BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483934 Length=512 Score E Sequences producing significant alignments: (Bits) Value AT2G47530.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 623 5e-178 > AT2G47530.1 | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr2:19504220-19504971 FORWARD LENGTH=674 Length=674 Score = 623 bits (337), Expect = 5e-178 Identities = 381/402 (95%), Gaps = 3/402 (1%) Strand=Plus/Plus Query 113 CCT-ACATGGCCATTGAAGGTTTCATCTTGTGCAAATATGGCTACAAAACCTACCCCATC 171 ||| |||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 157 CCTGACATCGCCATCGAAGGTTTCATCTTGTGCAAATCTGGCTACAAAACCTACCCCATC 216 Query 172 CAAGGGGCCAAGGTTAAGGTTGTGTGTCCTATCGTGGACTCACACGGAAAGCTAGTGGCT 231 ||||||| |||||||||||||||||||||| ||||||| ||| | ||||||||||||||| Sbjct 217 CAAGGGGGCAAGGTTAAGGTTGTGTGTCCTGTCGTGGATTCATATGGAAAGCTAGTGGCT 276 Query 232 AAGGTTACAATCTCTAGCTACCCAACGGACTTGAAGGGATACTTCTACTTCATCACGTAC 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 AAGGTTACAATCTCTAGCTACCCAACGGACTTGAAGGGATACTTCTACTTCATCACGTAC 336 Query 292 GGACTCTCCCACAAGGTGAAGAACATCAGTAGCTGCAAAGTGAAGCTCGAGAGCTCTCCG 351 |||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||| Sbjct 337 GGACTCTCACACAAGGTGAATAACATCAGCAGCTGCAAAGTGAAACTCGAGAGCTCTCCG 396 Query 352 GTCTACACGTGTAAGACTCCGACCAATGTCAACAAAGGTGTCACAGGAGCTCCACTCTCT 411 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 397 GTCTTCACGTGTAAGACTCCGACCAATGTCAACAAAGGTGTCACCGGAGCTCCACTCTCT 456 Query 412 CCCGAAAACTCCAAGTTCCTTAGCCACGACAACTTGACCCTCTACACCCTTGAACCTTTC 471 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 457 CCCGACAACTCCAAGTTCCTTAGCCACGACAACTTGACCCTCTACACCCTTGAACCTTTC 516 Query 472 TATTTTTCTA-TCCCCGTGGCTCCCAAACCCGTTTACTAGGG 512 ||||| || | ||| |||||||||||||||||||||||||| Sbjct 517 TATTTCTCAAGTCCA-GTGGCTCCCAAACCCGTTTACTAGGG 557 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24464029589 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5