BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483908
Length=2501
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosp... 2785 0.0
AT2G47320.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 62.1 3e-08
> AT2G47330.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:19428897-19431720
REVERSE LENGTH=2572
Length=2572
Score = 2785 bits (1508), Expect = 0.0
Identities = 1700/1794 (95%), Gaps = 8/1794 (0%)
Strand=Plus/Plus
Query 1 AAAAAACACGAAACCCTAAATTTCGTCGTAATTGGCAACAGTTGAGCTCTTTGCTCAAAG 60
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 12 AAAAAACACGAAGCCCTAAATTTCGTCGTAATTGGCAACAGTTAAGCTCTTTGCTAAAAG 71
Query 61 CTATTATAGCTGAGAAGAGAAATTCTATGTGAATAATGTCAAATCGGAAGTTCGGTATTG 120
| | ||||||||||| ||||||| | ||||| |||||| ||||| || ||||| || |
Sbjct 72 C---TCTAGCTGAGAAGCGAAATTCGAAGTGAAGAATGTCTAATCGCAAATTCGGAATGG 128
Query 121 AAGGATTCGGCATAAATCGGCAAACTAGCTACAGTTTCGAGCGATCTCAAGCACCTCAAC 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 129 AAGGATTCGGCATTAATCGGCAAACTAGCTACAGTTTCGAGCGATCTCAAGCACCGCAAC 188
Query 181 GTCTCTACGTCCCTCCCTCGTCTCGCGGCGGAGACAACTCCGAAGATGCCGATCTAGATA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 189 GTCTCTACGTCCCTCCCTCGTCTCGCGGCGGAGACAACTCCGAAGATGCCGATCTTGATA 248
Query 241 ACATTGATTACATAGAAAACGAAGAAGCAGAGGAAGACATTGAGGAAGGCGGTTCTGCTG 300
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 249 ACATTGATTACATGGAAAACGAAGAAGCTGAGGAAGATATTGAGGAAGGCGGTTCTGCTG 308
Query 301 CGGCTAACGGTGGCGAGGATGATGAGATCGATCCATTAGATGCTTTTATGGAGGGAATTC 360
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CGGCTAGCGGTGGCGAGGTTGATGAGATCGATCCATTAGATGCTTTTATGGAGGGAATTC 368
Query 361 ACCAGGAGATGAAATCTGCTCCACCTCCTAAGCCAAAGGAGAAATTGGAGAGGTACAAGG 420
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 369 ACCAGGAGATGAAATCTGCTCCACCTCCTAAGCCAAAGGAGAAACTAGAGAGGTACAAGG 428
Query 421 ACGACGAAGATGACGATCCTGTTGAGAGTTTCCTCAAGGCCAAGAAGGATTTGGGCCTGA 480
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 429 ACGAC---GATGACGATCCTGTTGAGAGTTACCTCAAGGCCAAGAAGGATTTGGGCCTGA 485
Query 481 CACTAGCCGCCGATGCGCTTAACGCAGGTTATAACTCCGACGAGGAGGTTTACGCTGCAG 540
|||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||||
Sbjct 486 CACTAGCCGCCGATGCACTTAACGCCGGTTATAACTCCGACGAGGAGGTGTATGCTGCAG 545
Query 541 CCAAGGCGGTGGATGCAGGGATGCTGGAGTACGATTCCGATGATAATCCGATTGTTGTGG 600
| |||||||| |||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 546 CTAAGGCGGTCGATGCAGGGATGCTAGATTATGATTCCGATGATAATCCGATTGTTGTGG 605
Query 601 ATAAAAGGAAGATTGAGCCGATTACAGCTCTGGATCATAGCTCCATCGATTACGAACCAA 660
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 606 ATAAAAGGAAGATTGAGCCTATTACAGCTCTGGATCATAGCTCCATCGATTATGAACCTA 665
Query 661 TTAATAAGGACTTTTACGAGGAGGTGGAATCAATATCGGGCATGAGTGAACAAGAAACTT 720
||||||||||||||||||||||| | ||||||||||| || |||| ||| ||||||||
Sbjct 666 TTAATAAGGACTTTTACGAGGAGCTAGAATCAATATCAGGAATGACTGAGCAAGAAACCA 725
Query 721 CGGATTACCGACAGAGATTAGGAATCCGTGTGTCGGGTTTTGATGTTCATCGGCCAGTTA 780
|||||||||| ||||||||||| || || || |||||||||||||||||| |||||||||
Sbjct 726 CGGATTACCGTCAGAGATTAGGGATTCGGGTCTCGGGTTTTGATGTTCATAGGCCAGTTA 785
Query 781 AGACCTTTGAGGATTGTGGTTTTTCCTCACAGATTATGAGTGCTATCAAAAAGCAAGCTT 840
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 786 AGACCTTTGAGGATTGTGGATTTTCCTCACAGATTATGAGTGCTATCAAAAAGCAAGCTT 845
Query 841 ATGAAAAACCTACAGCAATCCAATGTCAGGCTTTACCTATTGTGCTATCTGGTCGAGATG 900
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 846 ATGAAAAACCTACAGCAATCCAATGTCAGGCTTTACCTATTGTGTTGTCTGGTCGAGATG 905
Query 901 TTATTGGCATAGCCAAAACTGGTTCAGGTAAGACTGCAGCGTTTGTTCTTCCCATGATTG 960
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 906 TTATTGGCATAGCCAAAACTGGTTCAGGTAAGACTGCAGCGTTTGTTCTTCCAATGATTG 965
Query 961 TTCATATTATGGATCAGCCGGAACTTCAGAAAGATGAAGGTCCAATTGGTGTCATATGTG 1020
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 966 TTCATATTATGGATCAGCCTGAACTTCAGAGAGATGAAGGTCCAATTGGTGTCATATGTG 1025
Query 1021 CCCCAACCAGAGAATTGGCTCATCAAATCTTCTTGGAAGCGAAGAAATTTTCGAAAGCAT 1080
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1026 CTCCAACCAGAGAATTGGCTCATCAAATCTTCTTGGAAGCCAAGAAATTTTCGAAAGCAT 1085
Query 1081 ATGGTTTACGAGCCTCTGCTGTGTACGGTGGAATGTCTAAACATGAACAGTTTAAGGAAC 1140
|||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1086 ATGGCTTACGAGTCTCTGCTGTGTATGGTGGAATGTCTAAACATGAACAGTTTAAGGAAC 1145
Query 1141 TCAAGGCGGGTTGCGAGATAGTTGTTGCTACTCCTGGAAGGTTAATAGACATGCTGAAGA 1200
||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1146 TCAAGGCAGGATGCGAAATAGTTGTTGCTACTCCTGGAAGGTTGATAGACATGCTGAAGA 1205
Query 1201 TTAAGGCTTTGACAATGATGAGAGCCAGTTATTTGGTTCTTGATGAGGCAGATCGGATGT 1260
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 TGAAGGCTTTGACAATGATGAGAGCCAGTTATTTGGTTCTTGATGAGGCAGATCGGATGT 1265
Query 1261 TTGACCTTGGTTTTGAGCCACAAGTAAGGTCTATCGTTGGCCAGATTCGTCCTGATCGCC 1320
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1266 TTGACCTTGGCTTTGAGCCACAAGTAAGGTCTATTGTTGGCCAGATTCGTCCTGATCGCC 1325
Query 1321 AGACTTTACTCTTTTCAGCCACTATGCCTTGGAAAGTTGAAAAGTTAGCTAGGGAAATCC 1380
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 AGACTTTACTATTTTCAGCCACTATGCCTTGGAAAGTTGAAAAGTTAGCTAGGGAAATCC 1385
Query 1381 TTTCAGATCCTATTAGAGTCACAGTTGGTGAAGTGGGGATGGCCAATGAAGATATTACGC 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TTTCAGATCCTATTAGAGTCACAGTTGGTGAAGTGGGGATGGCCAATGAAGATATTACGC 1445
Query 1441 AGGTTGTCAATGTAATACCTTCGGATGCTGAAAAACTTCCCTGGCTACTTGAGAAGCTCC 1500
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1446 AGGTTGTCAATGTCATACCTTCTGATGCTGAAAAACTTCCCTGGCTACTTGAAAAGCTCC 1505
Query 1501 CTGGAATGATAGATGAGGGTGACGTTTTAGTCTTTGCTTCTAAAAAGGCCACTGTTGATG 1560
|||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 1506 CTGGAATGATTGATGAGGGTGACGTATTAGTGTTTGCATCTAAAAAGGCCACTGTTGATG 1565
Query 1561 AGATCGAAGCTCAGCTTACTCTAAATTCCTTTAAAGTTGCTGCTCTTCACGGTGATAAAG 1620
|||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1566 AGATTGAAGCTCAACTTACTCTAAATTCCTTCAAAGTTGCTGCTCTTCACGGTGATAAAG 1625
Query 1621 ACCAAGCATCACGAATGGAAACTTTGCAGAAGTTCAAATCTGGAAT-CTACCATGTGCTG 1679
||||||||||||||||||||||| |||||||||||||||||||| | | |||||||||||
Sbjct 1626 ACCAAGCATCACGAATGGAAACTCTGCAGAAGTTCAAATCTGGAGTTC-ACCATGTGCTG 1684
Query 1680 ATTGCCACTGATGTTGCTGCGCGAGGTCTTGACATCAAATCGCTTAAGACAGTTGTTAAC 1739
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1685 ATTGCCACTGATGTTGCTGCCCGAGGTCTTGACATCAAATCGCTTAAGACAGTGGTTAAC 1744
Query 1740 TATGACATTGCAAGAGATATGGACATGCATGTACATCGTATTGGTAGAACTGGC 1793
|||||||| |||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1745 TATGACATCGCAAAAGATATGGACATGCATGTACATCGTATTGGTAGAACAGGC 1798
Score = 1038 bits (562), Expect = 0.0
Identities = 669/719 (93%), Gaps = 13/719 (2%)
Strand=Plus/Plus
Query 1789 CTGGCGAATTGGT-GACTAGTCTGGTTGCAGCTGGTCAAATTGTGCCGCCAGAACTCATG 1847
|||| |||||||| || ||||||||||| |||||||||| |||||| ||||||||||
Sbjct 1860 CTGGTGAATTGGTAAAC-AGTCTGGTTGCTGCTGGTCAAAATGTGCCTCCAGAACTCACA 1918
Query 1848 GATCTCGCCATGAAGGATGGACGATTCAAGTCCAAGCGTGACGGGAGAAAAGGAGGTAAG 1907
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 GATCTTGCCATGAAGGATGGACGATTCAAGTCCAAGCGTGACGGGAGAAAAGGAGGTAAG 1978
Query 1908 AAAGGCCGAGGAGGAGGTGGTGGAAACAAAGGAGTACGTGGAGTTGATTTTGGTCTTGGT 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 AAAGGCCGAGGAGGAGGTGGTGGAAACAAAGGAGTACGTGGAGTTGATTTTGGTCTTGGT 2038
Query 1968 ATTGGATTTAGCTCGGAATCTAGTGGGACACCATCTTCTAAAGCTGCACCAAGTAGAAGC 2027
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 2039 ATTGGATTTAGCTCGGAATCTAGTAGGACACCTTCTTCTAAAGCTGCACCAAGTAGAAGT 2098
Query 2028 GGGGCAATCAATTCAGTGAGAACTGGAGTAATGGCCCAATTCAAGAGTAGCTTTGTTGCT 2087
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 2099 GGGGCAATCAATTCAGTGAGAACTGGAGTAATGGCCCAATTCAAGAATAGTTTTGTCGCT 2158
Query 2088 GCAACGCCATCGAATCCACAAAGCCAAGCTTATCCAAACAAGAGACCATCCCTAATGGGC 2147
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2159 GCAACGCCATCAAATCCACAAAACCAAGCTTATCCAAACAAGAGACCATCCCTAATGGGC 2218
Query 2148 TTTGTCTCGGGTGGTACCATTGGTGGGGACATGGGTAGAACTCAGAGTCAAGCTCCCCCA 2207
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2219 TTTGTCTCAGGTGGTACTATTGGTGGAGACATGGGTAGAACTCAGAGTCAAGCTCCCCCA 2278
Query 2208 GTAGCACCTACTCAAAACGCTTCATTACATAACTCGAGCCAGAATCATTCACAGAGTTCT 2267
|||||||||||||||||||| |||| ||| ||||| ||||||||||| ||||||||||||
Sbjct 2279 GTAGCACCTACTCAAAACGCCTCATCACACAACTCCAGCCAGAATCACTCACAGAGTTCT 2338
Query 2268 GAGAATCGGCCTAGAGAGAGGAAGAGGAGATCTGGTTGGGATAATTGACTGAGCCACGTT 2327
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 2339 GAGAATCGGCCTAGAGAGAGGAAGAGAAGATCTGGTTGGGATAATTGAGTGAGCCACGTT 2398
Query 2328 TTGCATG-T--TAGTGGAAGTGTTTTGCATGAACAATGTAATGAATGTTGTATAATTTGT 2384
||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2399 TTGCATGATGATAGTGGAAGTGTTTTGCAC-AACAATGTAATGAATGTTGTATAATTTGT 2457
Query 2385 TTTATTCTT-CTCGTTTCAACCTTCAAATATATAAATTTTCCATT-CGTTGTTAGGAACT 2442
||||| ||| | ||||||| |||| ||||||||||||||||||| | ||||||||| ||
Sbjct 2458 TTTATCCTTTCCCGTTTCAGCCTTTGAATATATAAATTTTCCATTTC-TTGTTAGGATCT 2516
Query 2443 AATTAATTCTTCGTACAAGAAATGATGTGGAAAATAGATGATAAAAAGGGTTTCAAATT 2501
|||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 2517 AATT----CTTCGTATGAGACATGATATGGAAAATAGATGATAAAAAGGGTTTCAAATT 2571
> AT2G47320.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr2:19427372-19428933 FORWARD
LENGTH=844
Length=844
Score = 62.1 bits (33), Expect = 3e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Minus
Query 2466 GATGTGGAAAATAGATGATAAAAAGGGTTTCAAATT 2501
||| ||||||||||||||||||||||||||||||||
Sbjct 844 GATATGGAAAATAGATGATAAAAAGGGTTTCAAATT 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124113016982
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5