BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483939
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47590.1 | Symbols: PHR2 | photolyase/blue-light receptor 2 ... 2643 0.0
> AT2G47590.1 | Symbols: PHR2 | photolyase/blue-light receptor
2 | chr2:19521797-19524063 FORWARD LENGTH=1766
Length=1766
Score = 2643 bits (1431), Expect = 0.0
Identities = 1609/1691 (95%), Gaps = 28/1691 (2%)
Strand=Plus/Plus
Query 43 ACACACAAAAAATGGA---TTCGAACCTTGAAGAAAAGAACCTAAACCCAGAAACAAAAT 99
||||||| |||||||| |||||| |||||| || ||||||||||||||||||||||
Sbjct 81 ACACACACAAAATGGATTCTTCGAATGTTGAAG--AA-AACCTAAACCCAGAAACAAAAT 137
Query 100 CCGCAGAAGAAGAAAACCCACTCGCCATTATCCATCCTTCTCTACCAATCGCATCTCTTT 159
||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct 138 CCGCAGAAGAACAAAACCCACTTGCCATTTTCCATTCTTCTCTACCAATCGCATCTCTTT 197
Query 160 CTCTGACCTTGTTCCCCA-CATCAACTCAATTTCTCAAACTGTTTTCTCATCACCCAAAC 218
||||||||||||| |||| | || ||||||||||||||| ||||| ||||||| ||||||
Sbjct 198 CTCTGACCTTGTT-CCCATCCTCGACTCAATTTCTCAAATTGTTTGCTCATCATCCAAAC 256
Query 219 AAGGTTAAGATCCCTACGCAGGCctcttctctcactcatctctctctttattc--t-tct 275
||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||
Sbjct 257 AAGGTTAAGATCCCTACGCAGGCTTCTTCTCTCACTCATCTCTCTCTTTCTTCTGTCTCT 316
Query 276 cctgtctctccttcaccttccagaatctctttcaAATCCACCATCGCTGCTAACCCTCTT 335
||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CCT-T-T-TCCTT---CTTCCAGAATCTCTTTCAAATCCACCATCGCTGCTAACCCTCTT 370
Query 336 CACTCCCCTCTCTCTATCGTCCCTCGTCGTCCCGTTGATCCTTCCTCCGCCGCCGCTCTC 395
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CAATCCCCTCTCTCCATCGTCCCTCGTCGTCCCGTTGATCCTTCCTCCGCCGCCGCTCTC 430
Query 396 CGCCGTGCTGCTGTCGTCTGGTTCCGCAATGACCTCCGTGTCCACGACAACGAGTGTCTC 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 CGCCGTGCTGCTGTCGTCTGGTTCCGCAATGACCTCCGTGTCCACGACAACGAGTGTCTC 490
Query 456 AACTCCGCCAACGACGAGTGCGTCTCCGTTTTGCCCGTTTACTGCTTCGACCCTAGGGAT 515
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 491 AACTCCGCCAACGACGAGTGCGTCTCCGTTTTGCCCGTTTACTGCTTCGACCCTAGAGAT 550
Query 516 TACGGGAAATCCTCTTCCGGGTTCGACAAAACGGGGCCTTTTCGAGCCCAGTTTCTGATT 575
||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 551 TACGGCAAGTCCTCTTCCGGCTTCGACAAAACGGGGCCTTTTCGTGCCCAGTTTCTGATT 610
Query 576 GAGTCCGTCTCGGAGCTCCGGAAGAATCTCCAAGCGAGAGGGTCGAATCTAGTTGTCCGT 635
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 611 GAGTCCGTTTCGGAGCTCCGGAAGAATCTCCAAGCCAGAGGGTCGAATCTAGTTGTCCGT 670
Query 636 GTAGGGAAACCTGAAGCTGTTTTGGTGGAATTGGCTAAGGAGATTGGAGCTGACGCGGTT 695
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GTCGGGAAACCTGAAGCTGTTTTGGTGGAATTGGCTAAGGAGATTGGAGCTGACGCGGTT 730
Query 696 TATGCTCACAGGGAAGTGTCTCACGACGAGGTTAAAGCGGAAGGGAAGATAGAGACGGCG 755
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 731 TATGCTCACAGAGAAGTGTCTCACGACGAGGTTAAAGCGGAAGGGAAGATAGAGACCGCG 790
Query 756 ATGAAGGAGGAAGGCGTTGAAGTCAAGTATTTCTGGGGAAGCACTCTCTATCACTTGGAT 815
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 791 ATGAAGGAGGAAGGCGTTGAAGTCAAGTATTTCTGGGGAAGCACTCTCTATCATTTGGAT 850
Query 816 GATTTGCCCTTCAAAATTGAAGATTTGCCGTCAAATTACGGAGCTTTCAAGGATAAAGTC 875
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 851 GATTTGCCCTTCAAAATTGAAGACTTGCCGTCAAATTACGGAGCTTTCAAGGATAAAGTC 910
Query 876 CAGAAACTGGAGATTAGGAAGACAATCGCAGCGCTTGATCAATTGAAAAGCTTGCCCTCT 935
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 911 CAGAAATTGGAGATTAGGAAGACTATCGCAGCGCTTGATCAATTGAAAAGCTTGCCCTCT 970
Query 936 CGAGGAGACGTTGAGCTTGGCGATATTCCTTCTCTCCTTGATCTTGGCATTAGCCCCACT 995
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 971 CGAGGAGACGTTGAGCTTGGCGATATTCCTTCTCTCCTGGATCTTGGCATTAGCCCCACT 1030
Query 996 GCTAGAACCAGCCAGGAGGGGAAACCGACAATGGTTGGAGGAGAGACAGAGGCGTTGACT 1055
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 CCTAGGACTAGCCAGGAGGGGAAACCGACAATGGTTGGAGGAGAGACAGAGGCGTTGACT 1090
Query 1056 AGACTAAAGAGCTTTGCAGCGGATTGTCAGGCTCGGTTGAGCAAGGGAAACCAGAAAGGA 1115
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 AGACTAAAGAGCTTTGCCGCGGATTGTCAGGCTCGGTTGAGCAAGGGAAACCAGAAAGGA 1150
Query 1116 GGCAACAACAGTGTCTTTGGTGCAAACTTCTCTTGCAAGATATCACCTTGGTTAGCCATG 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 GGCAACAACAGTGTCTTTGGTGCAAACTTCTCTTGCAAGATATCACCTTGGTTAGCCATG 1210
Query 1176 GGAAGCATCTCTCCTCGTTCCATGTTCGATGAGCTGAAGAAAACAATCTCTGCATCAACC 1235
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1211 GGAAGCATCTCTCCTCGTTCCATGTTCGATGAGCTGAAGAAAACAATCTCCGCATCAACC 1270
Query 1236 ACCACCACAACTCCAAGGAACGGACCGGGAGATACAGGACTCAACTGGTTAATGTATGAG 1295
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 ACCTCCACAACTCCAAGGAACGGACCGGGAGATACAGGACTCAACTGGTTAATGTATGAG 1330
Query 1296 TTGCTATGGAGGGATTTCTTCAGGTTTATAACCAAGAAATACAGCTCAGCGAAGACGCAG 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 TTGCTATGGAGGGATTTCTTCAGGTTTATAACCAAGAAATACAGCTCAGCGAAGACGCAG 1390
Query 1356 GTCGAGGCTGGTCCGGCTACAGCCTGTACCGGTGCCTTTGCTTAAACCTTTGAAAACTTT 1415
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1391 GTCGAGGCTGGTCCGGCTACAGCCTGTACCGGTGCCTTTGCTTAAACATTTGAAAACTTT 1450
Query 1416 CAGGTGACCGGAAAAGTTAGAACCCATTTGTTT-TTTGCCCTACTCTTGGTGTATGGTGA 1474
|||||||||||||||||||||| | | ||||| ||||||||||||| |||||||||||
Sbjct 1451 CAGGTGACCGGAAAAGTTAGAAGCGACCTGTTTCTTTGCCCTACTCT-GGTGTATGGTGG 1509
Query 1475 ATCTA-TTTACTATCTGGACAGGACTGAACTGCTCTCTTTTGAAACTTGAGTGTCTGGAG 1533
|| || ||| ||||| |||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1510 AT-TAATTTGCTATCCGGACAGGACTTTACTGCTCTCTTTTGAAACTTGAGTGTCAGGAG 1568
Query 1534 AATGAATTCTAAGCTTCtttttttttttGCTCAATCAAGTTGTCCGTTCCCTGTTCTAA- 1592
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1569 AATAAAATCTAAGCTTCTTTTTTTG---GCTCAATCAAGTTGTCCGTTCCCTGTTCTAAA 1625
Query 1593 CATTTCGGATACTCATTCCATAAAAAGTCTCTAGAATTTGAGACGCTCTCCTTTGCGGTT 1652
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1626 CATTTCGGATACTCATTCCATAAAAAGTCTCTACAATTTGAGACGCTCTCCTTTGTGGTT 1685
Query 1653 TAAGACTTGAGAATGTATCTTAGAAAATATCTC-AAGTAGTTGTGTCTATGAATATTAAA 1711
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 1686 -AAGACTTGAGAATGTATCTTAGAAAATAAC-CGAAGTAGTTGTGTCTATGAATATTAAA 1743
Query 1712 TTCAGGAATAT 1722
|||||||||||
Sbjct 1744 TTCAGGAATAT 1754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85140124320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5