BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483950
Length=3059
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47680.1 | Symbols: | zinc finger (CCCH type) helicase fami... 4957 0.0
> AT2G47680.1 | Symbols: | zinc finger (CCCH type) helicase family
protein | chr2:19545828-19550905 REVERSE LENGTH=3082
Length=3082
Score = 4957 bits (2684), Expect = 0.0
Identities = 2936/3061 (96%), Gaps = 4/3061 (0%)
Strand=Plus/Plus
Query 1 GTACGACAACAATGGCGGTTTCTTCGCCGACTTCGACTTCCAGCTCTTCTGAATCGTTAC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 24 GTACGACAACAATGGCGGTTTCTTCGCCGACTTCGTCTTCCAGCTCTTCTGAATCGTTAC 83
Query 61 CTTTACCCTCCTCGAACTTCGCTTCGCTTCCGATTATGGCGATGAAGAGGAGAATCATCG 120
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 84 CTTTACCCTCCTCCAACTTCGCTTCGCTTCCGATTATGGCGATGAAAAGGAGAATCATCG 143
Query 121 ACAAAATCCTCGAGAATCGCGTCACTCTCATCGTCGGCGAGCCTGGATGCGGGAAGAGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 ACAAAATCCTCGAGAATCGCGTCACTCTCATCGTCGGCGAGCCTGGATGCGGGAAGAGTT 203
Query 181 CACAAGTTCCACAATTCCTTCTGGAAGCAAACATGGCTCCCATTTTGTGTACACAGCCTA 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 CACAAGTTCCACAGTTCCTTCTGGAAGCAAACATGGCTCCCATTTTGTGTACACAGCCTA 263
Query 241 GGAGATTTGCGGTTGTAGCTGTTGCTAAGATGGTTGCAAAATCTCGCAACTCTGATTTAG 300
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 264 GGAGATTTGCGGTTGTAGCTGTTGCTAAGATGGTTGCTAAATCTCGCAACTCCGATTTAG 323
Query 301 GCGGAGAAATAGGTTACCACATTGGACATTCTAAGATTTTCACTGAAGGGTCCAAAATTC 360
| |||||||| |||||||||||||| |||||||||||||| || |||||||| |||||||
Sbjct 324 GTGGAGAAATTGGTTACCACATTGGGCATTCTAAGATTTTGACCGAAGGGTCGAAAATTC 383
Query 361 TCTTTAAAACTGCTGGAGTTCTGTTGGATGAAATGCTAGACAAGGGGTTGAATGCACTTA 420
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 384 TGTTCAAAACTGCTGGAGTTCTGTTGGATGAAATGCTAGACAAGGGGTTGAATGCACTAA 443
Query 421 AGTATAAGGTTATCATTCTTGATGAAGTGCATGAAAGATCTGTGGAGTCCGATCTTGTTC 480
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 444 AGTACAAGGTTATCATTCTTGATGAAGTGCATGAAAGATCTGTGGAGTCAGATCTTGTTC 503
Query 481 TTGTCTGTGTTAAGCAGTTTCTCATGAAGAACAATGACCTCAGGGTGGTCTTGATGTCTG 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 504 TTGTCTGTGTTAAGCAGTTTCTCATGAAGAATAATGACCTCAGGGTGGTCTTGATGTCTG 563
Query 541 CAACTGCTGATATTACAAGGTACAGAGACTACTTTAAAGAACTAGGCAGGGGTGAACGCG 600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 CAACTGCTGATATAACAAGGTACAGAGACTACTTTAAAGAACTAGGCAGGGGTGAACGCG 623
Query 601 TAGAAGTAGTTGCTATTCCTAGCCCTGACCAGAGAACAATTTTCCAGAGAAGAGTATTAT 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 624 TAGAAGTAGTTGCTATTCCTAGCCCTGACCAGAGAACAATTTTCCAGCGAAGAGTATTAT 683
Query 661 ATCTTGAGCAGGTTGCAGGATTGCTTGGTATGAGTTCTGATTTGTCAGCTTACTGTCCTG 720
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 684 ATCTTGAGCAGGTTGCAGGATTGCTTGGTGTGAGTTCTGATTTGTCAGCTTACTGTCCTG 743
Query 721 GTCCAAGTCCTTCTTCAGCTGATACTGAAATCAAACCTGAACTGCAAAATCTTATTCATG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GTCCAAGTCCTTCTTCAGCTGATACTGAAATCAAACCTGAACTGCAAAATCTTATTCATG 803
Query 781 ATCTCATCTTATATATTCATGAAAAGGAACCAGACATTGAGAAGAGTATTTTGGTTTTCC 840
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 804 ATCTTATCTTATATATTCATGAAAAAGAACCAGACATTGAGAAGAGTATTTTGGTTTTCC 863
Query 841 TTCCAACATACTACTCACTTGAGCAGCAGTGGCATCAATTGGAACCCTTTCGTGCATCTT 900
|||| ||||||||||| ||||||||||||| |||||||||||||||||| ||||||||
Sbjct 864 TTCCGACATACTACTCCCTTGAGCAGCAGTATCATCAATTGGAACCCTTTTTTGCATCTT 923
Query 901 TTGAGGTTCACATATTGCACAGAAGCATTGACACTGAGCAAGCCTTGGCAGCTATGAAGA 960
|||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct 924 TTGAGGTTCACATATTGCACCGAAGCATTGACACCGAGCAAGCCTTGGCGGCTATGAAGA 983
Query 961 TATGCAGATCCCGCCGCAAGGTAATATTGGCTACAAACATTGCGGAATCTTCTGTAACAA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 984 TATGCAGATCCCGCCGCAAGGTAATATTGGCTACAAACATTGCGGAATCTTCGGTAACAA 1043
Query 1021 TACCCAAAGTAGCCTATGTCATTGACTCGTGCCGGTCTCTGCAAGTGTTCTGGGAGGCAT 1080
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1044 TACCCAAAGTAGCATATGTCATTGACTCGTGCCGGTCTCTGCAAGTGTTCTGGGATCCGT 1103
Query 1081 CCAGAAAAAGAGACGCAGTTCAGCTTGTTTGGGTCTCTAGATCTCAGGCTGAGCAACGTA 1140
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 CCAGAAAAAGAGACGCAGTACAGCTTGTTTGGGTCTCTAGATCTCAGGCTGAGCAACGTA 1163
Query 1141 GAGGGAGGACAGGTCGAACATGTGATGGTGAGGTGTATCGCCTGGTGCCGAGTGCATTTT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 GAGGGAGGACAGGTCGAACATGTGATGGTGAGGTGTATCGCCTGGTGCCGAGTGCATTTT 1223
Query 1201 TTAACAAGCTTGAAGAACATGAGCCCCCAGCTATACTTAAGCTGTCATTGAGACAACAAG 1260
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1224 TTAACAAGCTTGAAGAACATGAGCCCCCATCTATACTTAAGCTGTCATTGAGACAACAAG 1283
Query 1261 TTCTCCATATTTGCTGCACGGAATCCAGAGCCATTAATGACGCAAATGTGTTGCTGGCAA 1320
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1284 TTCTCCATATTTGCTGCACGGAATCCAGAGCCATTAATGACGCAAATGCATTGCTGGCAA 1343
Query 1321 AAGCTATGGATCCACCAGACCCAAATGTCATTGATGATGCATTAAAGATGCTATTAAGCA 1380
||||||||||||||||||||||| ||||| |||| |||||||||| |||||| |||||||
Sbjct 1344 AAGCTATGGATCCACCAGACCCAGATGTCGTTGACGATGCATTAAGGATGCTGTTAAGCA 1403
Query 1381 TACGAGCATTGCGGAAATCGCCCAGGGGACGTTACGAGCCCACATTTTATGGACGGTTAC 1440
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1404 TACAAGCATTGCGGAAATCGCCTAGGGGACGTTACGAGCCCACATTTTATGGACGGTTGC 1463
Query 1441 TTGCTAGCTTCCCATTGTCCTTTGATGCATCTATTCTGGTCGTCAAGTTTGGTGAAATGG 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 TTGCTAGCTTCCCATTGTCCTTTGATGCATCTATTCTGGTCGTCAAGTTTGGTGAAATGG 1523
Query 1501 GAATGCTAAGAGAAGGGATTCTATTAGGTGTCCTGATGGATACCCAACCGCTTCCTATCC 1560
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1524 GAATGCTAAGACAAGGGATTCTATTAGGTGTCCTGATGGATACCCTACCACTTCCTATCC 1583
Query 1561 ATCATCCTTTTGGAGATGATTCACTGTTTCTAGAGTATGTTGACCACTATTTTGGTGGCA 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 ATCATCCTTTTGGAGATGATTCACTGTTTCTAGAGTATGTTGACCACTATTTTGGTGGCA 1643
Query 1621 GCAAGACCATTTGTAGTGGGCGGAGGGAGATGGTACTCATGGCAAACTTTTGTGCTTTTC 1680
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 GCAAGACCATTTCTGGTGGGCGGAGGGAGATGGTACTCATGGCAAACTTTTGTGCTTTTC 1703
Query 1681 AGTTTTGGCAGCGTGTCTTTAAGGATAAGCATCGTCTTGAAAACTTGAAACAACTTCTGG 1740
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1704 AGTTTTGGCAACGTGTCTTTAAGGATAAGCATCGTCTTGAAAACTTGAAACAACTCCTGT 1763
Query 1741 CAAAAGAGAAAGACAAAGATCTCAAGTTGATGTTTCCTGAGATTGAAAAAGAGTGGTGTG 1800
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1764 CAAAAGAGAAAGACAAAGATCTCAAGTTGATGTTTCCTGAGATTGAGAAAGAGTGGTGTG 1823
Query 1801 ATTTCCACAATATT-CTTCAGTCATCGTTCTATCATGTGTCTGAGATGTATGAAGATACA 1859
|||||||||||||| | ||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1824 ATTTCCACAATATTGCC-CAGTCCTCGTTCTATCATGTGTCTGAGCTGTATGAAGATACA 1882
Query 1860 CTTAGCTCATTTCATCGTTTCAGACCTCAATTCATCAGTTCTTCTGATTCTCTACCAACC 1919
|||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||
Sbjct 1883 CTTAGCTCATTTCATCGTTTTAGACCTCAATTCATCAGTTCCTCTGATTCTCAACCAACC 1942
Query 1920 TATTACAATCCATATGAATTTTATCACACATGCTATATTGAGTGCCAACTCTCTGAGGAT 1979
||||||||||||||||||||| |||| |||||||||||||||||||||| |||||| |||
Sbjct 1943 TATTACAATCCATATGAATTTGATCATACATGCTATATTGAGTGCCAACCCTCTGAAGAT 2002
Query 1980 AAATATCTACACTCTGAGGACGAAGATAACAATCAACCACCTCCTGAAGTAAGAAAATGT 2039
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2003 AAATATCTACACTCTGAGGACGTAGATAACAATCAACCACCTCCTGAAGTAAGAAAATGT 2062
Query 2040 GTATCAATGCCGTTTGTTCCTCCTAACGCATTCCAAGCTTATGCTGTTGCAGAAAACATG 2099
|||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 2063 GTATCAGTGCCGTTTGTTCCTCCTAACGCATTCCAAGCAAATGCTATTGCAGAAAACATG 2122
Query 2100 GCCAGTATTATCAAAGAGATAAGAACTCAATGCACACCATCTGAATCTGATAATGGCCAC 2159
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2123 GCCAGTATTATCAAAGAGATAAGAACTCAATGCACACCATCTGAATCTGATAATGGCCAT 2182
Query 2160 GGAGCAATCGAACCTGAGGATTACGTTGAGGATGGAGAGGCCCCGGTCTGTGTATATTTT 2219
|||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2183 GGAGCACTCGAACCTGAGGATTACGTTGAGTATGGAGAGGCCCCAGTCTGTGTATATTTT 2242
Query 2220 CTTAATGGATTTTGTAACCGTGGTGACCAGTGCACGTTCTCTCATACTCTTCAGTCAACA 2279
|||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 2243 CTTAATGGATATTGTAACCGTGGTGGCCAGTGCACGTTCACTCATACTCTTCAGTCAACA 2302
Query 2280 AGACCAGCCTGCAAATTTTTCGCGTCATTGCAGGGATGCCGAAATGGAGAATCGTGTTTG 2339
||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||
Sbjct 2303 AGACCAGCCTGCAAATTTTTCGCATCATCGCAGGGATGTCGAAATGGAGAATCGTGTTTG 2362
Query 2340 TTTTCCCACGTCATGCGAAGACGGACAACATCATATCGTCCACCTCCCCAATGCCTTCCA 2399
|||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 2363 TTTTCCCACGCCATGCGACGACGGACAACATCATACCTTCCACCTCCCCAATGCCTTCCA 2422
Query 2400 GAAGAAGATGGCTCTTCCACATCTTCCCTTCTGGATTTGTTTCCTACTTCTTCAGAGGGA 2459
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 2423 GAAGAAGATGGCTCTTCCACATCGCCCCTTCTGGATTTGTTTCCTACTTCTTCTGAGGGA 2482
Query 2460 TGTATCCTTGTGTTTGATGACTCTGCCATGCATTTCACCTCAAGTATAGCCAATCGTTAT 2519
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 2483 TGTATCCTTGTGTTCGATGACTCTGACATGCATTTCACCTCAAGTATAGCCAACCGTTAT 2542
Query 2520 CCGTCCTGGAGAATACTCGCCACATCATCATCTTCAGATATGCTTCTCTGTGATTCATCA 2579
|||||||||||||||||| | |||||||| |||||||| | |||| ||||||||||||||
Sbjct 2543 CCGTCCTGGAGAATACTCTCAACATCATCGTCTTCAGAGACGCTTTTCTGTGATTCATCA 2602
Query 2580 CTTGCAAACACAAGAATCTTCTGGGGTCTCAATCATCCCTACCAGACAATCATCTCAAAA 2639
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2603 CTTGCAGACACAAGAATCTTCTGGGGTCTCAATCATCCCTACCAGACAATCATCTCAAAA 2662
Query 2640 GCAGGAGGGGAGAACCCAATCCCCTGGAACGAAGTGAAATGTGTGTTGTGGTTCCTTAAC 2699
|||||| |||||||||||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 2663 GCAGGAAGGGAGAACCCAATCCCGTGGAACGAAGTGAAATGCGTGCTGTGGTTCCTTAAC 2722
Query 2700 CCAGACAGCTATGCTGATACTCCTGAGG-GACAGAAAACTATTCTGCAGAATTTCTTCGA 2758
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2723 CCAGACAGCTATGCTGATACTCCTGAGAAG-CAGAAAACTATTCTGCAGAATTTCTTCGA 2781
Query 2759 GTACATGGCAATCAGATTACTCGGTGATAATCTTTACGAAATCCGAGTAATTCTCACAAT 2818
| |||||||||||||||||||||| ||||| |||||| ||||||||||| ||||||||||
Sbjct 2782 GCACATGGCAATCAGATTACTCGGCGATAAGCTTTACAAAATCCGAGTAGTTCTCACAAT 2841
Query 2819 GAACAACGTCAGATTCTCACTCTTACAGGTTGAGAAGCTAGCCAGAGACAGCTTCTTCTT 2878
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2842 GAACAACGTCAGATTCTCACTCTTACAGGTTGAGAAGCTAGCCAGAGAAAGCTTCTTCTT 2901
Query 2879 CCTTGGAGAGTCTTTCCCACACAATTCAGTAAGCTTTGGTGAATTTCAAGACACATTAAC 2938
|||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||||
Sbjct 2902 CCTTGGAGAGTCTTTCCCACACGATTCAGAAAGCTTTGGTGCATTCCAAGACACATTAAC 2961
Query 2939 AATCCAGAAGCCTATGCTAGTCTCGAGACCAATCTCCTATGTCTTTAATCTCCATTCGCC 2998
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 2962 AATCCAGAAGCCTATGCTAGTCTCCAGACCAATCTCCTATGTCTTTAATCTCCATCCGCC 3021
Query 2999 TTCTGACATCCAGTTTGGTGACTACACCTCTCTTCTGCACAAATCTCTGCACAACAAATG 3058
||||||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||
Sbjct 3022 TTCTGACATCCAGTTTGGTAACTACACCTCTCTTCTTCGCAAATCTCTTCACAACAAATG 3081
Query 3059 A 3059
|
Sbjct 3082 A 3082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152106171176
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5