BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483941
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47610.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 1520 0.0
AT3G62870.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 878 0.0
> AT2G47610.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr2:19529744-19531659 FORWARD LENGTH=1142
Length=1142
Score = 1520 bits (823), Expect = 0.0
Identities = 911/954 (95%), Gaps = 3/954 (0%)
Strand=Plus/Plus
Query 1 TATATATATAAAAGGCAAAACCCTAGCAAGGCGATACTCTTCGACTCAGCCGTCCTTTCG 60
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 15 TATATATATAAAAGGCAAAACCCTAG-AAAACGATACTCTTCGACTCAGCCGTCCTTTCG 73
Query 61 CATAAACCATTTGGAGTTGGAACTTAGGACGACGACAATGGCCCCGAAGAAAGGAGTTAA 120
|| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 74 CAGAAACCATTTGGAGTTGGAGCTTTGGACGACGACAATGGCCCCGAAGAAAGGAGTGAA 133
Query 121 GGTAGCTGCCAAGAAGAAGACGGAGGAGAAAGTTACAAACCCTCTATTCGAGAGGAGGCC 180
||||||||| ||||||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 134 GGTAGCTGCTAAGAAGAAGACCGCGGAGAAAGTTTCAAACCCTCTATTCGAGAGGAGGCC 193
Query 181 TAAGCAATTCGGTATTGGTGGAGCTTTGCCTCCTAAGAAGGATCTCTCTCGCTACATCAA 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 194 TAAGCAATTCGGTATTGGTGGAGCTTTACCTCCTAAGAAGGATCTCTCTCGCTACATCAA 253
Query 241 ATGGCCCAAATCTATCCGTCTTCAAAGGCAAAAGAGGATCCTTAAGCAGAGGTTGAAGGT 300
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 254 ATGGCCCAAATCCATCCGTCTTCAAAGGCAAAAGAGGATCCTGAAGCAGAGGTTGAAGGT 313
Query 301 CCCTCCAGCTCTTAACCAATTCACCAAGACTCTTGACAAGAATCTTGCTACCAGCCTCTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 CCCTCCAGCTCTTAACCAATTCACCAAGACTCTTGACAAGAATCTTGCTACCAGCCTCTT 373
Query 361 CAAGGTCCTTCTCAAGTACAGGCCAGAAGACAAAGCTGCCAAGAAAGACCGCCTTGTCAA 420
|||||||||||| |||||||||||||||||||||||||||||||| || || ||||| ||
Sbjct 374 CAAGGTCCTTCTGAAGTACAGGCCAGAAGACAAAGCTGCCAAGAAGGAGCGTCTTGTAAA 433
Query 421 GAAGGCCCAAGCTGAAGCTGAGGGAAAGCCTTCCGAGTCTAAGAAGCCCATTGTAGTCAA 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 434 GAAGGCCCAAGCTGAAGCTGAGGGAAAGCCTTCTGAGTCTAAGAAGCCCATTGTAGTCAA 493
Query 481 ATACGGCCTCAACCATGTGACCTACCTCATTGAGCAGAACAAGGCTCAACTTGTTGTCAT 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 494 ATACGGCCTCAACCATGTGACCTACCTCATTGAGCAGAACAAGGCCCAACTTGTTGTTAT 553
Query 541 TGCTCATGATGTCGACCCAATTGAGTTGGTTGTCTGGTTGCCTGCTCTCTGCAGGAAGAT 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 554 TGCTCATGATGTCGACCCAATTGAGTTGGTTGTCTGGTTGCCTGCTCTGTGCAGGAAGAT 613
Query 601 GGAAGTCCCCTACTGCATTGTCAAGGGCAAATCTCGTCTTGGCGCGGTTGTTCACCAAAA 660
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 614 GGAAGTCCCGTACTGCATTGTCAAGGGCAAATCTCGTCTTGGAGCGGTTGTTCACCAGAA 673
Query 661 GACTGCTGCTTGCTTGTGTTTGACCACTGTCAAGAACGAGGACAAGCTAGAGTTCAGCAA 720
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 GACTGCTTCTTGCTTGTGTTTGACCACTGTCAAGAACGAGGACAAGCTAGAGTTCAGCAA 733
Query 721 AATCCTAGAGGCTATCAAGGCTAACTTCAATGACAAGTACGAGGAGTACAGGAAGAAATG 780
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 734 AATCCTGGAAGCTATCAAGGCCAACTTCAATGACAAGTACGAGGAGTACAGGAAGAAATG 793
Query 781 GGGAGGAGGCATAATGGGATCAAAGTCTCAGGCTAAGACCAAGGCCAAGGAAAGAGTTCT 840
||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
Sbjct 794 GGGAGGAGGCATAATGGGATCTAAGTCTCAGGCAAAGACCAAGGCAAAGGAAAGAGTTAT 853
Query 841 TGCAAAGGAGGCTGCCCAAAGGCTGAATTAAGAGAGGCTGGCTTCTTTTGTGTGTGGTTT 900
|||||||||||||||||||||| ||||||||||| | || ||||||||||| ||||||||
Sbjct 854 TGCAAAGGAGGCTGCCCAAAGGATGAATTAAGAG-G-CTAGCTTCTTTTGTTTGTGGTTT 911
Query 901 GCTCGGATTCTTGGAACTTAATAGAGCTTTTTGTTTAGCTGTTTCTTGAAGTAC 954
|||||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 912 GCTCGGATTCGTAAAACTTAATAGAGCTTTTTGTTTAGCTGGTTCTTGAAGTAC 965
> AT3G62870.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr3:23242665-23244353 REVERSE LENGTH=1048
Length=1048
Score = 878 bits (475), Expect = 0.0
Identities = 676/774 (87%), Gaps = 9/774 (1%)
Strand=Plus/Plus
Query 88 GACGACGACAATGGCCCCGAAGAAAGGAGTTAAGGTAGCTGCCAAGAAGAAGACGGAGGA 147
|||||| |||||||| |||||||| |||||||| || ||| | ||||||||| | |||
Sbjct 71 GACGACAACAATGGCACCGAAGAAGGGAGTTAAAGTGGCTTCAAAGAAGAAG-C--CGGA 127
Query 148 GAAAGTTACAAACCC-TCTATTCGAGAGGA-GGCCTAAGCAATTCGGTATTGGTGGAGCT 205
||||||||| ||||| | | || |||| || | || |||||||||||||||||||| |||
Sbjct 128 GAAAGTTACCAACCCAT-TGTTTGAGA-GACGCCCAAAGCAATTCGGTATTGGTGGCGCT 185
Query 206 TTGCCTCCTAAGAAGGATCTCTCTCGCTACATCAAATGGCCCAAATCTATCCGTCTTCAA 265
|||||||||||||||||||| ||||| |||||||||||||| || || ||||||||||||
Sbjct 186 TTGCCTCCTAAGAAGGATCTTTCTCGTTACATCAAATGGCCTAAGTCAATCCGTCTTCAA 245
Query 266 AGGCAAAAGAGGATCCTTAAGCAGAGGTTGAAGGTCCCTCCAGCTCTTAACCAATTCACC 325
||||| ||| | ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 246 AGGCAGAAGCGTATCCTTAAGCAGAGGTTGAAGGTTCCTCCAGCTCTTAACCAGTTCACC 305
Query 326 AAGACTCTTGACAAGAATCTTGCTACCAGCCTCTTCAAGGTCCTTCTCAAGTACAGGCCA 385
||||| ||||| |||||||| || ||||||||||||||| | ||||| ||||| ||||||
Sbjct 306 AAGACCCTTGATAAGAATCTCGCCACCAGCCTCTTCAAGATTCTTCTGAAGTATAGGCCA 365
Query 386 GAAGACAAAGCTGCCAAGAAAGACCGCCTTGTCAAGAAGGCCCAAGCTGAAGCTGAGGGA 445
|| |||||||| || ||||| || |||||| | || ||||| |||||||| || || |||
Sbjct 366 GAGGACAAAGCCGCAAAGAAGGAACGCCTTTTGAACAAGGCTCAAGCTGAGGCAGAAGGA 425
Query 446 AAGCCTTCCGAGTCTAAGAAGCCCATTGTAGTCAAATACGGCCTCAACCATGTGACCTAC 505
|||||| | || || |||||||||||||| || || || || |||||||||||||| |||
Sbjct 426 AAGCCTGCTGAATCCAAGAAGCCCATTGTTGTTAAGTATGGTCTCAACCATGTGACTTAC 485
Query 506 CTCATTGAGCAGAACAAGGCTCAACTTGTTGTCATTGCTCATGATGTCGACCCAATTGAG 565
||||| |||||||||||||| || ||||| |||||||| || ||||| ||||| || |||
Sbjct 486 CTCATCGAGCAGAACAAGGCACAGCTTGTGGTCATTGCACACGATGTTGACCCTATCGAG 545
Query 566 TTGGTTGTCTGGTTGCCTGCTCTCTGCAGGAAGATGGAAGTCCCCTACTGCATTGTCAAG 625
||||| |||||||| ||||| ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 546 TTGGTGGTCTGGTTACCTGCACTCTGCAGGAAAATGGAAGTCCCTTACTGCATTGTTAAG 605
Query 626 GGCAAATCTCGTCTTGGCGCGGTTGTTCACCAAAAGACTGCTGCTTG-CTTGTGTTTGAC 684
|| |||||||||||||| ||||| |||||||| ||||||||||| || |||||| |||||
Sbjct 606 GGAAAATCTCGTCTTGGAGCGGTCGTTCACCAGAAGACTGCTGC-TGCCTTGTGCTTGAC 664
Query 685 CACTGTCAAGAACGAGGACAAGCTAGAGTTCAGCAAAATCCTAGAGGCTATCAAGGCTAA 744
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 665 CACTGTCAAGAACGAGGACAAGCTTGAGTTCAGCAAAATCCTCGAGGCCATCAAGGCTAA 724
Query 745 CTTCAATGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAGGCATAATGGGATCAAA 804
|||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 725 CTTCAACGACAAGTACGAGGAGTACAGGAAGAAGTGGGGAGGTGGCATAATGGGATCCAA 784
Query 805 GTCTCAGGCTAAGACCAAGGCCAAGGAAAGAGTTCTTGCAAAGGAGGCTGCCCA 858
|||||| || |||||||| || ||||| || ||| |||| ||||||||||||||
Sbjct 785 GTCTCAAGCCAAGACCAAAGCTAAGGAGAGGGTTATTGCTAAGGAGGCTGCCCA 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5