BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483921
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47440.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2566 0.0
> AT2G47440.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:19469719-19471886 FORWARD LENGTH=2000
Length=2000
Score = 2566 bits (1389), Expect = 0.0
Identities = 1660/1783 (93%), Gaps = 50/1783 (3%)
Strand=Plus/Plus
Query 1 AAGCTGTCATC--TCTCTCTC-TTCCTTATAGGGCTCTGTTTCTCTCCACATTCACACAC 57
||||||||||| |||||||| |||||||||| |||||||||||||||||||| |||||
Sbjct 14 AAGCTGTCATCTATCTCTCTCTTTCCTTATAGTGCTCTGTTTCTCTCCACATT--CACAC 71
Query 58 ACAGTGTCCCTCTCTCTCTCCACATTATTAAATCACTTG-TGAAG-----C----AAGGA 107
|| | ||||||||||||| | ||||||||||||||||| || | | |
Sbjct 72 AC--TCTCCCTCTCTCTCT-C-CATTATTAAATCACTTGTTGTTGTCTTTCTTTTTTCAA 127
Query 108 A-TTTCG-AG--ATTTCttttttttGATGATGATTTAATCGAAAGCTTCTTCCTCCAAAC 163
| || | || | || ||||| |||||||||||||||||||||||||||||||||
Sbjct 128 ACCTTGGAAGCAAGGAATTCTTTTT--TGATGATTTAATCGAAAGCTTCTTCCTCCAAAC 185
Query 164 AAACATCAATGGCGG---------ACGTTAATGGCGATAAGAAGCACTGGTGGTTCAGTC 214
||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 186 AAACATCAATGGCGGTTTATCCTAACGTTAATGGCGATAAGAAGCACTGGTGGTTCACTC 245
Query 215 ACAGGAAGCTTGTTGATAAGTATATCAAGGATGCAACAACTTTAATGGCAAGTGAGGAGG 274
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 246 ACAGAAAGCTTGTTGATAAGTATATAAAGGATGCAACAACTTTAATGGCAAGTGAGGAGG 305
Query 275 CAAACGACGTCGCTTCTGCTCTTCATTTACTAGACGCTGCGTTATCCATATCCCCGCGTT 334
|||||||||||||||| |||||||||||||||||||| || ||||| || ||||||||||
Sbjct 306 CAAACGACGTCGCTTCAGCTCTTCATTTACTAGACGCAGCCTTATCTATCTCCCCGCGTT 365
Query 335 TGGAAACTGCGTTAGAGCTTAAGGCTAGATCTCTGCTCTTCCTCCGTCGTTTCAAGGATG 394
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 366 TGGAAACTGCGTTAGAGCTCAAGGCTAGATCTCTCCTCTTCCTCCGTCGTTTCAAGGATG 425
Query 395 TCGCCGATATGCTTCAGGATTATATCCCCAGTCTTAAACTCTCCCTCACCGACGAAGAAG 454
|||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 426 TCGCCGATATGCTTCAGGATTATATCCCCAGTCTTAAA------CT---CGACGACGAAG 476
Query 455 GATCCGCTTCTTCTCAA---TCCTCTTCCTCCGACGG-ACTCAACCTTCTCTCCGACGCC 510
||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||
Sbjct 477 GATCCGCTTCTTCTCAAGGCTCTTCTTCCTCCGACGGTA-TCAACCTTCTCTCCGACGCC 535
Query 511 TCCTCGCCGGGCTCGTTTAAATGCTTCTCTGTCTCCGACTTGAAGAAGAAAGTCATGGCA 570
|| || || ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 536 TCTTCCCCTGGCTCCTTTAAATGCTTCTCTGTTTCCGACTTGAAGAAGAAAGTCATGGCA 595
Query 571 GGGATTTGTAAAAAATGCGACAAACAAGGGCAATGGAGGTATGTAGTGTTGGGTCAAGCT 630
|| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 596 GGCATTTGTAAAAAATGCGACAAAGAAGGGCAATGGAGGTATGTGGTGTTGGGTCAAGCT 655
Query 631 TGTTGCCATCTAGGACTAATGGAGGATGCGATGGTTCTGCTTCAAACCGGTAAACGCCTC 690
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 656 TGTTGCCATCTAGGACTAATGGAGGATGCCATGGTTCTCCTACAAACCGGTAAACGCCTC 715
Query 691 GCCTCCGCCGAGTTCCGTCGCCGGAGTATTTGCTGGTCTGACGATAGCTTCCTTCTCCTC 750
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 716 GCCTCCGCCGAGTTCCGTCGCCGGAGTATTTGCTGGTCCGACGATAGCTTCCTTCTCCTC 775
Query 751 TCCGAATCCTCCTCTACTTCTTCTCCACCACCGGAGAGCGAGAATTTCACCCATCTCCTC 810
||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 776 TCCGAATCCTCCTCTGCTTCTTCTCCACCACCCGAGAGCGAGAACTTCACCCATCTCCTC 835
Query 811 GCTCACATCAAGCTTCTTCTCCGTCGTCGCGCCGCTGCAATCGCCGCTCTCGACGCCGGA 870
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 836 GCTCACATCAAGCTTCTTCTCCGTCGTCGCGCCGCTGCAATCGCCGCTCTCGACGCTGGA 895
Query 871 CTGTTCTCCGAGTCGATCCGTCACTTCTCCAAGATCGTCGATGGTCGTCGCCCTGCGCCT 930
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 896 CTGTTCTCCGAGTCGATCCGTCACTTCTCCAAGATCGTCGATGGCCGTCGCCCTGCGCCT 955
Query 931 CAAGGATTCCTCGCCGAATGCTATATGCATCGAGCCGCCGCTTATAGATCCGCCGGTAGA 990
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 956 CAAGGATTCCTCGCCGAATGCTACATGCATCGAGCCGCCGCTTATAGATCCGCCGGTAGA 1015
Query 991 ATCGCGGAAGCGATCGCCGATTGCAATAAAACCCTAGCTCTTGAACCGTCGTGTATCCAA 1050
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1016 ATCGCGGAAGCGATCGCCGATTGCAATAAAACCCTAGCTCTTGAACCCTCGTGTATCCAG 1075
Query 1051 GCGTTGGAGACGAGAGCCGCGCTCCTGGAAACGGTGAGGTGTTTTCCAGATTCGCTTCAC 1110
||||| || || ||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 1076 GCGTTAGAAACCAGAGCCGCGCTTCTAGAAACGGTCAGGTGTTTTCCAGATTCGCTTCAC 1135
Query 1111 GATCTAGAACACTTGAAGCTTCTCTACAACACCATTTTACGCGATCGGAAGCTTCCAGGC 1170
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1136 GATCTAGAACACTTGAAGCTTCTCTACAACACCATTTTACGCGATCGGAAGCTTCCGGGT 1195
Query 1171 CCGGTGTGGAAGCGGCACAACGTGAAATACAGAGAAATTCCTGGGAAATTGTGCGTTTTG 1230
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1196 CCGGTGTGGAAGCGGCACAACGTGAAATACAGAGAGATTCCTGGGAAATTGTGCGTTTTG 1255
Query 1231 ACAACGAAAACGCAGAAACTTAAGCAGAAAATCGCAAACGGAGAAACTGGGAATGTCGAT 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ACAACGAAAACGCAGAAACTTAAGCAGAAAATCGCAAACGGAGAAACTGGGAATGTCGAT 1315
Query 1291 TATTACGGCTTGATCGGAGTCAGACGCGGATGCACCAGATCGGAGCTCGATCGAGCTCAT 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TATTACGGCTTGATCGGAGTCAGACGCGGATGCACCAGATCGGAGCTCGATCGAGCTCAT 1375
Query 1351 CTATTGCTGTGTCTCAGATACAAACCCGATAGAGCCTCGTCTTTCATCGAACGGTGCGAG 1410
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1376 CTATTGCTATGTCTCAGATACAAACCCGATAGAGCCTCTTCTTTCATCGAACGGTGCGAG 1435
Query 1411 TTCACCGATCAAAACGACGTCGATTCGGTTAGAGATCGAGCAAAAATGTCGTCTCTGTTG 1470
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1436 TTCACCGATCAAAACGACGTCGATTCGGTTAGAGATCGAGCCAAAATGTCGTCTCTGTTG 1495
Query 1471 CTTTACCGTTTGATTCAGAAAGGATACTCCGCCGTGACAGCGATCATAGCCGAGGAGCAG 1530
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1496 CTTTACCGTTTGATTCAGAAAGGATACACCGCCGTGACAGCGATCATAGCCGAGGAGCAG 1555
Query 1531 AGGAAGAGCACCATTGCTCACGCTCAAAAGATTGAAGAACGCAAACCGGTGGAAAAATCA 1590
||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1556 AGGAAGAACGCCATTGCTCACGCTCAAAAGATTGAAGAACGCAAACCGGTTGAAAAATCC 1615
Query 1591 G-TTCCCATCAAGATAACCGGAAACGCTGAACCGAAACCGGTAAATTCCAATGCGTACCA 1649
| ||| || |||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1616 GGTTCT-ATTAAGAGAACCGGAAACGCTGAAACGAAACCGGTAAATTCCAATGCGTACCA 1674
Query 1650 AGGAGTTTTCTGTAGAGATCTCGCTGCTGTTGGGAATCTACTAACCAGGGCTGGTTTTAA 1709
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1675 AGGAGTATTCTGTAGAGATCTCGCTGCGGTTGGGAATCTACTAACCAGGGCTGGTTTCAA 1734
Query 1710 CCATCCAATCCCGGTTAAATACGAAGCTCTCACTTGCTAAAAA 1752
||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1735 CCATCCAATCCCGGTTAAATACGAAGCGCTCACCTGCTAAAAA 1777
Score = 180 bits (97), Expect = 5e-44
Identities = 142/161 (88%), Gaps = 14/161 (9%)
Strand=Plus/Plus
Query 1753 CGTTTCCGTAGATTCGTCTTCGTACAGGAAAACAAATCATTCAGCCGTC----------A 1802
|||||||||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 1828 CGTTTCCGTAGATTCGTCTTCGGACAGAAAAACAAATCATTCAGCCGTCAAAAAAGAAAA 1887
Query 1803 -AAAATAAG-AAATATATATACATTTGATGTATGAATACAAATGAAACAAATGTATTTAT 1860
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1888 TAAAATAAGAAAATATATATACATTTGATGTATGAATACAAATGAAACAA-TGTATTTAG 1946
Query 1861 GTTTGGAAGATTATTCCA-CTACAGGAAATTTTTGTCACTT 1900
|||||||||||||||||| ||||| |||| |||||||||||
Sbjct 1947 GTTTGGAAGATTATTCCAACTACAAGAAAATTTTGTCACTT 1987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94075821330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5