BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483934

Length=512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G47530.1 | Symbols:  | Pollen Ole e 1 allergen and extensin ...   623    5e-178


> AT2G47530.1 | Symbols:  | Pollen Ole e 1 allergen and extensin 
family protein | chr2:19504220-19504971 FORWARD LENGTH=674
Length=674

 Score =  623 bits (337),  Expect = 5e-178
 Identities = 381/402 (95%), Gaps = 3/402 (1%)
 Strand=Plus/Plus

Query  113  CCT-ACATGGCCATTGAAGGTTTCATCTTGTGCAAATATGGCTACAAAACCTACCCCATC  171
            ||| |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  157  CCTGACATCGCCATCGAAGGTTTCATCTTGTGCAAATCTGGCTACAAAACCTACCCCATC  216

Query  172  CAAGGGGCCAAGGTTAAGGTTGTGTGTCCTATCGTGGACTCACACGGAAAGCTAGTGGCT  231
            ||||||| |||||||||||||||||||||| ||||||| ||| | |||||||||||||||
Sbjct  217  CAAGGGGGCAAGGTTAAGGTTGTGTGTCCTGTCGTGGATTCATATGGAAAGCTAGTGGCT  276

Query  232  AAGGTTACAATCTCTAGCTACCCAACGGACTTGAAGGGATACTTCTACTTCATCACGTAC  291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  277  AAGGTTACAATCTCTAGCTACCCAACGGACTTGAAGGGATACTTCTACTTCATCACGTAC  336

Query  292  GGACTCTCCCACAAGGTGAAGAACATCAGTAGCTGCAAAGTGAAGCTCGAGAGCTCTCCG  351
            |||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct  337  GGACTCTCACACAAGGTGAATAACATCAGCAGCTGCAAAGTGAAACTCGAGAGCTCTCCG  396

Query  352  GTCTACACGTGTAAGACTCCGACCAATGTCAACAAAGGTGTCACAGGAGCTCCACTCTCT  411
            |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  397  GTCTTCACGTGTAAGACTCCGACCAATGTCAACAAAGGTGTCACCGGAGCTCCACTCTCT  456

Query  412  CCCGAAAACTCCAAGTTCCTTAGCCACGACAACTTGACCCTCTACACCCTTGAACCTTTC  471
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  457  CCCGACAACTCCAAGTTCCTTAGCCACGACAACTTGACCCTCTACACCCTTGAACCTTTC  516

Query  472  TATTTTTCTA-TCCCCGTGGCTCCCAAACCCGTTTACTAGGG  512
            ||||| || | |||  ||||||||||||||||||||||||||
Sbjct  517  TATTTCTCAAGTCCA-GTGGCTCCCAAACCCGTTTACTAGGG  557



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24464029589


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5