BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483937
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47560.1 | Symbols: | RING/U-box superfamily protein | chr2... 1098 0.0
> AT2G47560.1 | Symbols: | RING/U-box superfamily protein | chr2:19511717-19512728
REVERSE LENGTH=1012
Length=1012
Score = 1098 bits (594), Expect = 0.0
Identities = 685/729 (94%), Gaps = 5/729 (1%)
Strand=Plus/Plus
Query 2 CTCTTTAGAATTATGGGAATCGGAGAAGAAAGCACAAAGCCTATTTGGGGGAGCGTGAGC 61
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 100 CTCTTTAGTATTATGGGAATCGGTGAAGAAAGCACAAAGCCTATTTGGGGGAGCGTGAGC 159
Query 62 CACGCGCCTTCAGGCTACGCTCTCAACGGCAAAATCATGCTCTCCTCCGTGATCGTCCTC 121
||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 160 CACACGTCTTCAGGCTACGCTCTCAACGGCAAAATCATGCTCTCCTCCGTGATCGTTCTA 219
Query 122 TTCGTCGCCGTTATTATGATCCTCTGTTTCCACAGCTACGCCCGGTGGTTATTCCGTCGT 181
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 220 TTCGTCGCCGTTATTATGATCCTCTGCTTCCACAGCTACGCCCGTTGGTTATTCCGTCGT 279
Query 182 CAGAACCGTCGCATTCGCCGCCGTATTCGTGCTCATATCCGTACTCTCTCCGCCTCACCC 241
|| ||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 280 CACAACCGTCGCATTCGCCGCCGTATTCGTTCTCACCTCCGCACTCTCTCCGCCTCACCC 339
Query 242 CGCGACCAAGCTCTCGACCCGGCTGTTCTCGACAAGATTCCGATCTTCGTTTACTCCTCC 301
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 340 CGAGACCAAGCTCTCGACCAGGCTGTTCTCGACAAGATTCCGATCTTCGTTTACTCCTCC 399
Query 302 AAGAATCCACCACCACCCGAAGAGAAGGAGGAGTGCTCCGTCTGCTTGTCGGAGTTCGAG 361
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 AAGAATCCACCACCACCAGAAGAGAAGGAGGAGTGCTCCGTCTGCTTGTCGGAGTTCGAG 459
Query 362 GAAGAAGACGAAGGCCGTCTTCTCCCTAAATGTGGCCACTCTTTTCACGTCGATTGCATC 421
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 460 GAAGAAGACGAAGGCCGTCTTCTTCCTAAATGTGGCCACTCTTTTCACGTCGACTGCATC 519
Query 422 GATACTTGGTTCCGTTCTAGATCCACTTGCCCGCTTTGCAGAGCTCCGGTTCAACCCCCG 481
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 GATACTTGGTTCCGTTCCAGATCCACTTGCCCGCTTTGCAGAGCTCCGGTTCAACCCCCG 579
Query 482 GTTCAGGTCATTGAAACCGGATCTTCTTCTTCTTC---GCCGCTGAGATTTCCGACGGAG 538
||||||||||||||||||| |||||||||||||| |||| ||| |||||||||||||
Sbjct 580 TTTCAGGTCATTGAAACCGGTTCTTCTTCTTCTTCTTCGCCGTTGACATTTCCGACGGAG 639
Query 539 GCTTGCGAGAGAGAACCAATTGATCTCGTCGGAATCATTGTGGAGATTCCCAGAGAATTT 598
| ||||||||||||||| ||||| |||| ||| ||||||||||| ||| |||||||| ||
Sbjct 640 GGTTGCGAGAGAGAACCGATTGACCTCGCCGGTATCATTGTGGATATTTCCAGAGAAGTT 699
Query 599 GAAATTCAAGGCTCAAACCCGGGTCTACCCATCGAAAACGGATCCAAA-TTCCCGGGTAA 657
||| || |||||||||| |||||||||||||||||||||||||| ||| || |||||||
Sbjct 700 GAATTTGAAGGCTCAAATCCGGGTCTACCCATCGAAAACGGATC-AAAGTTTCCGGGTAG 758
Query 658 TCGGGTTTTGTCTTTGAAAAGGTTATGGAGCATCTGATTACGGGCGGGTAAATGGGTTTC 717
||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 759 TCGGGTTTTGTCTTTAAAAAGGCTATGGAGCATCTGATTGCGGGCGGGTAAATGGGTTTC 818
Query 718 TAttttttt 726
|||||||||
Sbjct 819 TATTTTTTT 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36821629751
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5