BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483945
Length=562
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47640.1 | Symbols: | Small nuclear ribonucleoprotein famil... 785 0.0
AT3G62840.1 | Symbols: | Small nuclear ribonucleoprotein famil... 427 5e-119
> AT2G47640.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr2:19537178-19538624 FORWARD LENGTH=644
Length=644
Score = 785 bits (425), Expect = 0.0
Identities = 532/579 (92%), Gaps = 26/579 (4%)
Strand=Plus/Plus
Query 2 AGTTTCGAGTCGTCGTTCTTCTTCTTCTTCTGTGTGTGAGATCTGTGGAAAACGAAAGCG 61
||| ||||||||||||||||||||||| |||| | | |||||||| ||||||||||||||
Sbjct 8 AGTATCGAGTCGTCGTTCTTCTTCTTCCTCTGAGAGAGAGATCTGCGGAAAACGAAAGCG 67
Query 62 AGATTTATCAGGTTCGGTGATTGTTTGTGGAGAAGAAGCTCGCGATAAGTCAACATGAGC 121
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 68 AGATTTATCAGGTTCGGTGATTCTTTGTGGAGAAGAAGCTCGCGATAAGTCAACATGAGC 127
Query 122 AAGCCAATGGAAGAGGATACCAACCAGGGAAAGACTGAGGAAGAGGAATTCAACACCGGG 181
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 128 AAGCCAATGGAAGAGGATACCAATCAGGGCAAGACTGAGGAAGAGGAATTCAACACCGGG 187
Query 182 CCACTCTCTGTTCTTATGATGAGCGTGAAGAATAATACTCAGGTTTTAATCAATTGCCGG 241
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 188 CCACTCTCTGTTCTTATGATGAGCGTCAAGAATAACACTCAGGTTTTAATCAATTGCCGG 247
Query 242 AACAACAGGAAACTTCTTGGGAGAGTGAGGGCGTTTGACAGACACTGCAACATGGTTCTT 301
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 248 AACAACAGGAAACTTCTTGGGCGAGTGAGGGCGTTTGACAGACACTGCAACATGGTTCTT 307
Query 302 GAAAATGTCAGAGAGATGTGGACTGAGGTTCCGAAAACTGGGAAAGGCAAGAAGAAAGCA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GAAAATGTCAGAGAGATGTGGACTGAGGTTCCGAAAACTGGGAAAGGCAAGAAGAAAGCA 367
Query 362 CTTCCGGTGAACAGAGATCGGTTCATAAGCAAGATGTTTCTACGTGGAGATTCAGTCATT 421
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 368 CTTCCGGTGAACAGAGATCGGTTCATAAGCAAGATGTTTCTACGTGGAGACTCGGTCATT 427
Query 422 ATCGTCCTCAGGAATCCAAAATGAGAG-A-GA----C--A------TGTTCCTTGTTTGT 467
||||||||||||||||||||||||||| | || | | ||||||||||||||
Sbjct 428 ATCGTCCTCAGGAATCCAAAATGAGAGGAAGAGAGACTTAGAGACATGTTCCTTGTTTGT 487
Query 468 -G--CTGAAAGTGATAAATTCTTGTAGGTATTAGCATCTTTTAA-GTTTGACATTTATGT 523
| || ||| ||||||||||||||||||| ||||||||||||| ||| | || ||
Sbjct 488 TGTGCTAAAACTGATAAATTCTTGTAGGTAGTAGCATCTTTTAAAGTT--A--TTC--GT 541
Query 524 GTCTCGTTTTCGTTTATGCCCGAATTGAGAAGATCTTTT 562
||| |||||||||||| ||||||||| ||||||||||
Sbjct 542 --CTCATTTTCGTTTATGTCCGAATTGACAAGATCTTTT 578
> AT3G62840.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr3:23235490-23236816 REVERSE LENGTH=687
Length=687
Score = 427 bits (231), Expect = 5e-119
Identities = 306/343 (89%), Gaps = 2/343 (1%)
Strand=Plus/Plus
Query 108 AAGTCAACATGAGCAAGCCAATGGAAGAGGATACCAACCAGGGAAAGACTGAGGAAGAGG 167
|||| |||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 113 AAGTGAACATGAGTAAACCAATGGAAGAGGATACCAACCAGGGAAAGACTGAGGAGGAGG 172
Query 168 AATTCAACACCGGGCCACTCTCTGTTCTT-ATGATGAGCGTGAAGAATAATACTCAGGTT 226
| |||||||| || |||||||||||| || |||||||| || |||||||| ||||||||
Sbjct 173 AGTTCAACACTGGACCACTCTCTGTT-TTGATGATGAGTGTTAAGAATAACACTCAGGTG 231
Query 227 TTAATCAATTGCCGGAACAACAGGAAACTTCTTGGGAGAGTGAGGGCGTTTGACAGACAC 286
|| ||||||||||| |||||||||||||| ||||| |||| ||||| |||||||| |||
Sbjct 232 TTGATCAATTGCCGTAACAACAGGAAACTCCTTGGCCGAGTTAGGGCTTTTGACAGGCAC 291
Query 287 TGCAACATGGTTCTTGAAAATGTCAGAGAGATGTGGACTGAGGTTCCGAAAACTGGGAAA 346
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 292 TGCAACATGGTTCTTGAAAATGTCAGAGAAATGTGGACTGAGGTTCCGAAAACCGGAAAA 351
Query 347 GGCAAGAAGAAAGCACTTCCGGTGAACAGAGATCGGTTCATAAGCAAGATGTTTCTACGT 406
|| ||||||||||| ||||| || ||||||||||| ||||| ||||||||||| || |||
Sbjct 352 GGAAAGAAGAAAGCTCTTCCTGTTAACAGAGATCGATTCATCAGCAAGATGTTCCTGCGT 411
Query 407 GGAGATTCAGTCATTATCGTCCTCAGGAATCCAAAATGAGAGA 449
||||| ||||||||||||||||||||||| || || ||| |||
Sbjct 412 GGAGACTCAGTCATTATCGTCCTCAGGAACCCCAAGTGAAAGA 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26975736939
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5