BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483936
Length=1855
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47550.1 | Symbols: | Plant invertase/pectin methylesterase... 2881 0.0
> AT2G47550.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr2:19508980-19511792 FORWARD LENGTH=1915
Length=1915
Score = 2881 bits (1560), Expect = 0.0
Identities = 1739/1825 (95%), Gaps = 14/1825 (1%)
Strand=Plus/Plus
Query 1 AAAACAAAATCCAAAAGATGTCTCAAAAACTCATGTTCTTGTTCACCCTTGCCTGCCTCT 60
|||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 28 AAAAAAAAAACCAAAGGATGTCTCAGAAACTCATGTTCTTGTTCACCCTTGCCTGCCTCT 87
Query 61 CCTTGTTACCATCTCTTTTTCTCTCCGCCGAAATACCGGCCATTGAAAATGCCGCTTCAC 120
||| ||||||||||| |||| |||||||| ||||||||||||||| ||||||| ||||||
Sbjct 88 CCTCGTTACCATCTCCTTTTATCTCCGCCCAAATACCGGCCATTGGAAATGCCACTTCAC 147
Query 121 CGTCAAATATATGTAGATTTGCGCCGGATCCATCTTATTGTAGATCGGTTCTTCCAAACC 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 148 CGTCAAATATATGTAGATTCGCGCCGGATCCATCTTATTGTAGATCGGTTCTTCCAAACC 207
Query 181 AGCCCGGAGATATATATTCCTACGGACGTTTCTCTCTCCGAAGGTCCCTCTCACGAGCCC 240
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 208 AGCCCGGAGATATATATTCCTACGGACGTTTGTCTCTACGAAGATCCCTCTCACGAGCCC 267
Query 241 GCCGGTTCATTTCGCTGATCGACGCTCAACTTGACCGGAAAGGCAAAGTGGCTGCTAAAT 300
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 268 GCCGGTTCATTTCGATGATCGACGCTGAACTTGACCGGAAAGGCAAAGTGGCTGCTAAAT 327
Query 301 CCACTGTAGGGGCTCTCGAAGACTGCAAATTCCTAGCCAGCCTGACTATGGACTACCTCC 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 CCACAGTAGGGGCTCTCGAAGACTGCAAATTCCTAGCCAGCCTGACTATGGACTACCTCC 387
Query 361 TCAGTAGCTCACAGACGGCTGATTCCACCAAAACGCTGTCGTTATCTAGGGCCGAGGATG 420
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 388 TTAGTAGCTCACAGACGGCTGATTCCACCAAAACACTGTCGTTATCTAGGGCCGAGGATG 447
Query 421 TTCATACATTTCTGAGTGCTGCCGTCACCAACGAACAGACTTGTCTTGAAGGACTAAAAT 480
||||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||
Sbjct 448 TTCATACATTTCTGAGTGCTGCCATCACCAATGAGCAGACTTGTCTTGAAGGACTTAAAT 507
Query 481 CAACGGCGTCTGAAAATGGTCTTTCCGGTGAACTTTTCAACGATACAAAACTCTATGGGG 540
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 508 CAACGGCGTCCGAAAATGGTCTTTCCGGTGATCTTTTCAACGATACAAAACTCTATGGGG 567
Query 541 TGTCTCTTGCCCTTTTCTCCAAAGGTTGGGTGCCAAGAAGGCAAAGATCGAGACCGATTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TGTCTCTTGCCCTTTTCTCCAAAGGTTGGGTGCCAAGAAGGCAAAGATCGAGACCGATTT 627
Query 601 GGCAACCACAAGCCAGCTTCAAAAAGTTTTTTGGTTTCCGTAACGGTAGATTACCGTTAA 660
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 628 GGCAACCACAAGCCAGGTTCAAAAAGTTTTTTGGTTTCCGTAACGGTAAATTACCGTTAA 687
Query 661 AGATGACGGAAAAAACACGTGCCATTTACAACACGGTGACTAGGAGAAAGCTTCTCCAAT 720
|||||||||||| |||||||| |||||||||| |||||||| ||||||||||||||||
Sbjct 688 AGATGACGGAAAGGGCACGTGCCGTTTACAACACCGTGACTAGAAGAAAGCTTCTCCAAT 747
Query 721 CTGATGTAGACGCCGTTCAGGTGAGCGACATTGTGACGGTGATTCAGAACGGGACGGGAA 780
| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 748 CGGATGCAGACGCCGTTCAGGTGAGCGACATTGTGACGGTGATCCAGAACGGGACGGGAA 807
Query 781 ACTTCACGACCATAAACGCCGCCATTGCAGCCGCGCCAAACAAAACTGACGGTAGTAACG 840
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 808 ACTTCACGACCATAAACGCCGCCATTGCAGCTGCACCAAATAAAACTGACGGTAGTAACG 867
Query 841 GTTACTTCTTGATCTACGTAACGGCGGGATTGTACGAGGAATACGTGGACA-TTCCCAAG 899
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 868 GTTACTTCTTGATCTACGTAACGGCGGGATTGTACGAGGAATACGTGGA-AGTTCCCAAG 926
Query 900 AGCAAGAGATATGTGATGATGATCGGTGACGGCATCAACCAAACGGTTATCACCGGAAAC 959
| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 927 AACAAGAGATATGTGATGATGATCGGTGACGGCATCAACCAGACCGTTATCACCGGAAAC 986
Query 960 CGGAGCGTCGTTGATGGATGGACCACTTTCAATTCCGCCACATTTATTCTATCAGGTCCC 1019
|||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 987 AGGAGTGTCGTTGATGGATGGACAACTTTCAATTCAGCCACATTTATTCTATCAGGTCCC 1046
Query 1020 AACTTTATTGGTGTAAACATAACAATCCGCAATACGGCAGGACCAACCAAAGGCCAAGCC 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 AACTTTATTGGTGTAAACATAACAATCCGCAATACGGCAGGACCAACCAAAGGCCAAGCT 1106
Query 1080 GTGGCATTGAGGAGTGGTGGAGATTTGTCTGTTTTCTATAGTTGTAGTTTTGAAGCCTAT 1139
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 1107 GTGGCATTGAGGAGTGGTGGGGACTTGTCTGTTTTCTACAGTTGTAGTTTTGAAGCCTAT 1166
Query 1140 CAAGACACCTTATACACACATTCTCTCAGACAGTTTTATCGTGAATGTGATGTATATGGT 1199
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1167 CAAGACACGTTATACACACATTCTCTCAGACAGTTTTATCGTGAATGTGATGTCTATGGT 1226
Query 1200 ACCGTTGATTTTATATTCGGTAATGCTGCAGTGGTATTACAAAGCTGTAATTTGTATCCA 1259
|| |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1227 ACTGTTGATTTTATATTTGGTAACGCTGCAGTGGTATTACAAAACTGTAATTTGTATCCA 1286
Query 1260 CGTCAACCTCGCAAAGGTCAATCGAACGAGGTTACGGCTCAAGGTCGTACCGATCCCAAC 1319
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1287 CGTCAACCTCGCAAAGGTCAATCGAACGAGGTTACGGCTCAAGGTCGTACTGATCCGAAC 1346
Query 1320 CAAAACACTGGAACGGCAATTCATGGTTGTACTATAAGACCGGCAGATGATTTGGCTACG 1379
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 CAAAACACTGGGACGGCAATTCATGGTTGTACTATAAGACCGGCAGATGATTTGGCTACG 1406
Query 1380 AGCAACTATACAGTGAAGACTTATCTTGGTCGACCATGGAAGGAATATTCTAGAACCGTT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AGCAACTATACAGTGAAGACTTATCTTGGTCGACCATGGAAGGAATATTCTAGAACCGTT 1466
Query 1440 GTTATGCAAACTTACATAGATGGGTTTCTAGAACCGACTGGTTGGAATGCATGGTCCGGT 1499
|| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||
Sbjct 1467 GTCATGCAAACTTACATAGACGGGTTTCTAGAACCGAGTGGTTGGAATGCATGGTCTGGT 1526
Query 1500 GATTTTGCATTGAGCACACTTTACTACGCGGAATACAATAATACCGGACCTGGTTCTGAC 1559
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1527 GATTTTGCATTGAGCACACTTTACTACGCGGAATATAATAATACCGGACCTGGTTCTGAC 1586
Query 1560 ACGACAAACCGAGTCACTTGGCCAGGTTATCACGTCATCAACGCTACTGATGCTTCCAAT 1619
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1587 ACGACAAACCGAGTCACTTGGCCTGGTTATCACGTCATCAACGCAACTGATGCTTCCAAT 1646
Query 1620 TTCACGGTGACCAATTTCCTTGTTGGTGAGGGTTGGATCGGACAAACCGGAGTGCCTTTC 1679
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1647 TTCACGGTCACCAATTTCCTTGTTGGTGAAGGTTGGATTGGACAAACCGGAGTGCCTTTC 1706
Query 1680 GTGGGTGGACTGATCGCATAATCAACCAACGTCCTTATACTATAT--GACATGTTAATTA 1737
|||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||
Sbjct 1707 GTGGGTGGACTGATCGCATAATCAACCAAC--C-TTATACTATATATGATATGTTAATTA 1763
Query 1738 GTTATATTAATTAGTATTTAATCATTCATGTGTTGtttttttAGTCAAATAATTATTTAG 1797
|||| | | ||| | || |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1764 GTTA-A--A-TTA-T-TT-AATCATTCATGTGTTGTTTTTTTAATCAAATAATTATTTAG 1816
Query 1798 TGGTGCCTGTTTCAATACGATTTGT 1822
||||||||| |||||||||||||||
Sbjct 1817 TGGTGCCTGATTCAATACGATTTGT 1841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91816796805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5