BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483920
Length=3608
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kin... 5210 0.0
> AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kinase
| chr2:19459045-19464087 REVERSE LENGTH=3677
Length=3677
Score = 5210 bits (2821), Expect = 0.0
Identities = 3340/3590 (93%), Gaps = 37/3590 (1%)
Strand=Plus/Plus
Query 2 TTGCTCCGAGGAAGAAGAAGTGAGAATAAGAAAAGTGTTTTTTAGGGTTTATCATTCTCC 61
||||||||||||||||| | | |||| |||||| | ||||||||||||||||||||||
Sbjct 35 TTGCTCCGAGGAAGAAG-A-T---AATATGAAAAGAGCTTTTTAGGGTTTATCATTCTCC 89
Query 62 TTGACTTTACAAAACGTGAAATCAGCTTC-TCTCTTCGCA-GACTGATCAAGACAGAAAT 119
|||||||| |||||||||||||||||||| || ||| | | |||| ||||||||||||||
Sbjct 90 TTGACTTTGCAAAACGTGAAATCAGCTTCTTC-CTT-GGAGGACTAATCAAGACAGAAAT 147
Query 120 CTGTTCTTCTGAAAACGATAGCCGCTCTAGGTAATCAATCAAATGATGGTGAAAGTTACA 179
|||||| ||| |||||||| |||| |||| || ||| ||||||||||||||||||||||
Sbjct 148 CTGTTCCTCTAAAAACGATCGCCGTTCTA-GT--TCACTCAAATGATGGTGAAAGTTACA 204
Query 180 AAGCTTGTGGCTTCACGTCCAATTGTGGTCTTTTGCGTCCTGGCATTTTTGGTGGTTGTT 239
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 205 AAGCTTGTGGCTTCACGTCCAATTGTGGTCTTTTGCGTCCTGGCATTCCTGGTGGTTGTT 264
Query 240 TTTGGGTGCATAACGATCTCGGAGTGGCGAACAACAACGGATAACGTAGCCAAAGACGTC 299
|| | |||||| |||||| | ||||||||||||||||| ||| ||| |||||| |||
Sbjct 265 TTCGAGTGCATTTGGATCTCAAATTGGCGAACAACAACGGAGAACCTAGTCAAAGAGGTC 324
Query 300 GCTTCATTTACCAAAGATCTCCGGACAAGTATAGTTTCCGAGATTGAAAACATCGGAAAA 359
|||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 325 GCTTCATTTACCGAAGATCTCCGGACAAGTCTAGTTTCGGAGATTGAAAACATCGGAAAA 384
Query 360 TTCACATATCCCAAGACAAACTTATCTACAATCGGCTTAGCGAGAGTTATAGATTCTTAT 419
|| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 385 TTTACATATGCCAAGACAAACTTATCTACGATCGGTTTAGCGAGAGTTATAGATTCTTAT 444
Query 420 CTCACCAACAACGACACTGGTTTCGCAGAGATTCAAACACAGATTGCACCATTGTTGTTT 479
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 445 ATCACCAACAACGACACTGGTTTTACAGAGATTCAAACACAGATCGCACCATTGTTGTTT 504
Query 480 GAAGCTTATTCAACGATCCCTCAAGTCTCACAAGTTTCCTACATTAGTAGGGACGGTCTC 539
| ||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||
Sbjct 505 GTAGCTTATTCAACGATCCTTCAAGTCTCACAAGTTTCGTACATCAGTAGGGACGGTCTC 564
Query 540 TTCTTTTCTTACATTGCAGAATCAAACACAAGTGTCGCTGTTTTTGCCAATTCGTCGTCA 599
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 565 ATGTTTTCTTACATTGCAGAATCAAACACAAGTGTCGCTGTTTTTGCCAATTCCTCGTCG 624
Query 600 AATTCAAGTGGTGGAGACTACACTTGGTACACTCAAAACATTGATCAATTAACCGGTCGT 659
||||||||| ||||||||||||||||||||||||||| | | ||||| ||||| ||||||
Sbjct 625 AATTCAAGTCGTGGAGACTACACTTGGTACACTCAAACCGTGGATCAGTTAACTGGTCGT 684
Query 660 CTCAACGGGAACGCAACGAAATCTCAGCCGTTAGATTTAACCCATACAGATTGGTTCCAA 719
|| ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 685 CTTAACGGGAACTCAACGAAATCTCAGTCGTTAGATGTAACCCATACAGATTGGTTCCAA 744
Query 720 GCAGCACAAAGTAATAATTACACTACCA-CCTTTCTAGGAACGAGTTTGGGAGAAAAAGA 778
|||||||| |||||||| ||||||| || ||||| |||||||||| ||||||| | ||||
Sbjct 745 GCAGCACAGAGTAATAACTACACTA-CAGCCTTTGTAGGAACGAGCTTGGGAGGAGAAGA 803
Query 779 TAACGAGACTCTGATTCAGAGCGTGGTTAGCTTGTACAACAAGAAAGGTCTTGTTTCGCT 838
|||||||||||| || |||||||||||||||||||||| |||||||||||||||||| |
Sbjct 804 TAACGAGACTCTAATACAGAGCGTGGTTAGCTTGTACAGCAAGAAAGGTCTTGTTTCTTT 863
Query 839 AGGGTTTCCGGTTAAGACTTTAACCGATGTTTTGAACAGTTTGAATCTACACGGCGAAGA 898
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 864 AGGGTTTCCGGTTAAGACTTTAACCGAAGTTTTGAACAGTTTGAATCTACACGGCGAAGA 923
Query 899 GCTTTACATGTGGACAAAGGACGGGACGGTACTTGTTCGTGAAGGTTCACTGAATGCTTC 958
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 924 GCTTTACATGTGGACAAAGGACGGGACGGTGCTTGTTCGTGAAGGTTCACTGAATGATTC 983
Query 959 TCTCTTTATCTCCAATGGCTCGATATGCTTTGGTAGAGATTCTAAATCCGTCTGGTCTCA 1018
| |||| ||||||||||||||||| ||||| |||||||| || || ||| ||||||||||
Sbjct 984 TTTCTTCATCTCCAATGGCTCGATTTGCTTCGGTAGAGAATCGAACTCCCTCTGGTCTCA 1043
Query 1019 ATGCATCTCTGAAAATTGCAGTACCATTGGCTACAAGGTGGAGATCAAAAGATCAACATA 1078
||||||| |||||||||||||| ||| ||||||| |||||||||||||||||| || |||
Sbjct 1044 ATGCATCCCTGAAAATTGCAGTTCCAGTGGCTACGAGGTGGAGATCAAAAGATTAAGATA 1103
Query 1079 TCAAGCTTTTTGCTCTGTTCTTGAAGTTTCGGGTGTTCCTCTGAGATACACACTCATGTT 1138
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1104 CCAAGCTTTTTGCTCTGTTATTGAAGTTTCGGGCGTTCCTCTGAGATACACACTCATGTT 1163
Query 1139 TCCCAACGAAGGAGGAGCAACACGAATCAAGCACCAAGCGGATAAGGCAATGTATCAACT 1198
||||||| |||||||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 1164 TCCCAACAAAGGAGGAGCAACACGCATCAAGCACCAAGCGGAAAAGGCAAAATATCAACT 1223
Query 1199 TATTGTGGTTGTGATATTTCTTGGCTTGGGTTGGCCTGTATGGTTTGTGTGGTTTATGAT 1258
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1224 TATTGTGGTTATGATATTTCTTGGCTTCGGTTGGCCTGTATGGTTTGTGTGGTTTATGAT 1283
Query 1259 GCAAGCAACAAGGAGAGAGATGCGTATGCGTGCAATGCTGATAAACCAAATGGAAGCAAC 1318
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 1284 GCAAGCAACAAGGAGAGAGATGCATATGCGTGCAACGCTGATAAACCAAATGGAAGCGAC 1343
Query 1319 ACAACAGGCTGAGCGAAAGAGCATGAACAAGAGTCAAGCATTTGCAAATGCTAGCCACGA 1378
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 ACAACAAGCTGAGAGAAAGAGCATGAACAAGAGTCAAGCATTTGCAAATGCTAGCCACGA 1403
Query 1379 TATTAGAGGTGCCCTTGCAGCGATGAAAGGTCTGATAGATATATGTCGTGATGAAGTTAA 1438
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct 1404 TATTAGAGGTGCCCTTGCAGGGATGAAAGGTCTGATTGATATATGTCGTGATGGAGTTAA 1463
Query 1439 ACCTGGCTCCGACATAGACACCACTCTCAAGCAAGTGAATGCTTGCTCCAAGGATTTGGT 1498
||||||||||||| |||||||||||||||| |||||||||| |||| |||||||||||||
Sbjct 1464 ACCTGGCTCCGACGTAGACACCACTCTCAACCAAGTGAATGTTTGCGCCAAGGATTTGGT 1523
Query 1499 TGTTCTGCTCAACTCTGTTTTGGACATGAGCAAAATCGAAAGCGGGAAGATGCAGTTAGT 1558
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 TGCTCTGCTCAACTCTGTTTTGGACATGAGCAAAATCGAAAGCGGGAAGATGCAGTTAGT 1583
Query 1559 GGAAGAAGATTTCAACTTGTCGAAACTTCTTGAAGACGTTACCGATTTTTACCATCCCGT 1618
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1584 GGAAGAAGATTTCAACTTGTCGAAACTTCTTGAAGACGTCATCGATTTTTACCATCCCGT 1643
Query 1619 TGCGATGAAGAAAGGGGTTGATGTAGTTTTGGATTCACACGATGGCTCAATTTTCAAATT 1678
|||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 1644 TGCGATGAAGAAAGGGGTTGATGTAGTTTTGGATCCGCACGATGGCTCGGTTTTCAAATT 1703
Query 1679 CTCGAATGTGA-GAGGGGATAGTGGCAAACTGAAGCAGATTCTCAACAATCTTGTCAGCA 1737
||||||||| | ||||||||||||||| ||||||||||||||| ||||||||||| ||||
Sbjct 1704 CTCGAATGT-ACGAGGGGATAGTGGCAGACTGAAGCAGATTCTGAACAATCTTGTTAGCA 1762
Query 1738 ATGCTGTCAAATTCACAGTCGACGGGCACATTTTGATCAGAGCTTGGGCTCAGAGGCCAG 1797
|||||||||| ||||| ||||||||||||||| | | ||||||||||||||||||||||
Sbjct 1763 ATGCTGTCAAGTTCACCGTCGACGGGCACATTGCGGTAAGAGCTTGGGCTCAGAGGCCAG 1822
Query 1798 GTTCCAAAAGCTCTGTGATCCTTGCATCAGACCCTCAAGGTGTGTCCAAGTTTTTAAAGA 1857
||||||| ||||||||| ||||||||||| | ||| ||||||||||||||||| ||||||
Sbjct 1823 GTTCCAATAGCTCTGTGGTCCTTGCATCATATCCTAAAGGTGTGTCCAAGTTTGTAAAGA 1882
Query 1858 GTATGTTATGCAAGAATAAAGACCAGTCATCAAACTACGA-AGCAGAAATTTCGAATTCC 1916
||||||| |||||||||||||| ||||||||| |||||| | ||||||| |||||||||
Sbjct 1883 GTATGTTCTGCAAGAATAAAGAAGAGTCATCAACCTACGAGA-CAGAAATATCGAATTCC 1941
Query 1917 ATAAGAAACAATGCCAACACGATGGAGTTTGTGTTTGAAGTGGATGATACAGGTAAAGGG 1976
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1942 ATAAGAAACAATGCAAACACGATGGAGTTTGTGTTTGAAGTGGATGATACTGGTAAAGGG 2001
Query 1977 ATACCTATGGAGATGCGTAAATCGGTGTTTGAAAACTATGTTCAAGTAAGAGAAACAGCT 2036
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2002 ATACCTATGGAGATGCGTAAGTCGGTATTTGAAAACTATGTTCAAGTAAGAGAAACAGCT 2061
Query 2037 CAAGGACAACAAGGGACTGGTTTAGGGCTTGGGATTGTGCAGTCTTTGGTACGATTAATG 2096
|||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 2062 CAAGGACACCAAGGAACTGGTTTAGGGCTCGGGATTGTGCAGTCTTTGGTAAGATTAATG 2121
Query 2097 GGAGGGGAGATAAGAATCACAGACAAGGCCATGGGGGAGAAAGGAACATGTTTCCAATTC 2156
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2122 GGAGGGGAGATAAGAATCACCGACAAGGCCATGGGAGAGAAAGGAACATGTTTCCAATTC 2181
Query 2157 AATGTTTTATTGACAACATTAGAGTCTCCTCCAGTGAGTGACATGAAAGTGAGACCAG-A 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2182 AATGTTTTATTGACAACATTAGAGTCTCCTCCAGTGAGTGACATGAAAGTGAGAC-AGGA 2240
Query 2216 TATTC-AAGCAGGAGGCGATTACATATCCACGCCAGACCTCGGGCTAACTATAAACACTT 2274
|| | |||||||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct 2241 GAT-CGAAGCAGGAGGCGATTATGTATCCACGCCAAACCTCGGGCTGACTATAAACACTT 2299
Query 2275 CACTGGGAGGTAGCATGAATATACGCAACCTGAGTCCTAGATTCAACAATTGTCTCAGCT 2334
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2300 CACTTGGAGGTAGCATGAATATACGTAACCTGAGTCCTAGATTCAACAACTGTCTCAGCT 2359
Query 2335 CAAGTCCGAAGCAAGAATGTTCTAGAGTGGTTCTCCTATTGAAAAATGAAGAACGTAGGA 2394
||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| || |
Sbjct 2360 CAAGTCCAAAGCAAGAAGGTTCTAGAGTGGTTCTTCTATTGAAAAATGAAGAACGCAGAA 2419
Query 2395 GAGTTACCGAGAAATACATAAAGAATCTTGGGATTAAAGTTACAATGGTGGAGAAATGGG 2454
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2420 GAGTTACAGAGAAATACATAAAGAATCTTGGGATTAAAGTTACAGTGGTGGAGAAATGGG 2479
Query 2455 AGCATTTGAGTTATGCCTTGGAGAGACTTTTTGGATTTTCACCTCAGAGTTCCATGGGAA 2514
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2480 AGCATTTGAGTTATGCTTTGGAGAGACTTTTTGGATTTTCACCTCAGAGTTCCATGGGAA 2539
Query 2515 GAGCAGAGAGTAGTTTGTCATGTCCAAGCTCAAGAGAGTTACCTTTGATTGGCATGGATG 2574
|||||||| |||||||||||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct 2540 GAGCAGAGTGTAGTTTGTCATGTCCGAGCTCAAGGGAGTTACCTTTCATTGGCATGGACG 2599
Query 2575 GTATTGATTCAAGAAGCCAACTTCCTAAAAGGAGAAGCACCAGTTTCTCTGCAGTTGTCC 2634
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2600 GTATTGATTCAAGAAGCCAACTTCCTAAAAGGAGAAGCATCAGTTTCTCTGCAGTTGTCC 2659
Query 2635 TTCTGGTGATTGATGCAAAAACTGGACCACTTCTTGAGCTTTACGATATTGTCAAACAGT 2694
|| |||||||||||||||||||||||||| || ||||||| | |||||||||||||||||
Sbjct 2660 TTTTGGTGATTGATGCAAAAACTGGACCATTTTTTGAGCTGTGCGATATTGTCAAACAGT 2719
Query 2695 TTCGTAAAGGCTTGCCCCATGGAATAACCTGTAAAGTTGTTTGGCTTAACGAATCGAGCA 2754
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2720 TTCGTAGAGGCTTGCCCCATGGAATATCCTGTAAAGTTGTTTGGCTTAACGAATCGAGCA 2779
Query 2755 CTCGTGTAAGTGAGAGAGGGGACATTAGTTGTTCGAGGCCCTTGCACGGATCACGTCTTA 2814
||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 2780 CTCGTGTAAGTGAGAGAGGGGACATTAGTTGTTCGAGACCTTTGCACGGATCGCGTCTTA 2839
Query 2815 TGGAAGTCTTGAAGATGTTGCCTGAATTTGGAGGAACTGTGCTAAAAGAAACACCTACTG 2874
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2840 TGGAAGTCTTGAAGATGTTGCCTGAATTTGGAGGAACTGTGCTAAAAGAACCACCTACTG 2899
Query 2875 AGCTGCAAAGGGAATCACTGCTGAGACATTCTTTTGTTGCAGAGAGATCACCAAAACATA 2934
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2900 AGCTGCAAAGGGAATCATTGCTGAGACATTCTTTTGTTGCAGAGAGATCACCAAAACATA 2959
Query 2935 AATTCCAAGAAGAAGGACCATGCTCAATGTTTAACAAAAAGTTAGGTAAGACGATAATGG 2994
|| |||||||||| || ||| ||||||||||||||||||| |||||||||| ||||||||
Sbjct 2960 AAGTCCAAGAAGAGGGGCCAAGCTCAATGTTTAACAAAAAATTAGGTAAGAGGATAATGG 3019
Query 2995 CACCAACAGCTTCAGAGAGCGAGACTAGGATCAAGTCAGTGAGTAGTGGTCAAAAGCCTA 3054
|| |||||| ||||||||| ||||||||| ||||||||||| ||| |||| ||||||||
Sbjct 3020 CATCAACAGATTCAGAGAGTGAGACTAGGGTCAAGTCAGTGCGTACCGGTCGAAAGCCTA 3079
Query 3055 TTGGAAACCCAGAGGACGAGGAAG-GAACTTCCAAGCCGAGTGACGATGAATTCTTAAGA 3113
|||| ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 3080 TTGGGAACCCAGAGGACGAGCAAGAGA-CTTCCAAGCCGAGTGACGATGAATTCTTAAGA 3138
Query 3114 GGAAAGAGAGTTCTTGTGGTCGATGATAACTTTTTAACACGTAAAGTTGCAACAGGAAAG 3173
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 3139 GGAAAGAGAGTTCTTGTGGTCGATGATAACTTTATATCACGTAAAGTTGCAACAGGAAAG 3198
Query 3174 CTGAAGAAGATGGGAGTTTCCGAGGTCTTACAATGCGACAGTGGAAAAGAAGCTTTGAGA 3233
||||||||||||||||| || |||||| ||||||||||||||| |||||||||||||||
Sbjct 3199 CTGAAGAAGATGGGAGTCTCAGAGGTCGAACAATGCGACAGTGGGAAAGAAGCTTTGAGA 3258
Query 3234 TTAGTCACTGAAGGGCTTACACAAAAAGAAGAACAATGTTCAGTAAATAAGCTTCCGTTT 3293
||||||||||||||||||||||||| |||||||||| |||||||| |||| |||||||||
Sbjct 3259 TTAGTCACTGAAGGGCTTACACAAAGAGAAGAACAAGGTTCAGTAGATAAACTTCCGTTT 3318
Query 3294 GACTACATATTCATGGACTGCCAAATGCCAGAAATGGATGGATATGAAGCAACTAGAGAG 3353
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3319 GACTACATATTCATGGACTGCCAAATGCCAGAAATGGATGGCTATGAAGCAACTAGAGAG 3378
Query 3354 ATTAGGAAAGTGGAGAGAAGTTATGGGGTGCGTATACCAATTATAGCGGTATCTGGTCAT 3413
|||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 3379 ATTAGGAAAGTGGAGAAAAGTTATGGGGTGCGTACACCAATTATAGCTGTATCTGGTCAT 3438
Query 3414 GATCCTGGTTCAAGAG-AAGCAAGAGAAACCGTTCAAGCTGGGATGGACGCCTTCTTAGA 3472
|||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 3439 GATCCTGGTTCA-GAGGAAGCAAGAGAAACCATTCAAGCTGGAATGGACGCCTTCTTAGA 3497
Query 3473 TAAAAGCTTGAATCAACTTGCAAACGTCATTAGAGAAATCGAGAGCAAGACGACTACTCT 3532
|||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |
Sbjct 3498 TAAAAGCTTGAATCAACTTGCAAACGTCATTAGAGAAATCGAAAGCAA-ACG--T-C--- 3550
Query 3533 GCACTAGTATTGTATAAGTTGACAGTATGCAGCATTT-TGCTAGTACCAT 3581
||||||||||||||||| ||||| | ||||| ||| ||||| ||||||
Sbjct 3551 --ACTAGTATTGTATAAGTAGACAGCACGCAGC-TTTGTGCTACTACCAT 3597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 179647822883
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5