BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483917
Length=601
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47400.1 | Symbols: CP12-1, CP12 | CP12 domain-containing pr... 841 0.0
> AT2G47400.1 | Symbols: CP12-1, CP12 | CP12 domain-containing
protein 1 | chr2:19446854-19447438 FORWARD LENGTH=585
Length=585
Score = 841 bits (455), Expect = 0.0
Identities = 556/602 (92%), Gaps = 18/602 (3%)
Strand=Plus/Plus
Query 1 AAAAATCTCTCCTCCTCCATCAAAATCCTCCAACGATGACAACCATAGCTGCAACTGGTC 60
||||| || | |||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 1 AAAAAACTTTTCTCCTCCATCAAAATCCTCCGACGATGACAACCATAGCTGCAGCTGGCC 60
Query 61 TCAACGTCGCGACTCCACGAGTGGTCGTTCGACCGGCGGCTCTTGTATCCGGTCCGGTCC 120
|||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||
Sbjct 61 TCAACGTCGCGACTCCACGAGTGGTCGTTCGACCTGTGGCTCGTGTATTAGGTCCGGTCC 120
Query 121 GGTTGAATTACCCGTGGAAATTCGGTTCGATGAAGCGGATGGTTGTGGTTAAGGCGACAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 GGTTGAATTACCCGTGGAAATTCGGTTCGATGAAGCGGATGGTTGTGGTTAAGGCTACAT 180
Query 181 CGGAAGGAGGGATATCGGATAAGGTGGAGAAGAGTATACAAGAAGCCAAGGAGACATGCG 240
||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 181 CGGAAGGAGAGATATCGGAGAAGGTGGAGAAGAGTATACAAGAAGCTAAGGAGACATGCG 240
Query 241 CAGATGATCCGGTGAGCGGCGAGTGTGTGGCGGCGTGGGACGAGGTGGAGGAGCTGAGTG 300
| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 241 CTGATGATCCGGTGAGCGGGGAGTGTGTAGCGGCTTGGGACGAGGTGGAGGAGCTGAGTG 300
Query 301 CGGCGGCGAGTCATGCTAGGGACAAGAAGAAAGCTGGTGGCTCCGATCCTTTGGAAGAGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGGCGGCGAGTCATGCTAGGGACAAGAAGAAAGCTGGTGGCTCCGATCCTTTGGAAGAGT 360
Query 361 ATTGCAGTGATAATCCTGAGACTGATGAGTGTCGTACTTATGATAATTaaaaaaaaaaTT 420
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 361 ATTGCAATGATAATCCTGAGACTGATGAGTGTCGTACTTATGATAATTAAAAAATA--T- 417
Query 421 TGTTTTTGATGTTCGAATTATGAAAGTTTAGGTATGGTCGTCAGATCGAtgtttgttctt 480
|||||||||||||||||||||||| ||||||||||| ||| || | | || ||||||
Sbjct 418 -GTTTTTGATGTTCGAATTATGAAACTTTAGGTATGGA--TCA-AT-G-T-TT-GTTCTT 469
Query 481 cttgtcc-ttgtcgttgtgtttgtgtttttggtttggttgatgattgtAATGTGATAAAT 539
||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CTTGTCCCTTGTTGTTATGTTTGTGTTTTTGGTTTGGTTGATGATTGTAATGTGATAAAT 529
Query 540 GAATATGAATATGAATAGTACAATACACAACATATGTTTCAAAATTTGTTTTGTTCGATT 599
||||||||||| | || ||||||||||||||||||||| ||| ||||| ||||||||
Sbjct 530 GAATATGAATA-G--TA---CAATACACAACATATGTTTCATAATGTGTTTGGTTCGATT 583
Query 600 AC 601
||
Sbjct 584 AC 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28934868672
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5