAATTTTG-AGAAGCATCAGAAATCTGAGACTGCCAGCGT 1240
Query 1181 AGAGACTAGAAGGGATGGTCAGAAGATTTCTAGTCATTCAAATGCATTCCCTGAAGATCA 1240
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1241 GGAGACTAGAAGTGATGGTCAGAAGATTTCTAGTCATTCAAATGCATTCCATGAAGATCA 1300
Query 1241 AAATACAGTGAGCTCTGAGTGTGACTGGAGTGAACATACTTGTCCCGATGGGAATAAATA 1300
||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1301 AAATACAGTGAGCTCAGAGTGTGACTGGAGTGAACACACTTGTCCCAATGGGAATAAATA 1360
Query 1301 TTACTTTCATTGCGTCACTTGCGAAAGCACGTGGGAGAAACCTGAAGAATACTCCATGTT 1360
|||||| |||||| |||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1361 TTACTTCCATTGCATCACTTGCGAAAGCACGTGGGAGAAACCGGACGAATACTCCATGTA 1420
Query 1361 TGAGAGATGGTTCGAA-GAGCAAACAAGGCTACAAGATCTAAAACTTGTATCTCCCCCGT 1419
||| |||||||| ||| ||||||||||||||||| ||| |||| || |||||||||||
Sbjct 1421 TGAAAGATGGTT-GAAAGAGCAAACAAGGCTACAGGATGAAAAAATTAAATCTCCCCCGT 1479
Query 1420 TAAACAATGAGAGCCAAAAAGCAATCGAAAACAGCGAGCAAGTTGAGTCAGATCTATTGC 1479
||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 1480 TAAACAATGAGAGCCAAGAAGCAATCGAAAACAGCGAGCAAGTTGAGTCTGATGTATTAC 1539
Query 1480 AACAGAATGCTAAACTCCAACAACCATCCTTATCCACAGCGGATCAGGAGAACAATGTAG 1539
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 AACAGAATGGTGAACTCCAACAACCATCCTTATCCACAGCGGATCAGGAGAACAATGTAG 1599
Query 1540 TA-TAT--CGAGTAACAACAGTAGCTGTTGAAACAACATGTTCATAAAAGGTTTCTTCAG 1596
|| ||| | |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1600 TAGTATATCCAGTAACAACACTAGCTGTTGAAACAACATGTTCATAAAAGGTTTCTTCAG 1659
Query 1597 GTAAAAAAC-CGACGGCGGAAGCTTTGTGTGATGAGCAATGGAGAGAT-AAAGCTGTAAA 1654
||||||| | || | ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1660 -TAAAAAAATCTACTGAGGAAGCTTTGTGTGATGAGCAATGGAGAGATGAAAGCTGTAAA 1718
Query 1655 ACGGAGAAAGAAGGAGATATTAATTATGTTTTGTTTAGAAACTT--AGAATTGGAAAG-A 1711
||||||||||||| |||| || | | |||||| |||||||||| |||||||||||| |
Sbjct 1719 ACGGAGAAAGAAGCAGAT-TT--T-ACGTTTTGGTTAGAAACTTTTAGAATTGGAAAGGA 1774
Query 1712 AAAA-TAATCGAAAATTTGTTTTGATAAACGGTAAATAAACCTATTTTCACCTGATCCAA 1770
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1775 AAAAATAATCGAAAAATTATTTTGATAAACGGTAAATAAACCTATTTTCACCTGATCCAA 1834
Query 1771 ACCAAAAACTAAACGGTATCTAA-TTAACCTCTACTATAATCC-ATTTCAAATTCAATCT 1828
|||||| ||| |||||||| || |||| |||||||||||||| |||||||||||||| |
Sbjct 1835 ACCAAACACTTCACGGTATCAAAATTAATCTCTACTATAATCCCATTTCAAATTCAATTT 1894
Query 1829 TATTATTTACAAAAAT 1844
| ||||||||| ||||
Sbjct 1895 TGTTATTTACATAAAT 1910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92318802255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5