BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483938
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47580.1 | Symbols: U1A | spliceosomal protein U1A | chr2:19... 1284 0.0
> AT2G47580.1 | Symbols: U1A | spliceosomal protein U1A | chr2:19517187-19518871
FORWARD LENGTH=980
Length=980
Score = 1284 bits (695), Expect = 0.0
Identities = 866/943 (92%), Gaps = 34/943 (4%)
Strand=Plus/Plus
Query 18 CGATGGAGATGCAGGAGGCTAATCAAGGAGGAGGAGAGGAGGTTTCTCCGAATCAGACGA 77
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 41 CGATGGAGATGCAAGAGGCTAATCAAGGAGGAGGATCGGAGGTTTCTCCGAATCAGACGA 100
Query 78 TTTACATCAACAATCTCAACGAAAAAGTGAAGATCGATGAGCTGAAGAAATCGCTGAATG 137
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 101 TTTACATCAACAATCTCAACGAAAAAGTGAAGCTTGATGAGCTGAAGAAATCGCTGAATG 160
Query 138 CTGTGTTCTCTCAGTTCGGGAAGATACTGGAGATATTGGCGTTTAAGACGC-TGAAGCAC 196
| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 161 CAGTGTTCTCTCAGTTCGGGAAGATACTGGAGATATTGGCGTTTAAGAC-CTTTAAGCAC 219
Query 197 AAAGGACAAGCTTGGGTAGTCTTCGACAACACCGACTCTGCTTCCACTGCTATTGCTAAA 256
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 220 AAAGGACAAGCTTGGGTAGTCTTCGACAACACCGAGTCTGCTTCCACTGCTATTGCTAAA 279
Query 257 ATGAATGAGTTTCCTTTCTACGATAAGCACATGAGAATACAATATGCCAAAACAAAATCA 316
|||||| | |||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 280 ATGAATAATTTTCCTTTCTACGACAAGGAGATGAGAATACAATATGCCAAAACAAAATCA 339
Query 317 GATGTTGTTGCCAAGGCCGATGGTACATTTGTTCCTCGCgagaagagaaagagacatgag 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GATGTTGTTGCCAAGGCCGATGGTACATTTGTTCCTCGCGAGAAGAGAAAGAGACATGAG 399
Query 377 gagaaaggaggc---aagaaaaagaaagaCCACCACCATGATTCTACACAAATGGGCATG 433
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 400 GAGAAAGGAGGCGGCAAGAAAAAGAAAGACCAGCACCATGATTCTACACAGATGGGCATG 459
Query 434 GCCACGAACTCAGCATATCCAGGTGTCTATGGGGCTGCACCTCCTCTTTCGCAAGTACCG 493
||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 460 CCCATGAACTCAGCATATCCAGGTGTCTATGGAGCTGCACCTCCTCTATCGCAAGTACCA 519
Query 494 TACCCTGGTGGTGTGAAACCCAATCTGCCCGAGGCACCAGCTCCGCCAAATAACATTCTC 553
|||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 520 TACCCTGGTGGTATGAAACCCAATATGCCCGAGGCACCAGCTCCGCCAAATAATATTCTC 579
Query 554 TTTGTCCAAAACCTTCCTCACGAGACAACTCCAATGATGCTTCAGATGCTGTTCTACCAG 613
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 580 TTTGTCCAAAACCTTCCTCACGAGACAACTCCAATGGTGCTTCAGATGTTGTTCTGCCAG 639
Query 614 TACCAAGGGTTTAAGGAAGTTAGGATGGTTGAAGCCAAACCAGGAATCGCCTTTGTGGAG 673
|||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 640 TACCAAGGATTTAAGGAAGTTAGAATGATTGAAGCCAAACCGGGAATCGCCTTTGTGGAG 699
Query 674 TTTGCTGATGAGATGCAGTCAACCGTCGCAATGCAGGGACTTCAAGGTTTCAAGATTCAG 733
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 700 TTTGCTGATGAGATGCAGTCGACGGTCGCAATGCAGGGACTTCAAGGTTTCAAGATTCAG 759
Query 734 CAAAACCAGATGCTCATCACGTACGCCAAGAAATAGACAAATTTCGTTTGATCTGT---- 789
||||||||||||||||||||||| |||||||||||||||| |||||||| || |||
Sbjct 760 CAAAACCAGATGCTCATCACGTATGCCAAGAAATAGACAA-TTTCGTTTTATTTGTGTTT 818
Query 790 C-A--A--T--GTT---A-CT-TC--T-T--C--C----ATGGTTTGCGCAAGAAGGACA 826
| | | | ||| | || || | | | | ||||||||||||||||||| |
Sbjct 819 CGATGAGATATGTTTGTATCTGTCAATGTTACTTCTTCCATGGTTTGCGCAAGAAGGAAA 878
Query 827 CTTATCTTTCTTGTGTGTTTGTTGTAGAATTTTCTTAGATTATTACACACTTATCTAACT 886
||| ||||||||||||||||||||||||||| |||||| ||||||||| | ||||||||
Sbjct 879 CTTGTCTTTCTTGTGTGTTTGTTGTAGAATTG-CTTAGAATATTACACAATCATCTAACT 937
Query 887 TACAATTTTTTCATCTAAACAATAAGCGTCTCGATTTGGTGTT 929
||||||||||||||| | |||||||||||||||||||||||||
Sbjct 938 TACAATTTTTTCATCCAGACAATAAGCGTCTCGATTTGGTGTT 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45411668888
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5