BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483935
Length=623
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47540.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 928 0.0
> AT2G47540.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr2:19505860-19506598 FORWARD LENGTH=657
Length=657
Score = 928 bits (502), Expect = 0.0
Identities = 589/629 (94%), Gaps = 14/629 (2%)
Strand=Plus/Plus
Query 1 AAAAAATGGCCCAAACTTGTTCGATTTTCTTCATTCCCTACATGATGCTTCTCTTGTCTC 60
|||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||
Sbjct 37 AAAAAATGGCCCAAACTTGTTCGATTCTCTACATTCCCTACATGCTGCTTCTCTCGTCTC 96
Query 61 TGTTGGCCGCCGGAGTAGCCACAATCACCGACGGGGAACTGCTTTCCTCGATGGTTGGAG 120
|||| ||||||||| |||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 97 TGTTTGCCGCCGGAATAGCCACAATCACCGAGGGGGAACTGCTTTCCTCGATGATCGGAG 156
Query 121 TCCAAGGTCTCATCTACTGCAAACAAGGATCTAAGCTTACCCCTCTCCAAGGTGCAGTGG 180
|||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 157 TCCAAGGTCTCATCTACTGCAAACGAGGATCTAAGCTTACACCTATCCAAGGTGCAGTGG 216
Query 181 CGAGAGTGACATGTGAGAGAGCTGATGAATATGGTTACGAAGCGGAGGATGTGACGGTGC 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 217 CGAGAGTGACATGTGAGAGAACTGATGAATATGGTTACGAAGCGGAGGATGTGACGGTGC 276
Query 241 TTAGTCAAGCAACGGATGCGAAGGGTTATTTCTTGGCGACGCTTTCTTCGTCGGAGGTGA 300
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TTAGCCAAGCGACGGATGCAAAGGGTTATTTCTTGGCGACGCTTTCTTCGTCGGAGGTGA 336
Query 301 AGGATTATAAGAAGCAGGTGATGAAGATCAAAGAGTGTAGGGCGTTTCTTGAGCTTTCTC 360
||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 337 AGGATTATAAG-A--AGGTGATCAAGATCAAAGAGTGCAGGGCGTTTCTTGAGCTTTCTC 393
Query 361 CATCTGACACGTGTTCTTTCCCGACGGAGATCAACCGTGGAATCAGCGGAGCCATTCTCC 420
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 394 CATCTGACACGTGTTCTTTTCCGACGGAGATTAACCGTGGAATCAGCGGAGCCATTCTCC 453
Query 421 AAAACTATCGTCTCCTAGAAAACAAGCTTAAGATGAAGCTTTTCACCGTTGGCCCTTTCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AAAACTATCGTCTCCTAGAAAACAAGCTTAAGATGAAGCTTTTCACCGTTGGCCCTTTCG 513
Query 481 TCTTCTCGCCC-GAGGAAACTCACGACAAGTCTATCCCCAACGGCTACTAAATTTAACAA 539
||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 514 TCTTCTC-CTCTGAGGAAACTCAGGACAAGTCTATCCCCAACGGCTACTAAATTTAACAA 572
Query 540 TATAATGtttttttttt-tttttCAGTTTCTAATGCCCTAAATGGGTCCTATTGGCCCAT 598
| | | |||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 573 TGT--T-TTTTTTTTTTCTTTTTCAGTTTCTAATGCCCTAA-TGGGTCATATTGGCCCAT 628
Query 599 C-A--A-AATATATTTATGTATCTAGTGG 623
| | ||||||||||||||| ||||||
Sbjct 629 ATATCATAATATATTTATGTATTTAGTGG 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30040019906
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5