BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483948
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47650.2 | Symbols: UXS4 | UDP-xylose synthase 4 | chr2:1953... 2017 0.0
AT3G62830.1 | Symbols: UXS2, ATUXS2, AUD1 | NAD(P)-binding Ross... 1098 0.0
> AT2G47650.2 | Symbols: UXS4 | UDP-xylose synthase 4 | chr2:19538610-19541473
REVERSE LENGTH=1600
Length=1600
Score = 2017 bits (1092), Expect = 0.0
Identities = 1339/1446 (93%), Gaps = 65/1446 (4%)
Strand=Plus/Plus
Query 33 AAAGATGGCGTCTGAGCTGACATACCGGCGACACGAGATGGAGCAACCAGAAGCGGAATC 92
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 106 AAAGATGGCGTCTGAGCTGACAAACCGGCGACACGAGATAGAGCAACCAGAAGCGGAATC 165
Query 93 TTATTATCCGAAGCCGATAAAGCCGTGGTTCGTAGCGATTCGTCCGATCCGTTACATGCT 152
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 166 TTATTATCCAAAGCCGATAAAGCCATGGTTCGTAGCGATTCGTCCGATCCGTTACATGCT 225
Query 153 CCGAGAACAGAGACTCGTCTTCGTCCTCGTCGGCATTGCCATCGCCACATTAGGATTCAC 212
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 CAGAGAACAGAGACTCGTCTTCGTCCTCGTCGGCATTGCCATCGCCACATTAGGATTCAC 285
Query 213 AATCTTCTCCAAATCATCC-A--ACCAGCCAATTCCGTACGACGTGGATCCGCTCCCCGG 269
||||||||||||||||||| | |||| |||||||| ||||||||||||||||| ||||
Sbjct 286 AATCTTCTCCAAATCATCCAACCACCAACCAATTCCTTACGACGTGGATCCGCTTTCCGG 345
Query 270 ATACGGAATGCGATC---GT-AT-G-A---G--A---A-G------AAG--G-CGAGCAT 305
||||||||||||||| || || | | | | | | ||| | | |||||
Sbjct 346 ATACGGAATGCGATCGGAGTCATCGTATCTGCCAGCGACGATTCATAAGAAGCCAAGCAT 405
Query 306 CGAGTACATGAGCCGGATCGGATCGGCAGGCGGCAAAATCCCTCTAGGCCTGAAACGGAA 365
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 406 CGAGTACATGAGCCGGATCGGATCGGCAGGCGGCAAAATCCCTCTAGGCTTGAAACGGAA 465
Query 366 AGTGCTAAGGGTGGTTGTGACAGGTGGAGCAGGATTCGTCGGGTCACACCTGGTGGACCG 425
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 466 AGTGCTAAGGGTTGTTGTGACAGGTGGAGCAGGGTTCGTCGGGTCACACCTGGTGGACCG 525
Query 426 GTTGATGGCGAGAGGAGATAACGTGATCGTGGTCGACAATTTCTTCACCGGAAGGAAAGA 485
||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 526 GTTGATGGCTCGAGGAGACAACGTGATCGTGGTCGACAATTTCTTCACGGGAAGGAAAGA 585
Query 486 GAACGTGATGCACCACTTCAGTAACCCTAATTTCGAAATGATCCGTCACGATGTAGTGGA 545
||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 586 GAACGTGATGCACCATTTCAATAACCCTAATTTCGAGATGATCCGTCACGATGTAGTGGA 645
Query 546 GCCGATCCTCCTAGAGGTTGATCAGATCTACCATTTGGCATGCCCTGCTTCTCCTGTCCA 605
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 646 GCCGATCCTTCTAGAGGTTGATCAGATCTACCATTTGGCATGCCCTGCTTCTCCTGTTCA 705
Query 606 CTACAAATTCAATCCCGTCAAGACTATCATATCCTTTACGAATGTGGTGGGAACCTTGAA 665
||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 706 CTACAAATTCAATCCCGTCAAGACTATCA-A-----GACGAATGTGGTGGGAACATTGAA 759
Query 666 CATGTTGGGGCTAGCGAAGAGAGTGGGAGCAAGATTCTTGCTGACGAGTACAAGTGAGGT 725
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 760 CATGTTGGGACTAGCGAAGAGAGTGGGAGCAAGATTCTTGCTGACGAGTACGAGTGAGGT 819
Query 726 CTACGGAGATCCTCTTCAACATCCTCAGGTTGAGACTTACTGGGGCAACGTTAATCCCAT 785
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 CTATGGAGATCCTCTTCAACATCCTCAGGTTGAGACTTACTGGGGCAACGTTAATCCCAT 879
Query 786 CGGTGTTCGGAGTTGTTACGACGAAGGCAAACGTACGGCTGAGACTTTGGCCATGGACTA 845
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 880 CGGTGTTCGGAGTTGTTACGACGAAGGCAAACGTACGGCTGAGACTTTGACCATGGACTA 939
Query 846 TCATAGAGGCGCTAATGTTGAGGTTAGGATTGCTCGGATCTTCAATACTTATGGCCCAAG 905
||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 940 TCACAGAGGCGCTAATGTTGAGGTTAGGATTGCTAGGATATTCAACACTTATGGCCCAAG 999
Query 906 GATGTGTATCGATGACGGTCGTGTGGTTAGCAACTTCGTTGCCCAGGCATTAAGAAAAGA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 GATGTGTATCGATGACGGTCGTGTGGTTAGCAACTTCGTTGCCCAGGCATTAAGAAAAGA 1059
Query 966 GCCTTTGACTGTTTATGGTGATGGTAAGCAGACAAGGAGTTTCCAGTTTGTCTCTGATCT 1025
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1060 GCCTTTGACTGTTTATGGTGATGGTAAGCAGACTAGGAGTTTCCAGTTTGTCTCTGATCT 1119
Query 1026 GGTGGAGGGTCTGATGAGGTTGATGGAGGGAGAACATGTCGGTCCATTTAACCTTGGTAA 1085
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 GGTGGAAGGTCTGATGAGGTTGATGGAGGGAGAACATGTCGGTCCATTTAACCTTGGTAA 1179
Query 1086 CCCCGGTGAATTCACCATGCTCGAGCTCGCTAAG-G--TGGT---T---CA--------A 1128
|||||||||||||||||||||||||||||||||| | |||| | || |
Sbjct 1180 CCCCGGTGAATTCACCATGCTCGAGCTCGCTAAGTGGATGGTGGGTGAGCAGGTGGTTCA 1239
Query 1129 -GAGACGATTGACCCGAACGCAAAGATAGAGTTCAGACCAAACACAGAGGACGACCCACA 1187
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 AGAGACAATTGACCCGAACGCAAAGATAGAGTTCAGACCAAACACAGAGGACGACCCACA 1299
Query 1188 CAAGAGGAAACCAGACATCACAAAGGCCAAAGAGCTTCTTGGTTGGGAACCAAAGGTGGC 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 CAAGAGGAAACCAGACATCACAAAGGCCAAAGAGCTTCTTGGTTGGGAACCAAAGGTGGC 1359
Query 1248 TCTACGCCAAGGGCTCCCACTTATGGTCAAAGATTTCCGTCAACGTGTCTTTGGCGACCA 1307
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 TCTACGCCAAGGACTCCCACTTATGGTCAAAGATTTCCGTCAACGTGTCTTTGGCGACCA 1419
Query 1308 AAAGCAGGAATCTTCCACCACTTCATCATCAACAGAGTAATTCTAGTAGCAGGAGAGAAT 1367
||||||||| |||||||||||||||||||||||||||||| || || || ||||| |
Sbjct 1420 AAAGCAGGATTCTTCCACCACTTCATCATCAACAGAGTAA--CT-GTCGCTGGAGAT--T 1474
Query 1368 CTCGtttcttttcgttttttcatttttaaattttgatttcgatatttctattcgtgtcaa 1427
||||||||| |||||||| ||||||||| ||||||| || || |||||| ||||||
Sbjct 1475 CTCGTTTCTCTTCGTTTT--CATTTTTAA-TTTTGAT----AT-TT-CTATTCCTGTCAA 1525
Query 1428 tgtagt 1433
||||||
Sbjct 1526 TGTAGT 1531
> AT3G62830.1 | Symbols: UXS2, ATUXS2, AUD1 | NAD(P)-binding Rossmann-fold
superfamily protein | chr3:23232386-23235567 FORWARD
LENGTH=1705
Length=1705
Score = 1098 bits (594), Expect = 0.0
Identities = 881/1019 (86%), Gaps = 22/1019 (2%)
Strand=Plus/Plus
Query 301 AGCATCGAGTACATGAGCCGGATCGGATCGGCAGGCGGCAAAATCCCTCTAGGCCTGAAA 360
||| |||||||| ||| |||||||||| | ||||||| |||||||| || || |||||
Sbjct 439 AGCCTCGAGTACCTGAACCGGATCGGAGCAACAGGCGGGAAAATCCCACTGGGATTGAAA 498
Query 361 CGGAAAGTGCTAAGGGTGGTTGTGACAGGTGGAGCAGGATTCGTCGGGTCACACCTGGTG 420
|| |||| |||||| ||||||||||| ||||| || |||||||| || || || || |||
Sbjct 499 CGCAAAGGGCTAAGAGTGGTTGTGACCGGTGGTGCTGGATTCGTTGGATCGCATCTCGTG 558
Query 421 GACCGGTTGATGGCGAGAGGAGATAAC-GTGATCGTGGTCGACAATTTCTTCACCGGAAG 479
|| || |||||||| ||||||||| || ||||| || || || ||||||||||| |||||
Sbjct 559 GATCGTTTGATGGCTAGAGGAGAT-ACTGTGATTGTTGTTGATAATTTCTTCACTGGAAG 617
Query 480 GAAAGAGAACGTGATGCACCACTTCAGTAACCCTAA-TTTCGAAATGATCCGTCACGATG 538
|||||||||||| |||||||| |||||||||||||| ||| || ||||||||||||||||
Sbjct 618 GAAAGAGAACGTTATGCACCATTTCAGTAACCCTAACTTT-GAGATGATCCGTCACGATG 676
Query 539 TAGTGGAGCCGATCCTCCTAGAGGTTGATCAGATCTACCATTTGGCATGCCCTGCTTCTC 598
| || |||||||| || || |||||||||||||||||||||||||| |||||||||||||
Sbjct 677 TGGTTGAGCCGATTCTTCTTGAGGTTGATCAGATCTACCATTTGGCTTGCCCTGCTTCTC 736
Query 599 CTGTCCACTACAAATTCAATCCCGTCAAGACTATCATATCCTTTACGAATGTGGTGGGAA 658
|||| || |||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 737 CTGTTCATTACAAATTCAATCCCGTCAAGACTATCA-A-----GACGAATGTGGTTGGAA 790
Query 659 CCTTGAACATG-TTGGGGCTAGCGAAGAGAG-TGGGAGCAAGA-TTCTTGCTGACGAGTA 715
| ||||||||| || || | || ||| ||| |||| || ||| ||||| ||||||||||
Sbjct 791 CATTGAACATGCTT-GGTTTGGCTAAGCGAGTTGGG-GCTAGATTTCTT-CTGACGAGTA 847
Query 716 CAAGTGAGGTCTACGGAGATCCTCTTCAACATCCTCAGGTTGAGACTTACTGGGGCAACG 775
| |||||||| || || |||||||| || |||||||||||||||||||||||||||||||
Sbjct 848 CCAGTGAGGTTTATGGTGATCCTCTGCAGCATCCTCAGGTTGAGACTTACTGGGGCAACG 907
Query 776 TTAATCCCATCGGTGTTCGGAGTTGTTACGACGAAGGCAAACGTACGGCTGAGACTTTGG 835
|||||||||| |||||||| ||||| ||||| ||||| ||||||||||| ||||| |||
Sbjct 908 TTAATCCCATTGGTGTTCGTAGTTGCTACGATGAAGGAAAACGTACGGCAGAGACGTTGA 967
Query 836 CCATGGACTATCATAGAGGCGCTAATGTTGAGGTTAGGATTGCTCGGATCTTCAATACTT 895
||||||||||||| |||| || ||||||||||| || |||||| |||||||||| || |
Sbjct 968 CCATGGACTATCACCGAGGTGCCAATGTTGAGGTCAGAATTGCTAGGATCTTCAACACCT 1027
Query 896 ATGGCCCAAGGATGTGTATCGATGACGGTCGTGTGGTTAGCAACTTCGTTGCCCAGGCAT 955
|||| ||||| |||||||| ||||| || ||||| ||||| ||||||||||| ||||||
Sbjct 1028 ATGGTCCAAGAATGTGTATAGATGATGGGCGTGTTGTTAGTAACTTCGTTGCACAGGCAC 1087
Query 956 TAAGAAAAGAGCCTTTGACTGTTTATGGTGATGGTAAGCAGACAAGGAGTTTCCAGTTTG 1015
|||| |||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1088 TAAGGAAAGAGCCATTGACTGTTTACGGTGATGGGAAGCAGACAAGGAGTTTCCAATTTG 1147
Query 1016 TCTCTGATCTGGTGGAGGGTCTGATGAGGTTGATGGAGGGAGAACATGTCGGTCCATTTA 1075
| ||||||||||| || ||| ||||||| ||||||| |||||||||||||| ||||| |
Sbjct 1148 TTTCTGATCTGGTTGAAGGTTTGATGAGACTGATGGAAGGAGAACATGTCGGCCCATTCA 1207
Query 1076 ACCTTGGTAACCCCGGTGAATTCACCATGCTCGAGCTCGCTAAGGTGGTTCAAGAGACGA 1135
|||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 1208 ACCTCGGTAACCCTGGTGAATTCACGATGCTCGAGCTCGCTAAGGTGGTCCAAGAGACAA 1267
Query 1136 TTGACCCGAACGCAAAGATAGAGTTCAGACCAAACACAGAGGACGACCCACACAAGAGGA 1195
|||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1268 TTGATCCGAATGCAAACATAGAGTTCAGACCAAACACAGAAGACGACCCTCACAAGAG-A 1326
Query 1196 AA-CCAGACATCACAAAGGCCAAAGAGCTTCTT-GGTTGGGAACCAAAGGTGGCTCTACG 1253
|| || |||||||||||||||||||||||| || ||||||||||||||||| |||| ||
Sbjct 1327 AAGCCTGACATCACAAAGGCCAAAGAGCTT-TTAGGTTGGGAACCAAAGGTCTCTCTTCG 1385
Query 1254 CCAAGGG-CTCCCACTTATGGTCAAAGATTTCCGTCAACGTGTCTTTGGCGACCAAAAG 1311
|| ||| || || || |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1386 TCA-GGGACTGCCTCTCATGGTCAAAGATTTCCGTCAACGTGTCTTTGGTGACCAGAAG 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72288784800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5