BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483915
Length=411
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47380.1 | Symbols: | Cytochrome c oxidase subunit Vc famil... 534 2e-151
AT2G47390.1 | Symbols: | Prolyl oligopeptidase family protein ... 78.7 4e-14
> AT2G47380.1 | Symbols: | Cytochrome c oxidase subunit Vc family
protein | chr2:19440955-19442053 FORWARD LENGTH=422
Length=422
Score = 534 bits (289), Expect = 2e-151
Identities = 310/319 (97%), Gaps = 5/319 (2%)
Strand=Plus/Plus
Query 1 ATTCGTTCCGGTCGTCGTCT--ACCTCCACACTCCGACTTGGTTGAGAAGAAGAAAGAAG 58
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTCGTTCCGGTCGTCGTCTACACCTCCACACTCCGACTTGGTTGAGAAGAAGAAAGAAG 60
Query 59 AGATGGCAGGACACAAGGTTGCACATGCGACATTGAAAGGGCCTAGCGTTGTCAAGGAGT 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGATGGCAGGACACAAGGTTGCACATGCGACATTGAAAGGGCCTAGCGTTGTCAAGGAGT 120
Query 119 TAGTTATTGGTTTGGCACTCGGTTTAGCTGCTGGTGGTCTTTGGAAGATGCACCATTGGA 178
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATTTATCGGTTTGGCACTCGGTTTAGCTGCTGGTGGTCTTTGGAAGATGCACCATTGGA 180
Query 179 ACGAACAGAGGAAAACCAGAACTTTCTATGACTTGCTTGAGAGAGGTGAGATCAGTGTTG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACGAACAGAGGAAAACCAGAACTTTCTATGACTTGCTTGAGAGAGGTGAGATCAGTGTTG 240
Query 239 TAGCTGCTGAAGAGTAATTAAGCCGCTCAAAAACTGGTTCCTGAAGACTATGTTTGATTT 298
|||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 241 TAGCTGCTGAAGAGTAATTAAGCCGCTCAATAACTGGTTCCTGAAGA-T-TGTTTGATTT 298
Query 299 CCATTTCTGT-TTGTTTTT 316
|||||||||| || |||||
Sbjct 299 CCATTTCTGTCTTTTTTTT 317
Score = 78.7 bits (42), Expect = 4e-14
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 364 AATTCAAATGTGATGTTCATTCAGACATAATCTCTCTTGTTTTGTTTC 411
|||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 374 AATTCAGATGTGATGTTCATTCAGACATAATCTCTTTTGTTTTGTTTC 421
> AT2G47390.1 | Symbols: | Prolyl oligopeptidase family protein
| chr2:19441992-19446365 REVERSE LENGTH=3284
Length=3284
Score = 78.7 bits (42), Expect = 4e-14
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 364 AATTCAAATGTGATGTTCATTCAGACATAATCTCTCTTGTTTTGTTTC 411
|||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 3271 AATTCAGATGTGATGTTCATTCAGACATAATCTCTTTTGTTTTGTTTC 3224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19453618863
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5