BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483933
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47520.1 | Symbols: HRE2 | Integrase-type DNA-binding superf... 773 0.0
> AT2G47520.1 | Symbols: HRE2 | Integrase-type DNA-binding superfamily
protein | chr2:19502802-19503569 REVERSE LENGTH=684
Length=684
Score = 773 bits (418), Expect = 0.0
Identities = 541/595 (91%), Gaps = 30/595 (5%)
Strand=Plus/Plus
Query 1 CAAAAACGTCTTGTTCTAGTTTGGAGTTGGAAGC-------A-TTTaaa-aaaaaTGTGT 51
|||| ||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 26 CAAATACGTCTTGTTCTAGTTTGGAGTTGGAAGCGTAAAAAACAAAAAACAAAAATGTGT 85
Query 52 GGGGGAGCTATCATTTCTGATTTCATCTGGGCGAATTCTTCGTTGGCTGAGTCAGAACCG 111
|||||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 86 GGGGGAGCTATCATTTCTGATTTCATCTGGTCGAA-------AT--CTGAGTCAGAACCG 136
Query 112 AGTCAACTCGGCTCTGTTAGCAGCAGCAAGAAGCGTAAACCCGTCTCAGTTGA-TG-GGC 169
|||||||||||||||||||||||||| |||||||||||||||||||||| ||| || |
Sbjct 137 AGTCAACTCGGCTCTGTTAGCAGCAGGAAGAAGCGTAAACCCGTCTCAG-TGAGTGAAG- 194
Query 170 AAAGAGATGGGAAGCGAGAGAGGAAGAATCTGTACAGAGGGATAAGGCAGAGGCCATGGG 229
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 AAAGAGATGGGAAACGAGAGAGGAAGAATCTGTACAGAGGGATAAGGCAGAGGCCATGGG 254
Query 230 GTAAATGGGCAGCGGAGATTCGTGACCCGAGGAAAGGTGTACGTGTCTGGCTTGGCACAT 289
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 255 GCAAATGGGCAGCGGAGATTCGTGACCCGAGCAAAGGTGTACGTGTCTGGCTTGGCACAT 314
Query 290 TCAAAACCGCCGACGAAGCTGCTCGAGCCTACGACGTTGCAGCCATCAGAATCCGTGGCC 349
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 315 TCAAAACCGCCGACGAAGCTGCTCGAGCCTACGACGTTGCTGCCATCAAAATCCGTGGCC 374
Query 350 GGAAAGCCAAACTGAATTTCCCAAACACTCAAGTAGAAGAAG---CTGATACAAAACCAG 406
|||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 375 GGAAAGCCAAACTGAATTTCCCAAACACTCAAGTAGAAGAAGAAGCCGATACTAAACCAG 434
Query 407 GG---AATCAAAATGAGCAGGTTTCAGGAAA-CCAAGTAGAGAGCTTGTCGGAGGACCTG 462
|| ||||||||||||| | |||| ||||| ||||||||||||||| ||||||||||||
Sbjct 435 GGGGGAATCAAAATGAGCTGATTTC-GGAAAACCAAGTAGAGAGCTTATCGGAGGACCTG 493
Query 463 ATGGCGTTGGAGGATTACATGAGATGCTATCAGATTCCGTTTGCCGACGACCAATCGGCG 522
||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 494 ATGGCATTGGAGGATTACATGAGATTCTATCAGATTCCGGTTGCCGACGACCAATCGGCG 553
Query 523 ACTGATGTTGGAAATTTATGGAGCTATCAAGACTCCAACTAAATCTCTTATTTCC 577
|| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 554 ACCGATATTGGAAATTTATGGAGCTATCAAGACTCCAATTAAATCTCTTATTTCC 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5